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2023-01-07gnu: python-capstone: Fix tests.Marius Bakke
* gnu/packages/engineering.scm (python-capstone)[arguments]: Override check phase. While here, remove label usage in chdir-and-fix-setup-py phase.
2023-01-07gnu: Remove python-trollius-redis.Marius Bakke
This package fails to build and has been inactive upstream for 8 years. * gnu/packages/databases.scm (python-trollius-redis): Remove variable.
2023-01-07gnu: python-openid-teams: Add missing inputs.Marius Bakke
* gnu/packages/python-web.scm (python-openid-teams)[propagated-inputs]: Add PYTHON-OPENID and PYTHON-SIX.
2023-01-07gnu: python-openid-cla: Add missing inputs.Marius Bakke
* gnu/packages/python-web.scm (python-openid-cla)[propagated-inputs]: Add PYTHON-OPENID and PYTHON-SIX.
2023-01-07gnu: Use old setuptools in packages that relies on use_2to3 conversion.Marius Bakke
This fixes a regression since 520cdf80581669646ff61e9f18f3b27045556e76 where the use_2to3 functionality was removed from setuptools. * gnu/packages/graph.scm (python-louvain)[native-inputs]: Change from PYTHON-SETUPTOOLS to PYTHON-SETUPTOOLS-57. * gnu/packages/python-check.scm (python-parameterizedtestcase)[native-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-anyjson)[native-inputs]: Add PYTHON-SETUPTOOLS-57. * gnu/packages/bioinformatics.scm (python-pyvcf)[native-inputs]: Change from PYTHON-SETUPTOOLS-FOR-TENSORFLOW to PYTHON-SETUPTOOLS-57.
2023-01-07gnu: python-setuptools: Add 57.5.0.Marius Bakke
* gnu/packages/python-build.scm (python-setuptools-57): New variable.
2023-01-07gnu: linux-libre 5.10: Update to 5.10.162.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.162. (linux-libre-5.10-pristine-source): Update hash.
2023-01-07gnu: linux-libre 6.0: Update to 6.0.17.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.17. (linux-libre-6.0-pristine-source): Update hash.
2023-01-07gnu: linux-libre 6.1: Update to 6.1.3.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.3. (linux-libre-6.1-pristine-source): Update hash.
2023-01-07Revert "services: base: Add extra-env support to guix-configuration."Mathieu Othacehe
This reverts commit 78a9b4f996ba18b4460ba380b87e9538007c27e0. It was pushed by error, while not reviewed yet.
2023-01-07gnu: lttng-tools: Update to 2.13.9.Olivier Dion
* gnu/packages/instrumentation.scm (lttng-tools): Update to 2.13.9. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-01-07gnu: tippecanoe: Update to 2.17.0.Nikolay Korotkiy
* gnu/packages/geo.scm (tippecanoe): Update to 2.17.0. [source]: Update the url to a maintained repository. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-01-07gnu: doctl: Update to 1.92.0.Matthew James Kraai
* gnu/packages/admin.scm (doctl): Update to 1.92.0. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-01-07gnu: strawberry: Update to 1.0.12.Michael Rohleder
* gnu/packages/music.scm (strawberry): Update to 1.0.12. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-01-07gnu: strawberry: Use qt6 instead of qt5.Michael Rohleder
* gnu/packages/music.scm (strawberry)[inputs]: Remove qtbase-5. Add qtbase. [native-inputs]: Remove qttools-5. Add qttools. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-01-07gnu: sfeed: Update to 1.6.Nikolay Korotkiy
* gnu/packages/suckless.scm (sfeed): Update to 1.6. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-01-07gnu: slock: Update to 1.5.Nikolay Korotkiy
* gnu/packages/suckless.scm (slock): Update to 1.5. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-01-07gnu: guile-udev: Update to 0.2.4.Artyom V. Poptsov
* gnu/packages/guile-xyz.scm (guile-udev): Update to 0.2.4. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-01-07services: base: Add extra-env support to guix-configuration.Mathieu Othacehe
* gnu/services/base.scm (<guix-configuration>)[extra-env]: New field. (guix-shepherd-service): Honor it. * doc/guix.texi (Base Services): Document it.
2023-01-07gnu: Remove emacs-nadvice as a propagated input.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-compat)[propagated-inputs]: Remove EMACS-NADVICE. * gnu/packages/emacs-xyz.scm (emacs-excorporate)[propagated-inputs]: Remove EMACS-NADVICE. Emacs Nadvice provides a compatibility layer for Emacs < 24.4. Nowadays, Guix provides at leas Emacs 28. This package is not useful. Worse, it can introduce issues with autoloads, as reported in <https://issues.guix.gnu.org/60627>.
2023-01-07gnu: emacs-org-ql: Update to 0.6.3-0.2953352.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.6.3-0.2953352. [arguments]: Fix a test. [native-inputs]: Move after arguments field. [propagated-inputs]: Re-order alphabetically. Move after arguments field.
2023-01-07substitutes: Log the failing queries.Mathieu Othacehe
* guix/substitutes.scm (%debug?): New variable. (handle-narinfo-response): Log the failing queries if the %debug? parameter is set.
2023-01-07scripts: publish: Add a custom baking header.Mathieu Othacehe
Log the not-found responses and their reason (baking or not) to stdout. Also send the X-Baking custom header so that the client can be informed of the cause of the failure. * guix/scripts/publish.scm (not-found): Add a baking? argument to add the X-Baking HTTP header to the response if baking is in progress. Also, log the 404 responses to stdout, indicating if it is due to baking or not. (render-narinfo/cached): Pass the baking? argument.
2023-01-07gnu: emacs-citre: Improve synopsis and description.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-citre)[synopsis]: Clarify meaning. [description]: Fix typo.
2023-01-07gnu: emacs-citre: Search proper ctags program.Feng Shu
* gnu/packages/emacs-xyz.scm (emacs-citre)[arguments]<#:phases>: Do not use search-input-file to search ctags, for it will get ctags of emacs-minimal instead of universal-ctags. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-01-07gnu: emacs-company-posframe: Update to 0.7.0.Feng Shu
* gnu/packages/emacs-xyz.scm (emacs-company-posframe): Update to 0.7.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-01-07gnu: Add emacs-citre.Feng Shu
* gnu/packages/emacs-xyz.scm (emacs-citre): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-01-07gnu: Add emacs-ebdb-i18n-chn.Feng Shu
* gnu/packages/emacs-xyz.scm (emacs-ebdb-i18n-chn): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-01-07gnu: Add emacs-cal-china-x.Feng Shu
* gnu/packages/emacs-xyz.scm (emacs-cal-china-x): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-01-07gnu: emacs-pyim-basedict: Install pyim-basedict.pyim file.Feng Shu
* gnu/packages/emacs-xyz.scm (emacs-pyim-basedict) [arguments]<#:include>: Install "pyim-basedict.pyim" file. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-01-07gnu: emacs-inspector: Update to 0.10.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-inspector): Update to 0.10.
2023-01-07gnu: emacs-consult: Update to 0.31.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.31.
2023-01-07gnu: emacs-compat: Update to 29.1.0.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-compat): Update to 29.1.0.1.
2023-01-07gnu: emacs-benchmark-init: Update to 1.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-benchmark-init): Update to 1.1.
2023-01-06gnu: indi: Update to 1.9.9.Sharlatan Hellseher
* gnu/packages/astronomy.scm (indi): Update to 1.9.9. [arguments]{tests}: Silent test on aarch64-linux system. [inputs]: Add libev. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06gnu: python-astropy: Update to 5.1.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy): Update to 5.1.1. [source]{snippet}: Unbundle wcslib. [arguments]{phases}: preparations: Use all system libraries. [inputs]: Add wcslib. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06gnu: wcslib: Update to 7.12.Sharlatan Hellseher
* gnu/packages/astronomy.scm (wcslib): Update to 7.12. [arguments]: Use Gexp, enable parallel tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06gnu: python-fitsio: Update to 1.1.8.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-fitsio): Update to 1.1.8. [arguments]{phases}: skip-bzip2-test remove redundant phase as cfitsio built with bzip2 support. [inputs]: Add curl-minimal. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06gnu: cfitsio: Build with bzip2 support.Sharlatan Hellseher
* gnu/packages/astronomy.scm (cfitsio): [arguments](configure-flags): Add bzip2 option. [inputs]: Add bzip2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06gnu: cfitsio: Update to 4.2.0.Sharlatan Hellseher
Fix build on aarch64-linux as reported in: - https://issues.guix.gnu.org/59323 - https://github.com/rwesson/ALFA/issues/29 The latest version passed build on aarch64-linux system with curl and gfortran enabled. wcslib@7.5 passed build with curl enabled (was marked as failing in cements). * gnu/packages/astronomy.scm (cfitsio): Update to 4.2.0. [arguments]: Use Gexp, enable tests. [arguments](phases): Delete check and add post-install-check phases. [native-inputs]: Add gfortran. [inputs]: Add curl, zlib. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-06doc: cookbook: Remove 404 link to mitpress.mit.edu.Ludovic Courtès
* doc/guix-cookbook.texi (A Scheme Crash Course): Remove 404 link to mitpress.mit.edu.
2023-01-06gnu: guile-email: Update to 0.3.0.Arun Isaac
* gnu/packages/guile-xyz.scm (guile-email): Update to 0.3.0. [native-inputs]: Remove pkg-config and lzip. Add texinfo. [arguments]: Remove GUILE_AUTO_COMPILE=0 make-flag. Add prefix make-flag. Delete configure phase. (guile2.2-email)[arguments]: Add guile_effective_version=2.2 make-flag. * gnu/packages/patches/guile-email-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it.
2023-01-06gnu: Update guile-syntax-highlight to 0.2.0.David Thompson
* gnu/packages/guile-xyz.scm (guile-syntax-highlight): Update to 0.2.0.
2023-01-06gnu: bbmap: Update to 39.01.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bbmap): Update to 39.01.
2023-01-06gnu: bbmap: Use gexp.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bbmap)[arguments]: Use gexp.
2023-01-06gnu: nanopolish: Drop input labels.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (nanopolish)[inputs]: Drop labels.
2023-01-06gnu: nanopolish: Update to 0.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (nanopolish): Update to 0.14.0. [source]: Update snippet. [arguments]: Use gexp; use cc-for-target; drop #T from build phases. [inputs]: Add minimap2. [native-inputs]: Add cmake-minimal.
2023-01-06gnu: filtlong: Use Python 3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (filtlong)[inputs]: Replace python-2 with python-wrapper.
2023-01-06gnu: filtlong: Use gexp.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (filtlong)[arguments]: Use gexp.
2023-01-06gnu: filtlong: Drop input labels.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (filtlong)[inputs]: Drop labels.
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