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2018-09-21gnu: libvpx: Add upstream security fix.Mark H Weaver
* gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/video.scm (libvpx)[source]: Add patch.
2018-09-21gnu: python-paramiko: Update to 2.4.2 [security fixes].Tobias Geerinckx-Rice
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.4.2.
2018-09-21gnu: python-paramiko: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/python-crypto.scm (python-paramiko)[home-page]: Use HTTPS.
2018-09-21gnu: python-rencode: Update to 1.0.5.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-rencode): Update to 1.0.5. [arguments]: Add a 'delete-bogus-test' phase.
2018-09-21gnu: python-hdf4: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-hdf4)[arguments]: Substitute INVOKE for SYSTEM*.
2018-09-21gnu: s6: Update to 2.7.2.1.Tobias Geerinckx-Rice
* gnu/packages/skarnet.scm (s6): Update to 2.7.2.1.
2018-09-21gnu: perl-xml-compile: Update to 1.60.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.60. [propagated-inputs]: Add perl-carp, perl-scalar-list-utils, and perl-types-serialiser.
2018-09-21gnu: emacs-orgalist: Update to 1.9.Nicolas Goaziou
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.9.
2018-09-21gnu: openscenegraph: Update to 3.6.3.Tobias Geerinckx-Rice
* gnu/packages/graphics.scm (openscenegraph): Update to 3.6.3. [source]: Use GIT-FILE-NAME. [inputs]: Remove unused pth and qtbase.
2018-09-21gnu: python-pydot: Update to 1.2.4.Tobias Geerinckx-Rice
* gnu/packages/graphviz.scm (python-pydot): Update to 1.2.4. [arguments]: Run the test suite. [native-inputs]: Add python-chardet.
2018-09-21Add 'GNU Guix' comment to all (gnu packages) headers.Tobias Geerinckx-Rice
* gnu/packages/debian.scm, gnu/packages/syndication.scm: Add comments.
2018-09-21gnu: ubuntu-keyring: Update to 2018.09.18.1.Tobias Geerinckx-Rice
* gnu/packages/debian.scm (ubuntu-keyring): Update to 2018.09.18.1.
2018-09-21gnu: perl-dbd-mysql: Update to 4.048.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
2018-09-21gnu: rust: Work around mtime bug in rust build helpers.Danny Milosavljevic
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[fix-mtime-bug]: Delete. [reset-timestamps-after-changes]: Modify. (rust-1.24): Don't delete "fix-mtime-bug" since now it doesn't ever get created.
2018-09-21gnu: rust@1.20.0: Fix tests.Danny Milosavljevic
* gnu/packages/rust.scm (rust-1.23)[arguments]<#:phases> [patch-cargo-tests, ignore-glibc-2.27-incompatible-test,fix-mtime-bug]: Move to... (rust-1.20): ... here.
2018-09-20gnu: linux-libre: Update to 4.18.9.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.9. (%linux-libre-hash): Update hash.
2018-09-20gnu: linux-libre@4.14: Update to 4.14.71.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.71. (%linux-libre-4.14-hash): Update hash.
2018-09-20gnu: linux-libre@4.9: Update to 4.9.128.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.128.
2018-09-20gnu: linux-libre@4.4: Update to 4.4.157.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.157.
2018-09-20gnu: qbittorrent: Update to 4.1.3.fis trivial
* gnu/packages/bittorrent.scm (qbittorrent): Update to 4.1.3. [inputs]: Use python-wrapper instead of python. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-20gnu: gprolog: Update to 1.4.5.fis trivial
* gnu/packages/gprolog.scm (gprolog): Update to 1.4.5. [source]: Add an alternate source URL. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-20gnu: rsem: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (rsem): Update to 1.3.1. [source]: Fetch from git; remove patch; delete bundled samtools. [arguments]: Pass make flags; adjust phases. [inputs]: Remove ncurses and samtools-0.1; add htslib-1.3. * gnu/packages/patches/rsem-makefile.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-20gnu: ghc-pandoc-citeproc: Update to 0.14.3.1.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): Update to 0.14.3.1.
2018-09-20gnu: ghc-xml-conduit: Update to 1.8.0.1.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-xml-conduit): Update to 1.8.0.1. [inputs]: Add ghc-doctest.
2018-09-20gnu: python2-scikit-learn: Fix check phase.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]: Override check phase to disable broken tests and pass environment variables.
2018-09-20gnu: Add r-parmigene.Ricardo Wurmus
* gnu/packages/cran.scm (r-parmigene): New variable.
2018-09-20gnu: Add emacs-dired-sidebar.Marius Bakke
* gnu/packages/emacs.scm (emacs-dired-sidebar): New public variable.
2018-09-20gnu: eolie: Update home page.Marius Bakke
* gnu/packages/gnome.scm (eolie)[home-page]: Set to wiki.gnome.org/Apps/Eolie.
2018-09-20gnu: services: Add iptables service.Arun Isaac
* gnu/services/networking.scm (<iptables-configuration>): New record type. (iptables-service-type): New variable. * gnu/tests/networking.scm (run-iptables-test): New procedure. (%test-iptables): New variable. * doc/guix.texi (Networking Services): Document it.
2018-09-20gnu: u-boot: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/bootloaders.scm (u-boot)[home-page]: Use HTTPS.
2018-09-20gnu: ccid: Update to 1.4.30.Tobias Geerinckx-Rice
* gnu/packages/security-token.scm (ccid): Update to 1.4.30.
2018-09-20gnu: opusfile: Update to 0.11.Tobias Geerinckx-Rice
* gnu/packages/xiph.scm (opusfile): Update to 0.11.
2018-09-20Use INVOKE in (gnu packages xdisorg).Tobias Geerinckx-Rice
* gnu/packages/xdisorg.scm (scrot, unclutter, xautolock, nxbelld) [arguments]: Use INVOKE.
2018-09-20Use INVOKE in (gnu packages shells).Tobias Geerinckx-Rice
* gnu/packages/shells.scm (mksh)[arguments]: Use INVOKE... (scsh)[arguments]: ...and also return #t from all phases.
2018-09-20gnu: Use INVOKE & return #t from Ruby package phases.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from all phases. * gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute INVOKE for SYSTEM*. * gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate) (ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins) (ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure) (ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard) (ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers) (ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer) (ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery) (ruby-rc4, ruby-concurrent)[arguments]: Likewise.
2018-09-20gnu: ruby-heredoc-unindent: Fix typo in description.Tobias Geerinckx-Rice
* gnu/packages/ruby.scm (ruby-heredoc-unindent)[description]: Fix typo.
2018-09-20Use INVOKE in (gnu packages telephony).Tobias Geerinckx-Rice
* gnu/packages/telephony.scm (libiax2, mumble)[arguments]: Use INVOKE.
2018-09-20gnu: gourmet: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/nutrition.scm (gourmet)[home-page]: Use HTTPS.
2018-09-20gnu: sg3-utils: Update to 1.44.Tobias Geerinckx-Rice
* gnu/packages/scsi.scm (sg3-utils): Update to 1.44.
2018-09-19gnu: shotwell: Update to 0.28.4.Leo Famulari
* gnu/packages/gnome.scm (shotwell): Update to 0.28.4.
2018-09-19gnu: OpenSC: Update to 0.19.0 [security fixes].Leo Famulari
Fixes CVE-2018-{16391,16392,16393,16418,16419,16420,16421,16422,16423,16424, 16425,16426,16427}. * gnu/packages/security-token.scm (opensc): Update to 0.19.0.
2018-09-19gnu: sbcl-slynk: Fix the build.Andy Patterson
* gnu/packages/lisp.scm (sbcl-slynk-boot0): Update to commit cbf84c36c4eca8b032e3fd16177a7bc02df3ec4c. [origin]<snippet>: Replace slynk/util references with the built system name slynk-util. Remove compile-time invocations of slynk-require. (sbcl-slynk-util): Inherit from sbcl-slynk-boot0. [inputs]: Add sbcl-slynk-boot0. [arguments]: Set an appropriate asd-file and asd-system-name. (sbcl-slynk-arglists)[arguments]: Set an appropriate asdf-system-name. (sbcl-slynk-fancy-inspector)[arguments]: Likewise. (sbcl-slynk-package-fu)[arguments]: Likewise. (sbcl-slynk-mrepl)[arguments]: Likewise. (sbcl-slynk-trace-dialog)[arguments]: Likewise. (sbcl-slynk-profiler)[arguments]: Likewise. (sbcl-slynk-indentation)[arguments]: Likewise. (sbcl-slynk-retro)[arguments]: Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19build-system/asdf: Adopt asdf conventions.Andy Patterson
The asdf documentation specifies that asdf:load-asd should be preferred to calling load on a system definition file. * guix/build/lisp-utils.scm (compile-system): Replace load with asdf:load-asd. (system-dependencies): Likewise. (test-system): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19build-system/asdf: Use invoke.Andy Patterson
* guix/build/lisp-utils.scm (lisp-eval-program): Replace system* and error handling with invoke. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19build-system/asdf: Log lisp system invocations.Andy Patterson
* guix/build/lisp-system.scm: (lisp-eval-program): Log the arguments to system*. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19build-system/asdf: Handle all asdf dependency specifications.Andy Patterson
Add support for dependencies of the form (:version <name> <version>), (:feature <feature> <dependency-specification>) and (:require <module-name>), as defined by <https://common-lisp.net/project/asdf/asdf.html#The-defsystem-grammar>. * guix/build/lisp-utils.scm (normalize-dependency): New variable. (make-asd-file)[dependencies]: Use it to generate dependencies with normalized names. [dependency-name]: New variable. [registry]: Use it to flatten the normalized dependencies. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-19services: networking: Remove unbound variable reference in 'stop'.Ludovic Courtès
* gnu/services/base.scm (static-networking-shepherd-service): Remove spurious ":" in 'stop' method inadvertently introduced in commit c9436025a90b86047ba2203d58bbf238f8f9b2f9.
2018-09-19services: udev: Simplify 'start' method.Ludovic Courtès
* gnu/services/base.scm (udev-shepherd-service)[start](find): Remove. (udev): Hardwire the eudev file name. Use 'fork+exec-command' instead of 'primitive-fork' and 'exec-command'.
2018-09-19gnu: glm: Update to 0.9.9.2.Marius Bakke
* gnu/packages/maths.scm (glm): Update to 0.9.9.2.
2018-09-19gnu: feh: Update to 2.28.Marius Bakke
* gnu/packages/image-viewers.scm (feh): Update to 2.28.
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