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2017-03-10services: Create /var/log upon activation.Christopher Baines
When launching a container created with guix system container, the attempt to create /var/log/wtmp would fail, as /var/log did not exist. * gnu/services.scm (activation-script): Create /var/log Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-10services: Add exim-service-type.Carlo Zancanaro
* gnu/services/mail.scm (<exim-configuration>): New record type. (exim-computed-config-file, exim-shepherd-service, exim-activation, exim-etc, exim-profile): New procedures. (exim-service-type, %exim-accounts): New variables. * doc/guix.text (Mail Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-10gnu: hmmer: Build reproducibly.Ben J. Woodcroft
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file. * gnu/packages/bioinformatics.scm (hmmer): Use it.
2017-03-10gnu: Add sambamba.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New variables.
2017-03-10gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640].Leo Famulari
* gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
2017-03-09gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'.ng0
* gnu/packages/mail.scm (neomutt)[configure]: Add '--with-kyotocabinet' and '--with-lmdb'. [inputs]: Add 'lmdb' and 'kyotocabinet'. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: neomutt: Update to 20170306.ng0
* gnu/packages/mail.scm (neomutt): Update to 20170306. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09Revert "gnu: neomutt: Configure with 'lmdb' and 'tokyocabinet'."ng0
'kyotocabinet' is more current than tokyocabinet in development and supported in neomutt aswell. This reverts commit ef91e2b964ec0952698dd1bf7daf76624fed2145. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: hiawatha: Adjust description.ng0
* gnu/packages/web.scm (hiawatha)[description]: Adjust it. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: Add font-tamzen.ng0
* gnu/packages/fonts.scm (font-tamzen): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: btrfs-progs/static: Correct description.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs/static)[description]: Use the correct name of the btrfs-progs package and @command{} mark-up.
2017-03-09gnu: btrfs-progs: Update to 4.10.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.
2017-03-09gnu: ibus-anthy: Update to 1.5.9.Tobias Geerinckx-Rice
* gnu/packages/ibus.scm (ibus-anthy): Update to 1.5.9.
2017-03-09gnu: ibus: Update to 1.5.15.Tobias Geerinckx-Rice
* gnu/packages/ibus.scm (ibus): Update to 1.5.15.
2017-03-09gnu: pius: Update to 2.2.4.Tobias Geerinckx-Rice
* gnu/packages/gnupg.scm (pius): Update to 2.2.4.
2017-03-09gnu: youtube-dl: Update to 2017.03.07.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.07.
2017-03-09gnu: graphicsmagick: Build with 16 bit quantum depth.Arun Isaac
Octave requires graphicsmagick to be built with 16 bit quantum depth. * gnu/packages/imagemagick.scm (graphicsmagick)[arguments]: Add "--with-quantum-depth=16" and "--enable-quantum-library-names" to #:configure-flags. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09gnu: octave: Build with curl and graphicsmagick.Arun Isaac
* gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09gnu: xf86-input-libinput: Update to 0.25.0.Marius Bakke
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.25.0.
2017-03-09gnu: Add python2-larch.Arun Isaac
* gnu/packages/python.scm (python2-larch): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: Add python2-tracing.Arun Isaac
* gnu/packages/python.scm (python2-tracing): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: Add python2-ttystatus.Arun Isaac
* gnu/packages/python.scm (python2-ttystatus): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: Add python2-cliapp.Arun Isaac
* gnu/packages/python.scm (python2-cliapp): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: python-numpy-documentation: Use full git commit hash in submodule.Marius Bakke
* gnu/packages/python.scm (python-numpy-documentation, python2-numpy-documentation)[native-inputs]: Update hash of SCIPY-SPHINX-THEME. Fix indentation of a line.
2017-03-09gnu: Remove obsolete numpy comment.Marius Bakke
* gnu/packages/python.scm: Remove comment.
2017-03-09gnu: inetutils: Disable parallel tests.Marius Bakke
* gnu/packages/admin.scm (inetutils)[arguments]: Add #:parallel-tests? #f.
2017-03-09gnu: python-pandas: Really fix build on 32bit.Marius Bakke
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion with same-named test.
2017-03-09hydra: Really disable 32-to-64-bit cross-builds.Ludovic Courtès
Fixes <http://bugs.gnu.org/26022>. Reported by Efraim Flashner <efraim@flashner.co.il>. * build-aux/hydra/gnu-system.scm (hydra-jobs)[cross-jobs](from-32-to-64?): Check whether TARGET contains "64" rather than checking whether TARGET ends in "64", which is rarely the case. (same?): Add special case for armhf-linux.
2017-03-09gexp: Expose functions to allow creating derivation builders.Roel Janssen
* guix/gexp.scm: Add load-path-expression and gexp-modules to the public interface of the module. See <http://bugs.gnu.org/26023>.
2017-03-09gnu: Add rsnapshot.Thomas Danckaert
* gnu/packages/backup.scm (rsnapshot): New variable.
2017-03-09gnu: python-fake-factory: Add back missing patch file.Mark H Weaver
This reverts the removal of "python-fake-factory-fix-build-32bit.patch" by commit ce7911ddae5d30ba73c8c9552b7d4e71268e5db3. * gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2017-03-09gnu: inetutils: Set the $localstatedir.Leo Famulari
This is a followup to commit 6f5d28f9d05aaa9743b3aac6bceb2c6323122d2d. * gnu/packages/admin.scm (inetutils)[arguments]: Pass '--localstatedir=/var' to #:configure-flags.
2017-03-09gnu: icecat: Add fixes from upstream Firefox ESR 45.8.0.Mark H Weaver
Includes fixes for CVE-2017-5398, CVE-2017-5400, CVE-2017-5401, CVE-2017-5402, CVE-2017-5404, CVE-2017-5405, CVE-2017-5407, CVE-2017-5408, CVE-2017-5409, and CVE-2017-5410. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr45 repository.
2017-03-09gnu: icecat: Update to 45.7.0-gnu1.Mark H Weaver
* gnu/packages/gnuzilla.scm (icecat): Update to 45.7.0-gnu1. Remove patches included in 45.7.0.
2017-03-09utils: Use an idiom compatible with both 2.0 and 2.2.Ludovic Courtès
Fixes a regression introduced in 7447aa36e16fb77f75df4d3369db9c942615632e. Reported by Ricardo Wurmus. * guix/utils.scm: Revert 7447aa36e16fb77f75df4d3369db9c942615632e. Use #:prefix for (ice-9 iconv) to support both 2.0 and 2.2.
2017-03-09gnu: r: Remove obsolete configure flags.Ricardo Wurmus
* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
2017-03-09gnu: r: Update to 3.3.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r): Update to 3.3.3.
2017-03-08gnu: Add lensfun.Roel Janssen
* gnu/packages/photo.scm (lensfun): New variable.
2017-03-08utils: Make sure to use the right 'bytevector->string'.Ludovic Courtès
In Guile 2.2, (rnrs io ports) exports 'bytevector->string', which conflicts with that of (ice-9 iconv). * guix/utils.scm: Hide 'bytevector->string' from (rnrs io ports).
2017-03-08packages: Use PACKAGE@VERSION syntax when reporting ambiguities.Ludovic Courtès
* gnu/packages.scm (%find-package): Upon ambiguity, use the PACKAGE@VERSION syntax instead of 'package-full-name'.
2017-03-08list-runtime-roots: Bufferize the lsof pipe.Ludovic Courtès
* nix/scripts/list-runtime-roots.in (lsof-roots): Add 'setvbuf' call for PIPE.
2017-03-08ui: Don't use '%default-port-encoding' to set the encoding of string ports.Ludovic Courtès
* guix/ui.scm (right-arrow): Call 'set-port-encoding!' to set PORT's encoding; remove use of 'with-fluids'. This is for compatibility with Guile 2.2 where the encoding of string ports is not influenced by %DEFAULT-PORT-ENCODING. * tests/ui.scm ("show-manifest-transaction"): Likewise.
2017-03-08ui: Avoid '_' as a pattern variable in 'match'.Ludovic Courtès
* guix/ui.scm (fill-paragraph): Don't use '_' as a pattern variable since that is shadowed by the top-level '_' binding on Guile 2.2. (show-manifest-transaction): Likewise.
2017-03-08download: Update the Savannah mirror list.Ludovic Courtès
* guix/download.scm (%mirrors) <savannah>: Remove centervenus.com, which seems to be broken. Add download-mirror.sv.gnu.org as a last resort.
2017-03-08gnu: Add guile2.2-haunt.Ludovic Courtès
* gnu/packages/guile.scm (guile2.2-haunt): New variable.
2017-03-08gnu: Add guile2.2-reader.Ludovic Courtès
* gnu/packages/guile.scm (guile2.2-reader): New variable.
2017-03-08gnu: guile-reader: Update to 0.6.2.Ludovic Courtès
* gnu/packages/guile.scm (guile-reader): Update to 0.6.2. [arguments]: Remove.
2017-03-08tests: Avoid zero-expression 'begin' form.Ludovic Courtès
* tests/cran.scm ("description->package"): Add body after the expected pattern in 'match'.
2017-03-08hash: Close or flush sha256 output ports before calling their 'get' procedure.Ludovic Courtès
Slightly different buffering of custom binary output ports in Guile 2.1.7 would lead tests missing 'close-port' or 'force-output' to fail. * tests/hash.scm ("open-sha256-port, hello"): Add call to 'force-output' before call to 'get'. * tests/nar.scm ("write-file puts file in C locale collation order"): Call 'close-port' before calling 'get-hash'.
2017-03-08build: Unset 'NIX_BUILD_HOOK' when offloading support is missing.Ludovic Courtès
* build-aux/pre-inst-env.in: Export 'NIX_BUILD_HOOK' only when nix/scripts/offload is executable; unset it otherwise.
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