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2016-10-27gnu: python-urllib3: Update to 1.18.1.Marius Bakke
* gnu/packages/python.scm (python-urllib3): Update to 1.18.1. [home-page]: Use https URL.
2016-10-27tests: Test installation with a RAID root partition.Ludovic Courtès
* gnu/tests/install.scm (%raid-root-os, %raid-root-os-source) (%raid-root-installation-script, %test-raid-root-os): New variables.
2016-10-27file-systems: 'disk-partitions' detected partitions from mapped devices.Ludovic Courtès
Previously, partitions of mdadm- or cryptsetup-produced block devices would not be returned by 'disk-partitions'. * gnu/build/file-systems.scm (disk-partitions)[last-character]: New procedure. [partition?]: Add 'name' parameter and rewrite. Adjust caller. * gnu/build/file-systems.scm (ENOENT-safe): Silently ignore ENOMEDIUM.
2016-10-27tests: Add #:memory-size parameter for the command to run the installed OS.Ludovic Courtès
* gnu/tests/install.scm (qemu-command/writable-image): Add #:memory-size parameter and honor it.
2016-10-27mapped-devices: Use 'mdadm-static' in 'raid-device-mapping'.Ludovic Courtès
* gnu/system/mapped-devices.scm (open-raid-device, close-raid-device): Use MDADM-STATIC instead of MDADM. Use 'file-append'.
2016-10-27gnu: Add mdadm-static.Ludovic Courtès
* gnu/packages/linux.scm (mdadm-static): New variable.
2016-10-27gnu: libmikmod: Update to 3.3.10.Efraim Flashner
* gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
2016-10-27gnu: sdl2: Update to 2.0.5.Efraim Flashner
* gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
2016-10-27gnu: Use 'https' for libsdl urls.Efraim Flashner
* gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net) (sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https. [home-page]: Use https.
2016-10-27gnu: mcelog: Update to 144.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (mcelog): Update to 144.
2016-10-27gnu: btrfs-progs: Update to 4.8.2.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27gnu: gnupg: Add support for pcsc-lite.Mike Gerwitz
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite. [arguments]: Rename phase 'patch-config-files' to 'patch-paths'. Patch `scd/scdaemon.c' with absolute path of libpcsclite.so. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27gnu: Add pcsc-lite.Mike Gerwitz
* gnu/packages/security-token.scm (pcsc-lite): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27gnu: Add dbacl.ng0
* gnu/packages/textutils.scm (dbacl): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-27gnu: valgrind: Use 'modify-phases' syntax.Efraim Flashner
* gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases' syntax.
2016-10-27gnu: valgrind: Update to 3.12.0.Efraim Flashner
* gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
2016-10-27gnu: python-pathlib2: Add comment.Hartmut Goebel
As suggested by Efraim Flashner. * gnu/packages/python.scm (python-pathlib2): Add comment.
2016-10-26gnu: shotwell: Update to 0.25.0.Leo Famulari
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0. [inputs]: Add gcr.
2016-10-26gnu: vdirsyncer: Update to 0.14.0.Leo Famulari
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
2016-10-27tests: Test installation with store on a separate partition.Ludovic Courtès
This is a followup to 0f65f54ebd76324653fd5506a7dab42ee44d9255. * gnu/tests/install.scm (%separate-store-os, %separate-store-os-source) (%separate-store-installation-script, %test-separate-store-os): New variables.
2016-10-27tests: Use #:fallback? #t when building system tests.Ludovic Courtès
* build-aux/run-system-tests.scm (run-system-tests): Pass #:fallback? #t to 'set-build-options*'.
2016-10-27tests: Adjust pypi test to recent importer change.Ludovic Courtès
This is a followup to b5c347ad3d83ee580c111bd14c80b469b0dcb294. * tests/pypi.scm ("pypi->guix-package"): Expect 'propagated-inputs', not 'inputs'. ("pypi->guix-package, wheels"): Likewise.
2016-10-27tests: Skip 'pivot-root' test on Linux > 4.7.5.Ludovic Courtès
* tests/syscalls.scm ("pivot-root"): Skip when 'uname' returns a 'utsname:release' > 4.7.5.
2016-10-26gnu: Add lci.ng0
* gnu/packages/lolcode.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26gnu: Add autossh.Christopher Allan Webber
* gnu/packages/ssh.scm (autossh): New variable.
2016-10-26gnu: r: Update to 3.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r): Update to 3.3.1.
2016-10-26gnu: r-matrixstats: Update to 0.51.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
2016-10-26gnu: r-r-utils: Update to 2.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
2016-10-26gnu: r-irlba: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
2016-10-26gnu: r-codetools: Update to 0.2-15.Ricardo Wurmus
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
2016-10-26gnu: r-snow: Update to 0.4-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
2016-10-26gnu: r-backports: Update to 1.0.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
2016-10-26gnu: r-foreign: Update to 0.8-67.Ricardo Wurmus
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
2016-10-26gnu: r-cluster: Update to 2.0.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
2016-10-26gnu: r-acepack: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
2016-10-26gnu: r-r6: Update to 2.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
2016-10-26gnu: r-evaluate: Update to 0.10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
2016-10-26gnu: r-reshape2: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
2016-10-26gnu: r-stringi: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
2016-10-26gnu: r-matrix: Update to 1.2-7.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
2016-10-26gnu: r-colorspace: Update to 1.2-7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
2016-10-26gnu: r-jsonlite: Update to 1.1.Ricardo Wurmus
* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
2016-10-26gnu: r-curl: Update to 2.2.Ricardo Wurmus
* gnu/packages/web.scm (r-curl): Update to 2.2.
2016-10-26gnu: r-seqinr: Update to 3.3-3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
2016-10-26gnu: r-rcpparmadillo: Update to 0.7.500.0.0.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.500.0. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
2016-10-26gnu: armadillo: Update to 7.500.0.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
2016-10-26gnu: r-rmarkdown: Update to 1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1. [propagated-inputs]: Add r-evaluate, r-tibble.
2016-10-26gnu: bioperl-minimal: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
2016-10-26gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a.Marius Bakke
The fix from upstream did not apply cleanly due to many context changes. This was adapted by cloning mupdf 1.9a from git and fixing conflicts after applying our patches and cherry-picking upstream commit 1e03c06. This is a follow-up to 47a04fca999b91309d196afc9ebf4d8ac6f2083f. * gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
2016-10-26guix package: Display generation diffs.Roel Janssen
* guix/ui.scm (display-profile-content-diff): New variable. * guix/scripts/package.scm (process-query): Use display-profile-content-diff. In collaboration with Benz Schenk.
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