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2017-04-28gnu: r-annotationforge: Update to 1.18.0.Roel Janssen
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.0.
2017-04-28gnu: r-deseq2: Update to 1.16.0.Roel Janssen
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.0.
2017-04-28gnu: r-genefilter: Update to 1.58.0.Roel Janssen
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.58.0.
2017-04-28gnu: r-geneplotter: Update to 1.54.0.Roel Janssen
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.54.0.
2017-04-28gnu: r-annotate: Update to 1.54.0.Roel Janssen
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.54.0.
2017-04-28import: Update Bioconductor release to 3.5.Roel Janssen
* guix/import/cran.scm: Change Bioconductor release to 3.5.
2017-04-28gnu: Add r-genomeinfodbdata.Roel Janssen
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): New variable.
2017-04-28gnu: Add r-delayedarray.Roel Janssen
* gnu/packages/bioinformatics.scm (r-delayedarray): New variable.
2017-04-28gnu: Add r-bookdown.Roel Janssen
* gnu/packages/bioinformatics.scm (r-bookdown): New variable.
2017-04-28gnu: linux-libre: Update to 4.10.13.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.13. (%linux-libre-hash): Update hash.
2017-04-28gnu: linux-libre@4.9: Update to 4.9.25.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.25.
2017-04-28gnu: linux-libre@4.4: Update to 4.4.64.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.64.
2017-04-27gnu: serf: Update to 1.3.9.Marius Bakke
* gnu/packages/patches/serf-comment-style-fix.patch, gnu/packages/patches/serf-deflate-buckets-test-fix.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/web.scm (serf): Update to 1.3.9. [source]: Remove patches.
2017-04-27gnu: serf: Disable expired SSL tests.Marius Bakke
Fixes <https://bugs.gnu.org/26671>. * gnu/packages/web.scm (serf)[arguments]<#:phases>: Add 'disable-broken-tests'.
2017-04-27gnu: kodi: Update to 18.0_alpha-3-749c61e.Marius Bakke
* gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-3-749c61e.
2017-04-27gnu: tor: Update to 0.3.0.6.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (tor): Update to 0.3.0.6.
2017-04-27gnu: simple-scan: Update to 3.24.1.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (simple-scan): Update to 3.24.1.
2017-04-27gnu: Add mdbtools.Arun Isaac
* gnu/packages/databases.scm (mdbtools): New variable.
2017-04-27Merge branch 'staging'Leo Famulari
2017-04-26gnu: owncloud-client: Update to 2.3.1.Efraim Flashner
* gnu/packages/sync.scm (owncloud-client): Update to 2.3.1. [arguments]: Enable more tests.
2017-04-27gnu: synergy: Update to 1.8.8.Vasile Dumitrascu
* gnu/packages/synergy.scm (synergy): Update to 1.8.8. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-04-26gnu: Add Xfce Notification Daemon.Petter
* gnu/packages/xfce.scm (xfce4-notifyd): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-04-26gnu: Add volk.Danny Milosavljevic
Fixes <http://bugs.gnu.org/26614>. * gnu/packages/engineering.scm (volk): New variable.
2017-04-26gnu: nss-pam-ldapd: Add Kerberos support.Ricardo Wurmus
* gnu/packages/openldap.scm (nss-pam-ldapd)[inputs]: Add mit-krb5.
2017-04-26gnu: nss-pam-ldapd: Look for nslcd.conf in global /etc/ directory.Ricardo Wurmus
* gnu/packages/openldap.scm (nss-pam-ldapd)[arguments]: Set "--with-ldap-conf-file" to look for global configuration file; add build phase to install example configuration file in the package output directory.
2017-04-26gnu: ethtool: Update to 4.10.Mathieu Othacehe
* gnu/packages/networking.scm (ethtool): Update to 4.10. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-04-26gnu: ceph: Update to 12.0.2.Marius Bakke
* gnu/packages/storage.scm (ceph): Update to 12.0.2. [arguments]<#:phases>: Disable new test. * gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust.
2017-04-26gnu: vte-ng: Update to 0.48.2.a.Marius Bakke
* gnu/packages/gnome.scm (vte-ng): Update to 0.48.2.a. [native-inputs]: Change GPERF-3.0 to GPERF.
2017-04-26gnu: Add gcompris-qt.Efraim Flashner
* gnu/packages/education.scm (gcompris-qt): New variable.
2017-04-26gnu: qtkeychain: Update to 0.8.0.Efraim Flashner
* gnu/packages/qt.scm (qtkeychain): Update to 0.8.0.
2017-04-26gnu: fuse: Patch conflicting headers with the kernel.Efraim Flashner
* gnu/packages/linux.scm (fuse)[source]: Add patch. * gnu/packages/patches/fuse-overlapping-headers.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2017-04-25gnu: Add guile-sjson.Christopher Allan Webber
* gnu/packages/guile.scm (guile-sjson): Add guile-sjson.
2017-04-25gnu: Add freexl.Catonano
* gnu/packages/xml.scm (freexl): New variable.
2017-04-25gnu: duplicity: Update to 0.7.12.Thomas Danckaert
* gnu/packages/backup.scm (duplicity): Update to 0.7.12.
2017-04-26Update name on email address for Mathieu Othacehe.Arun Isaac
2017-04-25Merge branch 'master' into stagingLeo Famulari
2017-04-25gnu: cmst: Update to 2017.03.18.Mathieu Othacehe
* gnu/packages/connman.scm (cmst): Update to 2017.03.18. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-04-25gnu: python-pysam: Disable tests.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pysam): Disable tests.
2017-04-24gnu: mpv: Update to 0.25.0.Efraim Flashner
* gnu/packages/video.scm (mpv): Update to 0.25.0. [arguments]: Add explicit configure-flags to enable cdda, dvdread and dvdnav.
2017-04-24gnu: speedtest-cli: Update to 1.0.5.Mathieu Othacehe
* gnu/packages/networking.scm (speedtest-cli): Update to 1.0.5. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-04-24gnu: python-pysam: Fix tests, again.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Run nosetests explicitly with a single process.
2017-04-24gnu: diamond: Enable building on all architectures.Efraim Flashner
* gnu/packages/bioinformatics.scm (diamond)[supported-systems]: Remove field.
2017-04-24gnu: libevent: Disable regress tests.Efraim Flashner
* gnu/packages/libevent.scm (libevent)[arguments]: Disable the 'regress' tests.
2017-04-24gnu: wmfire: Update source code for new GDK versions.Kei Kebreau
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnustep.scm (wmfire)[source]: Add patch.
2017-04-24gnu: unionfs-fuse: Enable tests.Efraim Flashner
* gnu/packages/linux.scm (unionfs-fuse)[arguments]: Replace 'check phase. [native-inputs]: Add python, python-pytest.
2017-04-24gnu: unionfs-fuse: Update to 2.0.Efraim Flashner
* gnu/packages/linux.scm (unionfs-fuse): Update to 2.0. [home-page]: Update to Github page.
2017-04-24gnu: wiredtiger: Enable building on aarch64-linux.Efraim Flashner
* gnu/packages/databases.scm (wiredtiger)[supported-systems]: Add aarch64-linux to supported-systems.
2017-04-24gnu: reptyr: Remove aarch64 from supported systems.Efraim Flashner
* gnu/packages/screen.scm (reptyr)[supported-systems]: Remove aarch64-linux from supported-systems.
2017-04-24gnu: sdl-gfx: Enable building on all architectures.Efraim Flashner
* gnu/packages/sdl.scm (sdl-gfx)[arguments]: On non-Intel architectures disable mmx processor instructions. [supported-systems]: Remove field.
2017-04-24gnu: libsmpeg: Set source file-name.Efraim Flashner
* gnu/packages/video.scm (libsmpeg)[source]: Add file-name field.
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