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2019-01-13Merge branch 'master' into stagingMarius Bakke
2019-01-13gnu: sudo: Update to 1.8.27.Marius Bakke
* gnu/packages/admin.scm (sudo): Update to 1.8.27.
2019-01-13gnu: libassuan: Update to 2.5.2.Marius Bakke
* gnu/packages/gnupg.scm (libassuan): Update to 2.5.2.
2019-01-13gnu: libgxps: Update to 0.3.1.Marius Bakke
* gnu/packages/gnome.scm (libgxps): Update to 0.3.1.
2019-01-13gnu: libqmi: Update to 1.22.0.Marius Bakke
* gnu/packages/freedesktop.scm (libqmi): Update to 1.22.0.
2019-01-13gnu: libmbim: Update to 1.18.0.Marius Bakke
* gnu/packages/freedesktop.scm (libmbim): Update to 1.18.0.
2019-01-13gnu: libsodium: Update to 1.0.17.Marius Bakke
* gnu/packages/crypto.scm (libsodium): Update to 1.0.17.
2019-01-13gnu: exempi: Update to 2.5.0.Marius Bakke
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.0.
2019-01-13gnu: seabios: Update to 1.12.0.Marius Bakke
* gnu/packages/firmware.scm (seabios): Update to 1.12.0.
2019-01-13gnu: httpd: Update to 2.4.37.Marius Bakke
* gnu/packages/web.scm (httpd): Update to 2.4.37.
2019-01-13gnu: nasm: Update license.Marius Bakke
* gnu/packages/assembly.scm (nasm)[license]: Change to BSD-2.
2019-01-13gnu: nasm: Update home page.Marius Bakke
* gnu/packages/assembly.scm (nasm)[home-page]: Use HTTPS.
2019-01-13gnu: libgphoto2: Update to 2.5.22.Marius Bakke
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.22.
2019-01-13gnu: re2: Update to 2019-01-01.Marius Bakke
* gnu/packages/regex.scm (re2): Update to 2019-01-01.
2019-01-13gnu: libsecret: Update to 0.18.7.Marius Bakke
* gnu/packages/gnome.scm (libsecret): Update to 0.18.7. [native-inputs]: Remove INTLTOOL. Add GETTEXT-MINIMAL.
2019-01-13gnu: fluidsynth: Update to 2.0.3.Marius Bakke
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.3.
2019-01-13gnu: rofi: Update to 1.5.2.Marius Bakke
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.2.
2019-01-13gnu: xscreensaver: Update to 5.42.Marius Bakke
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.42. [arguments]: Add "CFLAGS=-std=c99" to #:make-flags.
2019-01-13gnu: libcmis: Update to 0.5.2.Marius Bakke
* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.2. [source](uri): Use XZ-compressed tarball. [arguments]: Remove #:phases. Don't pass "--disable-werror" in #:configure-flags.
2019-01-13gnu: http-parser: Update to 2.9.0.Marius Bakke
* gnu/packages/web.scm (http-parser): Update to 2.9.0.
2019-01-13gnu: http-parser: Download from git.Marius Bakke
* gnu/packages/web.scm (http-parser)[source]: Change to GIT-FETCH.
2019-01-13gnu: libetonyek: Adjust inputs.Marius Bakke
* gnu/packages/libreoffice.scm (libetonyek)[native-inputs]: Remove LIBLANGTAG. Move GLM and MDDS to ... [inputs]: ... here. [propagated-inputs]: Add LIBLANGTAG and ZLIB.
2019-01-13gnu: libetonyek: Update to 0.1.9.Marius Bakke
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.9. [arguments]: Remove #:phases.
2019-01-13gnu: libcdr: Update to 0.1.5.Marius Bakke
* gnu/packages/libreoffice.scm (libcdr): Update to 0.1.5. [source](uri): Download over HTTPS. [arguments]: Remove.
2019-01-12gnu: tintin++: Update to 2.01.5.Kei Kebreau
* gnu/packages/games.scm (tintin++): Update to 2.01.5.
2019-01-12gnu: r-ruvseq: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
2019-01-12gnu: r-inspect: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1. [propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment, and r-txdb-mmusculus-ucsc-mm9-knowngene.
2019-01-12gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New variable.
2019-01-12gnu: Add r-plgem.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-plgem): New variable.
2019-01-12gnu: r-rots: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
2019-01-12gnu: r-glimma: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
2019-01-12gnu: r-goseq: Update to 1.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
2019-01-12gnu: r-chippeakanno: Update to 3.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
2019-01-12gnu: r-rtracklayer: Update to 1.42.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.1.
2019-01-12gnu: r-scater: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.1.
2019-01-12gnu: r-singlecellexperiment: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.1.
2019-01-12gnu: r-rhdf5lib: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.2.
2019-01-12gnu: r-hdf5array: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.1.
2019-01-12gnu: r-qvalue: Update to 2.14.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.1.
2019-01-12gnu: r-gviz: Update to 1.26.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.4.
2019-01-12gnu: r-biovizbase: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.1.
2019-01-12gnu: r-ensembldb: Update to 2.6.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.3.
2019-01-12gnu: r-dirichletmultinomial: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.1.
2019-01-12gnu: r-gage: Update to 2.32.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.1.
2019-01-12gnu: r-annotationhub: Update to 2.14.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.2.
2019-01-12gnu: r-edaseq: Update to 2.16.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.3. [propagated-inputs]: Add r-biocmanager.
2019-01-12gnu: r-deseq: Update to 1.34.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.1.
2019-01-12gnu: r-msnid: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.1.
2019-01-12gnu: r-msnbase: Update to 2.8.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.3.
2019-01-12gnu: r-mzid: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.20.1.
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