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2019-07-13gnu: pigx-rnaseq: Update to 0.0.10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.10.
2019-07-13doc: Increase VM memory size.Tobias Geerinckx-Rice
* doc/guix.texi (Running Guix in a VM): Bump ‘-m‘ to 1 GiB to match its @item below, and have a chance of being usable, too.
2019-07-13doc: Update gpg key fetching instructions.Tobias Geerinckx-Rice
This mirrors the steps performed by etc/guix-install.sh. * doc/guix.texi (KEY-SERVER): Replace moribund SKS key servers with... (OPENPGP-SIGNING-KEY-URL): ...the TLS PKI of the future. (Binary Installation, USB Stick and DVD Installation): Update the @example gpg command to download the key directly from Savannah.
2019-07-13gnu: wcslib: Update to 6.2.Tobias Geerinckx-Rice
* gnu/packages/astronomy.scm (wcslib): Update to 6.2. [arguments]: Add #:configure-flags to find CFITSIO.
2019-07-13gnu: wcslib: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/astronomy.scm (wcslib)[source]: Hard-code NAME.
2019-07-12gnu: guile-wisp: fix urlArne Babenhauserheide
* gnu/packages/guile-xyz.scm (guile-wisp): add www to url (required due to hoster-changes) Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-12gnu: wisp: update to 1.0.2.Arne Babenhauserheide
* gnu/packages/guile-xyz (wisp): update to version 1.0.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-12gnu: cmus: Support AAC format.Timotej Lazar
* gnu/packages/music.scm (cmus)[inputs]: Add faad2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-12build: Use '-Wshadowed-toplevel' only when supported.Ludovic Courtès
* guix/build/compile.scm (supported-warning-type?): New procedure. (%warnings): Remove 'unsupported-warning', though removing it doesn't make any difference. Define 'optional', and use it to determine whether to include 'shadowed-toplevel'.
2019-07-13gnu: Add emacs-gitlab-ci-mode.Oleg Pykhalov
* gnu/packages/emacs-xyz.scm (emacs-gitlab-ci-mode): New variable.
2019-07-13gnu: Add emacs-matcha.Oleg Pykhalov
* gnu/packages/emacs-xyz.scm (emacs-matcha): New variable.
2019-07-12gnu: Blender: Update to 2.80-rc1.Leo Famulari
* gnu/packages/graphics.scm (blender): Update to 2.80-rc1.
2019-07-12gnu: OpenImageIO: Update to 1.8.17.Leo Famulari
* gnu/packages/graphics.scm (openimageio): Update to 1.8.17. (openimageio-1.7): New variable. (blender-2.79)[inputs]: Use openimageio-1.7.
2019-07-12gnu: Add aptdec.Arun Isaac
* gnu/packages/ham-radio.scm (aptdec): New variable.
2019-07-12gnu: Add grisbi.Tanguy Le Carrour
* gnu/packages/finance.scm (grisbi): New variable. Signed-off-by: Timothy Sample <samplet@ngyro.com>
2019-07-12gnu: rust: Fix hash.Tobias Geerinckx-Rice
I don't know what the previous hash described, but the signature on this one is valid. * gnu/packages/rust.scm (rust)[source]: Update hash.
2019-07-11gnu: rust: Update to 1.36.0.Ivan Petkov
* gnu/packages/rust.scm (rust): Rename to... (rust-1.35): ...this. (rust): New variable.
2019-07-11gnu: certbot, python-acme: Update to 0.35.1.Leo Famulari
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.35.1.
2019-07-12gnu: expat: fix CVE-2018-20843Jack Hill
* gnu/packages/xml.scm (expat)[replacement]: New field. (expat/fixed): New variable. * gnu/packages/patches/expat-CVE-2018-20843.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch file. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-07-12gnu: expat: Add additional source URIJack Hill
The expat sourceforge page announces that the project is in the process of moving to GitHub. * gnu/packages/xml.scm (expat)[source]: Add GitHub URI. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-07-11gnu: mumi: Update to 0.0.0-4.ea0a28f.Ricardo Wurmus
* gnu/packages/mail.scm (mumi): Update to 0.0.0-4.ea0a28f.
2019-07-11gnu: sbcl-clx: Update to 0.7.5.Pierre Langlois
* gnu/packages/lisp.scm (sbcl-clx): Update to 0.7.5. [origin]: Drop "clx-remove-demo.patch" and the snippet that removes demo code. * gnu/packages/patches/clx-remove-demo.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-11gnu: pies: Update to 1.4.Ludovic Courtès
* gnu/packages/admin.scm (pies): Update to 1.4. [arguments]: Modify /bin/sh reference in src/comp.c as well.
2019-07-11guix gc: Correctly handle '--delete-generations' with no arguments.Ludovic Courtès
Previously, 'guix gc --delete-generations' would crash: the "" pattern would be passed to 'matching-generations', which would return #f instead of returning a list. Reported by Raghav Gururajan <rvgn@disroot.org> in <https://bugs.gnu.org/36466>. * guix/ui.scm (matching-generations): Raise an error when passed an invalid pattern. * guix/scripts/gc.scm (delete-old-generations): Check if PATTERN is true. (%options): Leave ARG as-is for 'delete-generations'. (guix-gc): Use 'assq' instead of 'assoc-ref' for 'delete-generations'. * guix/scripts/package.scm (delete-matching-generations): Replace (string-null? pattern) with (not pattern). Remove 'else' clause. (%options): Leave ARG as-is for 'delete-generations'. * guix/scripts/pull.scm (%options): Leave ARG as-is for 'list-generations'. (process-query): Replace (string-null? pattern) with (not pattern). * guix/scripts/system.scm (list-generations): Likewise, and remove 'else' clause. (process-command): Use #f instead of "" when no pattern is given.
2019-07-11Merge branch 'staging'Marius Bakke
2019-07-11gnu: linux-libre: Update to 5.1.17.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.17. (%linux-libre-hash): Update hash.
2019-07-11gnu: linux-libre@4.19: Update to 4.19.58.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.58. (%linux-libre-4.19-hash): Update hash.
2019-07-11gnu: linux-libre@4.14: Update to 4.14.133.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.133. (%linux-libre-4.14-hash): Update hash.
2019-07-11gnu: linux-libre@4.9: Update to 4.9.185.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.185.
2019-07-11gnu: linux-libre@4.4: Update to 4.4.185.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.185.
2019-07-11gnu: vim-airline-themes: Update to 0.0.0-2.e6f2332.Efraim Flashner
* gnu/packages/vim.scm (vim-airline-themes): Update to 0.0.0-2.e6f2332. [version]: Use 'git-version'. [source]: Use 'git-file-name'.
2019-07-11gnu: msmtp: Install additional files.Efraim Flashner
* gnu/packages/mail.scm (msmtp)[arguments]: Rename custom phase install-msmtpq to install-additional-files. Install vim plugins.
2019-07-11gnu: perl-xml-compile: Update to 1.63.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.63.
2019-07-11gnu: perl-html-form: Update to 6.04.Tobias Geerinckx-Rice
* gnu/packages/web.scm (perl-html-form): Update to 6.04.
2019-07-11gnu: xscreensaver: Remove CFLAG for old gcc versions.Tobias Geerinckx-Rice
* gnu/packages/xdisorg.scm (xscreensaver)[arguments]: Do what the comment tells us.
2019-07-11gnu: xscreensaver: Update to 5.43.Tobias Geerinckx-Rice
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.43.
2019-07-10gnu: acpica: Update to 20190703.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (acpica): Update to 20190703.
2019-07-10gnu: sedsed: Edit description.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (sedsed)[description]: Use @command{} instead of command(n) and do some minor editing.
2019-07-10gnu: sedsed: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (sedsed)[home-page]: Use HTTPS.
2019-07-10gnu: cvs: Rename patch file.Efraim Flashner
* gnu/packages/version-control.scm (cvs)[source]: Rename patch. * gnu/packages/patches/cvs-2017-12836.patch: Rename to ... * gnu/packages/patches/cvs-CVE-2018-12836.patch: ... this. * gnu/local.mk (dist_patch_DATA): Register it.
2019-07-10gnu: libexif: Fix CVE-2018-20030.Efraim Flashner
* gnu/packages/photo.scm (libexif)[source]: Add patch. * gnu/packages/patches/libexif-CVE-2018-20030.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-07-10gnu: strongswan: Update to 5.8.0 [fixes CVE-2018-17540, CVE-2018-2065{0,1}].Efraim Flashner
* gnu/packages/networking.scm (strongswan): Update to 5.8.0.
2019-07-10gnu: net-snmp: Mark package not affected by CVE-2015-8100.Efraim Flashner
* gnu/packages/networking.scm (net-snmp)[properties]: New field.
2019-07-10gnu: testdisk: Download over HTTPS.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (testdisk)[source]: Use HTTPS.
2019-07-10gnu: testdisk: Update to 7.1.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (testdisk): Update to 7.1.
2019-07-10gnu: sedsed: Update to 1.1.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (sedsed): Update to 1.1. [arguments]: Use (default) Python (3).
2019-07-10gnu: sedsed: Symlink after wrapping.Tobias Geerinckx-Rice
Drop unused .sedsed-real symlink and avoid sedsed → sedsed.py → .sedsed.py-real exec chain. * gnu/packages/admin.scm (sedsed)[arguments]: Move ‘symlink’ phase after ‘wrap’.
2019-07-10gnu: mutter: Remove duplicate gtk+ input.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (mutter)[arguments]: Remove duplicate gtk+ from propagated-inputs.
2019-07-10gnu: a2ps: Fix CVE-2015-8107.Efraim Flashner
* gnu/packages/pretty-print.scm (a2ps)[source]: Add patch. * gnu/packages/patches/a2ps-CVE-2015-8107.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-07-10gnu: mupdf: Update to 1.15.0 [fixes CVE-2018-18662, CVE-2018-19777,Efraim Flashner
CVE-2018-1988{1,2}, CVE-2019-613{0,1}, CVE-2019-7321]. * gnu/packages/pdf.scm (mupdf): Update to 1.15.0. [source]: Update source snippet.
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