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2017-10-07Merge branch 'master' into stagingMarius Bakke
2017-10-07gnu: vsearch: Update to 2.5.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.5.0.
2017-10-06gnu: linux-libre: Update to 4.13.5.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.5. (%linux-libre-hash): Update hash.
2017-10-06gnu: linux-libre@4.9: Update to 4.9.53.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.53.
2017-10-06gnu: linux-libre@4.4: Update to 4.4.90.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.90.
2017-10-07system: Really filter out Linux device names for the store.Ludovic Courtès
This is a followup to db4e8fd5d4a07d3be8ce68fb96722ef7077c0eee. Fixes <https://bugs.gnu.org/28445>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/system.scm (ensure-not-/dev): New procedure. (read-boot-parameters)[ensure-not-/dev]: Remove. (operating-system-boot-parameters): Use it.
2017-10-06services: Add MongoDB.Christopher Baines
* gnu/services/databases.scm (%default-mongodb-configuration-file, %mongodb-accounts, mongodb-service-type): New variables. (<mongodb-configuration>): New record type. (mongodb-activation, mongodb-shepherd-service): New procedures. * gnu/tests/databases.scm (%test-mongodb): New variable. * doc/guix.texi (Database Services): Add MongoDB documentation.
2017-10-06gnu: Add mongodb.Christopher Baines
* gnu/packages/databases.scm (mongodb): New variable.
2017-10-06gnu: btrfs-progs: Update to 4.13.2.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): Update to 4.13.2.
2017-10-06gnu: glibc-locales: Use 'modify-phases' syntax.Efraim Flashner
* gnu/packages/base.scm (glibc-locales)[arguments]: Use 'modify-phases' syntax.
2017-10-06gnu: guix: Update development snapshot.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to 8b920d7.
2017-10-06import: Use a 'file://' URL in 'alist->package' test.Ludovic Courtès
* tests/import-utils.scm ("alist->package with simple source"): Use a 'file://' URL.
2017-10-06uuid: Fix typo in 'uuid=?' test.Ludovic Courtès
* tests/uuid.scm ("uuid=?"): Change to 'test-assert'.
2017-10-06Merge branch 'master' into stagingMarius Bakke
2017-10-06gnu: libdrm: Disable etnaviv driver.Marius Bakke
* gnu/packages/xdisorg.scm (libdrm)<#:configure-flags>: On armhf-linux, don't build etnaviv driver.
2017-10-06gnu: dconf: Update to 0.26.1.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (dconf): Update to 0.26.1.
2017-10-06gnu: glade: Update to 3.20.1.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (glade): Update to 3.20.1.
2017-10-06gnu: tor: Enable directory protocol compression.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (tor)[native-inputs]: Add pkg-config. [inputs]: Add xz and zstd.
2017-10-06gnu: tor: Fix typo.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (tor)[inputs]: Move unquote to its operand.
2017-10-06gnu: texlive-bin: Fix FTBFS with Poppler >= 0.58.Marius Bakke
* gnu/packages/tex.scm (texlive-bin)[source](patches): Add patch from Arch Linux. [arguments]<#:configure-flags>: Add CXXFLAGS=-std=gnu++11.
2017-10-06gnu: octave: Reference makeinfo with absolute path.Arun Isaac
* gnu/packages/maths.scm (octave)[arguments]: Add configure-makeinfo phase. [inputs]: Add texinfo. [native-inputs]: Remove texinfo.
2017-10-05publish: Cache uncompressed nars as well.Ludovic Courtès
Fixes <https://bugs.gnu.org/28664>. Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>. * guix/scripts/publish.scm (bake-narinfo+nar): When COMPRESSION is 'none, write NAR instead of doing nothing. (make-request-handler): Use 'render-nar/cached' for /nar URLs with no compression. * tests/publish.scm ("with cache", "with cache, uncompressed"): Adjust expected result accordingly.
2017-10-05gnu: inkscape: Fix FTBFS with Poppler >= 0.58.Marius Bakke
* gnu/packages/inkscape.scm (inkscape)[source]: Add upstream patch.
2017-10-05gnu: vte-ng: Update to 0.50.1.a.Marius Bakke
* gnu/packages/gnome.scm (vte-ng): Update to 0.50.1.a.
2017-10-05gnu: openjpeg: Update to 2.3.0.Marius Bakke
* gnu/packages/patches/openjpeg-CVE-2017-12982.patch, gnu/packages/patches/openjpeg-CVE-2017-14040.patch, gnu/packages/patches/openjpeg-CVE-2017-14041.patch, gnu/packages/patches/openjpeg-CVE-2017-14151.patch, gnu/packages/patches/openjpeg-CVE-2017-14152.patch, gnu/packages/patches/openjpeg-CVE-2017-14164.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/image.scm (openjpeg): Update to 2.3.0. [source](patches): Remove. * gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Adjust openjpeg substitution.
2017-10-05gnu: imagemagick: Update to 6.9.9-18.Marius Bakke
Fixes <https://bugs.gnu.org/28692>. Reported by Diego Nicola Barbato <dnbarbato@posteo.de>. * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-18.
2017-10-05gnu: libpng@1.2: Update to 1.2.59.Leo Famulari
* gnu/packages/image.scm (libpng-1.2): Update to 1.2.59.
2017-10-05gnu: certbot, python-acme: Update to 0.19.0.Leo Famulari
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.19.0.
2017-10-05gnu: lightning: Update to 2.1.2.Kei Kebreau
* gnu/packages/assembly.scm (lightning): Update to 2.1.2.
2017-10-05gnu: Add pdsh.Ricardo Wurmus
* gnu/packages/ssh.scm (pdsh): New variable.
2017-10-05gnu: Add imb-openmpi.Dave Love
* gnu/packages/benchmark.scm (imb): New procedure. (imb-openmpi): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-05guix system: Error out when passed a wrong file system UUID/label.Ludovic Courtès
* guix/scripts/system.scm (check-file-system-availability): New procedure. (perform-action): Use it.
2017-10-05file-systems: Add a 'location' field to <file-system>.Ludovic Courtès
* gnu/system/file-systems.scm (<file-system>)[location]: New field.
2017-10-05uuid: Add 'uuid=?' and use it.Ludovic Courtès
* gnu/system/uuid.scm (uuid=?): New procedure. * tests/uuid.scm ("uuid=?"): New test. * gnu/build/file-systems.scm (partition-uuid-predicate) (luks-partition-uuid-predicate): Use it instead of 'bytevector=?'.
2017-10-05gnu: Add python-numpy-next.Ricardo Wurmus
* gnu/packages/python.scm (python-numpy-next, python2-numpy-next): New variables.
2017-10-05Revert "gnu: python-numpy: Update to 1.13.1."Ricardo Wurmus
This reverts commit 025b196d9b739418dd9d305864fdb1fb1d0d5af2. This is necessary as neither the current release nor the latest development version of python-pandas can be build with numpy 1.13.x.
2017-10-04gnu: curl: Update replacement to 7.56.0 [security fixes].Kei Kebreau
Fixes CVE-2017-1000254. See <https://curl.haxx.se/docs/adv_20171004.html> for details. * gnu/packages/curl.scm (curl)[replacement]: Update to 7.56.0. (curl-7.55.0): Rename to ... (curl-7.56.0): ... this. [arguments]: Remove 'fix-Makefile' phase. [source]: Remove patch. * gnu/packages/patches/curl-bounds-check.patch: Delete it. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-10-04gnu: go: update to 1.9.1 [security fixes].Leo Famulari
See the release announcement and bug reports for more details about the security issues fixed in this release: https://groups.google.com/forum/m/#!topic/golang-nuts/sHfMg4gZNps https://golang.org/issue/22125 https://golang.org/issue/22134 * gnu/packages/golang.scm (go-1.9): Update to 1.9.1.
2017-10-05Merge branch 'master' into stagingMarius Bakke
2017-10-05gnu: xorg-server: Update to 1.19.4 [fixes CVE-2017-13721, CVE-2017-13723].Marius Bakke
The GPG signature for the bz2 tarball is bad, but the checksum matches the signed release announcement, and contents are identical to the good .gz. * gnu/packages/xorg.scm (xorg-server): Update to 1.19.4. [source]: Remove obsolete patches. * gnu/packages/patches/xorg-server-CVE-2017-10971.patch, gnu/packages/patches/xorg-server-CVE-2017-10972.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2017-10-04gnu: mutt: Update to 1.9.1.Leo Famulari
* gnu/packages/mail.scm (mutt): Update to 1.9.1.
2017-10-04gnu: isync: Update to 1.3.0.Leo Famulari
* gnu/packages/mail.scm (isync): Update to 1.3.0. [native-inputs]: Add perl.
2017-10-04gnu: Add python-parameterized.Ricardo Wurmus
* gnu/packages/check.scm (python-parameterized, python2-parameterized): New variables.
2017-10-04gnu: python-numexpr: Update to 2.6.4.Ricardo Wurmus
* gnu/packages/python.scm (python-numexpr): Update to 2.6.4.
2017-10-04gnu: python-numpy: Give sh store location instead of setting $SHELL.Thomas Danckaert
* gnu/packages/python.scm (python-numpy): [arguments] Don't set $SHELL in the environment, but embed the store location of bash-minimal as a default shell. Otherwise, we have to set $SHELL for every package which uses numpy's distutils.
2017-10-04gnu: virtuoso-ose: Limit to 64-bit platforms.Efraim Flashner
* gnu/packages/databases.scm (virtuoso-ose)[supported-systems]: New field.
2017-10-04gnu: emacs-pyim: Fix error input nameFeng Shu
* gnu/packages/emacs.scm (emacs-pyim): Fix error input name. Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-04gnu: emacs-slime: Update to 2.20.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-slime): Update to 2.20. Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-10-04gnu: clisp: Update to 2.49-60.Efraim Flashner
* gnu/packages/lisp.scm (clisp): Update to 2.49-60. [source]: Download mercurial repository, apply patch. [inputs]: Replace readline@6.2 with readline, add ncurses. [arguments]: Add multiple configure flags. Remove build phase to build in "src" directory. Remove more uses of a timestamp.
2017-10-04gnu: Standardise indentation of finance module imports.Christopher Baines
* gnu/packages/finance.scm (define-module): Use 2 space indentation.
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