Age | Commit message (Collapse) | Author |
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* gnu/packages/web.scm (perl-gssapi): New variable.
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* gnu/packages/web.scm (perl-net-smtp-ssl): New variable.
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* gnu/packages/curl.scm (arguments): Disable test 1510.
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* gnu/packages/curl.scm (curl): Update to 7.43.0.
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* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
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* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
(slepc-complex-openmpi): New variables.
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* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
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* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
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* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
(mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
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* gnu/packages/maths.scm (metis): New variable.
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* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
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* gnu/packages/maths.scm (scalapack): New variable.
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* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
phase. Install esmumps libraries and headers in 'install phase.
(pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add
make parallelism.
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* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
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* gnu/packages/maths.scm (scotch): Update to 6.0.4.
[arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
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* gnu/packages/mpi.scm (openmpi): Upgrade to 1.8.5.
[native-inputs]: Add perl.
[arguments]: Add configure flags for thread support.
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* gnu/packages/mpi.scm (hwloc)[propagated-inputs]: Move numactl from here...
[inputs]: ...to here.
[arguments]: New 'refine-libnuma' phase.
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* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: New patch.
* gnu/packages/mpi.scm (hwloc): Upgrade to 1.10.1.
[source]: Use patch.
[propagated-inputs]: Remove libpci.
[inputs]: Add libpciaccess.
* gnu-system.am (dist_patch_DATA): Add patch.
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* gnu/packages/python.scm (python-mccabe)[license]: 'expat' ->
'license:expat'.
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* gnu/packages/python.scm (python-flake8, python2-flake8): New variables.
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* gnu/packages/python.scm (python-mccabe, python2-mccabe): New variables.
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* gnu/packages/python.scm (python-pyflakes, python2-pyflakes): New variables.
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* gnu/packages/python.scm (python-pep8, python2-pep8): New variables.
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* doc/environment-gdb.scm: New file.
* doc.am (EXTRA_DIST): Add it.
* doc/guix.texi (Invoking guix environment): Clarify wording of the first
example. Add a --ad-hoc example upfront. Add an example for '-e', and one
for '-l'.
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* gnu/packages/code.scm (withershins)[inputs]: Replace "gcc" with "libiberty".
[arguments]: Simplify "find-libiberty" phase.
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* gnu/packages/gcc.scm (make-libiberty, libiberty): New variables.
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* gnu/packages/statistics.scm (r): Update to 3.2.1.
* gnu/packages/patches/r-fix-15899.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
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* gnu/packages/bioinformatics.scm (blast+): New variable.
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* gnu/packages/code.scm (global): Update to 6.5.
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* gnu/packages/man.scm (help2man): Update to 1.47.1.
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* gnu/packages/parallel.scm (parallel): Update to 20150622.
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* gnu/packages/screen.scm (screen): Update to 4.3.1.
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* gnu/packages/texinfo.scm (texinfo-6): New variable.
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* gnu/packages/gcc.scm (gcc-4.8): Update to 4.8.5.
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* doc/guix.texi (The Store Monad): Add funny quote about "running" a monadic
value.
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* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
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* gnu/packages/synergy.scm (synergy)[version]: Upgrade to 1.7.3
[source]: Use github for source download. Add snippet to remove
bundled source and binaries.
[inputs]: Add openssl.
[arguments]: Copy example configuration files to out during 'install
phase.
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* gnu/packages/compression.scm (sfarkxtc): New variable.
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* gnu/packages/compression.scm (sfarklib): New variable.
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* gnu/packages/audio.scm (guitarix): New variable.
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* gnu/packages/audio.scm (ardour): Update to 4.1.
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* gnu/packages/compression.scm (libtar): New variable.
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* gnu/package/pv.scm (pv): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Alex Kost <alezost@gmail.com>
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* gnu/packages/commencement.scm (gcc-boot0, cross-gcc-wrapper,
libstdc++, gcc-final): Refer to GCC instead of GCC-4.9.
* gnu/packages/cross-base.scm (%xgcc): New variable.
(cross-gcc-arguments, cross-gcc): Refer to %XGCC instead of GCC-4.9.
* gnu/packages/llvm.scm (clang-from-llvm): Refer to GCC instead of GCC-4.9.
* gnu/packages/make-bootstrap.scm (package-with-relocatable-glibc,
%gcc-static, %gcc-stripped): Likewise.
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* gnu/packages/video.scm (youtube-dl): Update to 2015.06.25.
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* gnu/packages/python.scm (python2-fastlmm): New variable.
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* gnu/packages/python.scm (python2-pysnptools): New variable.
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* emacs/guix-base.el (guix-define-buffer-type): Move common key bindings
from here...
(guix-root-map): ... to here. New variable.
* emacs/guix-info.el (guix-info-mode-map): Use it.
* emacs/guix-list.el (guix-list-mode-map): Use it.
* doc/emacs.texi (Emacs Keymaps): Document it.
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* gnu/packages/nettle.scm (nettle)[arguments]: Add 'disable-ifunc-init-method'
phase.
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