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2019-12-19gnu: Add python-pox.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-pox): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-19gnu: Add python-ppft.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-ppft): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-19gnu: python-multiprocess: Update to 0.70.9.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-multiprocess): Update to 0.70.9. [arguments]: Add phase "disable-broken-tests" and run tests after installation. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2019-12-19gnu: python-dill: Update to 0.3.1.1.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-dill): Update to 0.3.1.1. [arguments]: Enable tests. [native-inputs]: Add python-nose. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-18gnupg: 'gnupg-status-missing-key?' returns a fingerprint when possible.Ludovic Courtès
Until then, 'gnupg-status-missing-key?' would return a key id. Its user, 'gnupg-verify*', would then fetch a key with that ID from key servers, thus possibly the wrong key (due to key ID collisions). If it did fetch the wrong key, the effect would be a signature verification failure down the path--e.g., in "guix refresh -u". * guix/gnupg.scm (gnupg-verify)[maybe-fingerprint]: New procedure. [status-line->sexp](errsig-rx): Add parenthetical expression at the end. Fetch it and add it to the 'signature-error' sexp. (gnupg-status-missing-key?): Match the whole 'signature-error' sexp and return preferably the fingerprint rather than KEY-ID. (gnupg-receive-keys): Rename 'key-id' parameter to 'fingerprint/key-id'.
2019-12-18gnupg: 'gnupg-status-good-signature?' no longer returns a key ID.Ludovic Courtès
Returning a key ID was inconsequential because the only user of 'gnupg-status-good-signature?', (guix upstream) (via 'gnupg-verify*'), would not check the return value as long as it's true. * guix/gnupg.scm (gnupg-status-good-signature?): Return a fingerprint/user pair instead of key-id/user. (gnupg-verify*): Mention it in docstring.
2019-12-18guix: swh: Fix example URI in comment for <origin>.Björn Höfling
This is a one-character follow-up to 356a79becc4061d158c68718ad169abac1ab672f Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>. * guix/swh.scm(<origin>): Remove a slash from example URI witin a comment.
2019-12-18gnu: libdbi-drivers: Adapt to multiple-output MariaDB.Marius Bakke
* gnu/packages/databases.scm (mariadb/fixed-install-db): New public variable. (libdbi-drivers)[inputs]: Add MARIADB:DEV and MARIADB:LIB. Remove MARIADB. [native-inputs]: Add MARIADB/FIXED-INSTALL-DB. [arguments]: Adjust accordingly.
2019-12-18gexp: Allow character literals in GEXP->SEXP.Marius Bakke
Fixes <https://bugs.gnu.org/38628>. * tests/gexp.scm ("lower-gexp, character literal"): New test. * guix/gexp.scm (gexp->sexp)[self-quoting?]: Add CHAR? to the tested types. * guix/repl.scm (self-quoting?): Likewise. * gnu/tests.scm (marionette-shepherd-service)[self-quoting?]: Likewise.
2019-12-18gnu: darktable: Update to 2.6.3.Marius Bakke
* gnu/packages/photo.scm (darktable): Update to 2.6.3.
2019-12-18gnu: darktable: Remove redundant inputs.Marius Bakke
* gnu/packages/photo.scm (darktable)[native-inputs]: Remove.
2019-12-18gnu: darktable: Fix build failure.Marius Bakke
* gnu/packages/photo.scm (darktable)[arguments]: Move CPATH override from #:make-flags to a phase, so the GETENV call returns useful data.
2019-12-18gnu: Remove uses of deprecated Qemu network configuration.Marius Bakke
* gnu/build/vm.scm (load-in-linux-vm): Move Qemu network configuration from ARCH-SPECIFIC-FLAGS to the Qemu command line. Use the "-nic" option of Qemu instead of "-device" and "-net". * gnu/system/vm.scm (common-qemu-options): Do not add a '-net' command. (virtual-machine-compiler): Use "-nic user,..." instead of "-net". * doc/guix.texi (Installing Guix in a VM, Invoking guix system, Running Guix in a VM): Do the same for examples.
2019-12-18gnu: linux-libre: Update to 5.3.18.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.18. (linux-libre-5.3-pristine-source): Update hash.
2019-12-18gnu: linux-libre: Update deblob scripts.Mark H Weaver
* gnu/packages/linux.scm (deblob-scripts-4.19): Update to 4.19.90. (deblob-scripts-4.14): Update to 4.14.159. (deblob-scripts-5.3, deblob-scripts-4.9, deblob-scripts-4.4): Update version numbers to 5.3.17, 4.9.206, and 4.4.206, respectively, although the scripts themselves have not changed.
2019-12-18gnu: Add r-biodist.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodist): New variable.
2019-12-18gnu: Add r-biocworkflowtools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable.
2019-12-18gnu: Add r-biocset.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset): New variable.
2019-12-18gnu: Add r-biocpkgtools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
2019-12-18gnu: Add r-biocor.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocor): New variable.
2019-12-18gnu: Add r-bioconcotk.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
2019-12-18gnu: Add r-multiassayexperiment.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
2019-12-18gnu: Add r-experimenthub.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-experimenthub): New variable.
2019-12-18gnu: Add r-biocgraph.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocgraph): New variable.
2019-12-18gnu: Add r-bioccasestudies.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable.
2019-12-18gnu: Add r-ebarrays.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ebarrays): New variable.
2019-12-18gnu: Add r-reactomepa.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
2019-12-18gnu: Add r-graphite.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-graphite): New variable.
2019-12-18gnu: Add r-influencer.Ricardo Wurmus
* gnu/packages/cran.scm (r-influencer): New variable.
2019-12-18gnu: Add r-curatedtcgadata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
2019-12-18gnu: Add r-reactome-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
2019-12-18gnu: libmicrohttpd: Update to 0.9.69.Efraim Flashner
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.69.
2019-12-18gnu: cmst: Update to 2019.01.13.Efraim Flashner
* gnu/packages/connman.scm (cmst): Update to 2019.01.13.
2019-12-18gnu: python-ecdsa: Actually run the test suite.Efraim Flashner
* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: Replace 'check phase. [native-inputs]: Add python-pytest.
2019-12-18gnu: python-ecdsa: Update to 0.14.1.Efraim Flashner
* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.14.1. [inputs]: Move openssl ... [native-inputs]: ... to here. [propagated-inputs]: Add python-six.
2019-12-17swh: Fix API call for getting origin.Björn Höfling
When using the archival linter, git origins already in the archive where not recognized due to an API change and where repeatedly asked for archival. This is fixed here. * guix/swh.scm (lookup-origin): Fix API URI for getting origin. (<origin>): Fix comment with API URI example.
2019-12-17gnu: linux-libre: Update to 5.3.17.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.17. (linux-libre-5.3-pristine-source): Update hash.
2019-12-17gnu: linux-libre@4.19: Update to 4.19.90.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.90. (linux-libre-4.19-pristine-source): Update hash.
2019-12-17gnu: linux-libre@4.14: Update to 4.14.159.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.159. (linux-libre-4.14-pristine-source): Update hash.
2019-12-17gnu: Add r-biobroom.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
2019-12-17gnu: Add r-bioassayr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
2019-12-17gnu: Add r-chemminer.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
2019-12-17gnu: Add r-bigpint.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
2019-12-17gnu: Add r-bigmemoryextras.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
2019-12-17gnu: Add r-biggr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biggr): New variable.
2019-12-17gnu: Add r-hyperdraw.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
2019-12-17gnu: Add r-hypergraph.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
2019-12-17gnu: Add r-rsbml.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
2019-12-17gnu: Add r-bifet.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bifet): New variable.
2019-12-17gnu: Add r-bicare.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bicare): New variable.
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