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2018-07-27gnu: snakemake: Add missing dependencies.Ricardo Wurmus
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie, python-docutils, python-jinja2, python-jsonschema, and python-networkx.
2018-07-27gnu: Add python-datrie.Ricardo Wurmus
* gnu/packages/python.scm (python-datrie): New variable.
2018-07-27gnu: imagemagick: Update to 6.9.10-8.Marius Bakke
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-8.
2018-07-27gnu: mbedtls-apache: Update to 2.7.5.Marius Bakke
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.5.
2018-07-27gnu: snakemake: Update to 5.2.0.Ricardo Wurmus
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
2018-07-27gnu: guile-sdl2: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.0. [arguments]: Remove "patch-makefile" phase.
2018-07-27import: hackage: Emit native-inputs in the importer.Danny Milosavljevic
* guix/import/cabal.scm (cabal-custom-setup-dependencies): Export. (cabal-package-custom-setup): Export. (<cabal-package>): New field "custom-setup". (make-cabal-package): Modify. (eval-cabal): Modify. * guix/import/hackage.scm (cabal-dependencies->names): Factor out... (cabal-test-dependencies->names): ...this. (cabal-custom-setup-dependencies->names): New procedure. (hackage-module->sexp): Modify.
2018-07-27gnu: tiled: Update to 1.1.6.Kei Kebreau
* gnu/packages/game-development.scm (tiled): Update to 1.1.6. [arguments]: Substitute invoke for system*.
2018-07-26gnu: python-xsge: Update to 2018.02.26.Kei Kebreau
* gnu/packages/game-development.scm (python-xsge, python2-xsge): Update to 2018.02.26. [arguments]: Substitute invoke for system*.
2018-07-26gnu: freeciv: Update to 2.6.0.Kei Kebreau
* gnu/packages/games.scm (freeciv): Update to 2.6.0.
2018-07-26gnu: ecryptfs-utils: Patch more hardcoded paths.Brendan Tildesley
* gnu/packages/linux.scm (ecryptfs-utils): [arguments]: Add an additional file to be patched that was missing in the last fix. Ecryptfs will now find the umount binary path as well as mount and others. Re-sort the list of files to be substituted. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-07-26gnu: cabextract: Delete bundled libmspack.Marius Bakke
* gnu/packages/compression.scm (cabextract)[source](modules, snippet): New field.
2018-07-26gnu: cabextract: Update to 1.7.Marius Bakke
* gnu/packages/compression.scm (cabextract): Update to 1.7.
2018-07-26gnu: fuse: Update source hash.Marius Bakke
The fuse 2.9.8 tarball and signature was modified in place. Both are signed by the same key, at different dates, and the only differences are directory timestamps and a ChangeLog update. * gnu/packages/linux.scm (fuse)[source](sha256): Update.
2018-07-26gnu: make-u-boot-package: Don't install "sunxi-spl-with-ecc.bin".Danny Milosavljevic
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]<#:phases> [install]: Don't install "sunxi-spl-with-ecc.bin".
2018-07-26gnu: Add ruby-net-scp.Danny Milosavljevic
* gnu/packages/ruby.scm (ruby-net-scp): New variable.
2018-07-26gnu: translate-shell: Fix .el install directory.Efraim Flashner
* gnu/packages/dictionaries.scm (translate-shell)[arguments]: Change the install directory during the custom 'emacs-install phase to match with other emacs .el packages.
2018-07-26gnu: java-picard: Fix manifest.Gábor Boskovits
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Adjust phase 'edit-classpath-in-manifest for the new manifest generation code.
2018-07-26gnu: python-qsintilla: Fix building.Efraim Flashner
* gnu/packages/qt.scm (python-qscintilla)[arguments]: Extend custom 'configure phase to also patch the 'installed.txt' file.
2018-07-26gnu: linux-libre: Update to 4.17.10.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.10. (%linux-libre-hash): Update hash.
2018-07-26gnu: linux-libre@4.14: Update to 4.14.58.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.58. (%linux-libre-4.14-hash): Update hash.
2018-07-26gnu: linux-libre@4.9: Update to 4.9.115.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.115.
2018-07-26gnu: linux-libre@4.4: Update to 4.4.144.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.144.
2018-07-25gnu: Remove dangling variable.Marius Bakke
* gnu/packages/xml.scm (libxslt/fixed): Remove.
2018-07-25gnu: Update cabextract.org.uk home pages.Marius Bakke
* gnu/packages/compression.scm (libmspack, cabextract)[home-page, source]: Use HTTPS.
2018-07-25gnu: libmspack: Don't build static library.Marius Bakke
* gnu/packages/compression.scm (libmspack)[arguments]: Add #:configure-flags.
2018-07-25gnu: libmspack: Update to 0.7.Marius Bakke
* gnu/packages/compression.scm (libmspack): Update to 0.7.
2018-07-25gnu: hplip-minimal: Simplify expression.Marius Bakke
* gnu/packages/cups.scm (hplip-minimal): Remove unnecessary quotes.
2018-07-25gnu: libjpeg-turbo: Don't build static libraries.Marius Bakke
* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add "--disable-static" to #:configure-flags.
2018-07-25gnu: libjpeg-turbo: Update home page.Marius Bakke
* gnu/packages/image.scm (libjpeg-turbo)[home-page]: Use HTTPS.
2018-07-25gnu: audit: Don't build static libraries.Marius Bakke
* gnu/packages/admin.scm (audit)[arguments]: Add "--disable-static" to #:configure-flags.
2018-07-25gnu: audit: Update to 2.8.4.Marius Bakke
* gnu/packages/admin.scm (audit): Update to 2.8.4. [arguments]: Remove #:phases.
2018-07-25Merge remote-tracking branch 'origin/master' into qt-updatesEfraim Flashner
2018-07-25gnu: qt: Disable parallel building.Efraim Flashner
* gnu/packages/qt.scm (qt)[arguments]: Disable parallel-build.
2018-07-25gnu: qt: Apply changes from qtbase.Efraim Flashner
* gnu/packages/qt.scm (qt)[arguments]: In custom 'configure phase, add flags to specify custom destination directories. Use system pcre. Add flags to support older versions of the linux kernel. Add custom 'patch-mkspecs phase to search in their new location. Add custom 'patch-paths phase to prevent dynamic loading of certain libraries. [native-search-paths]: New field. [license]: Update it.
2018-07-25Revert "gnu: quassel: Fix building with Qt 5.11."Efraim Flashner
This reverts commit 68ddfb2e8d43de248a64a9baf34ff7002053ede6. This is no longer necessary after the update to Qt-5.11.1.
2018-07-25gnu: Add pscircle.Oleg Pykhalov
* gnu/packages/admin.scm (pscircle): New variable.
2018-07-25gnu: Add hplip-minimal.Efraim Flashner
* gnu/packages/cups.scm (hplip-minimal): New variable. * gnu/packages/scanner.scm (sane-backends)[inputs]: Replace hplip with hplip-minimal. * doc/guix.texi (Printing Services): Change example code to use hplip-minimal in place of hplip. Add note explaining when use hplip.
2018-07-24gnu: syncthing: Update to 0.14.49.Leo Famulari
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.49. [source]: Remove obsolete patch. [inputs]: Remove go-github-com-kardianos-osext. * gnu/packages/patches/syncthing-fix-crash.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-07-24gnu: go-github-com-syncthing-notify: Update to 0.0.0-1.cdf89c4.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-syncthing-notify): Update to 0.0.0-1.cdf89c4.
2018-07-24gnu: go-github-com-thejerf-suture: Update to 2.0.3-0.3f1fb62.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-thejerf-suture): Update to 2.0.3-0.3f1fb62.
2018-07-25gnu: java-tomcat: Strip timestampsBjörn Höfling
* gnu/package/web.scm (java-tomcat)[arguments]: Add phase 'strip timestamps. Makes build deterministic. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25gnu: java-tomcat: Remove bundled jars.Björn Höfling
* gnu/packages/web.scm (java-tomcat)[source]: Add snippet to remove bundled jars. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25gnu: java-tomcat: Update to 8.5.32.Björn Höfling
* gnu/packages/web.scm (java-tomcat): Update to 8.5.32. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25gnu: java: Use java-javaee-servletapi instead of java-tomcat.Björn Höfling
* gnu/packages/java.scm(java-eclipse-sisu-inject)[inputs]: Remove java-tomcat, add java-javaee-servletapi. (logback-core)[inputs]: Likewise. * gnu/packages/maven.scm (maven-wagon-provider-test)[inputs]: Likewise. * gnu/packages/web.scm (java-eclipse-jetty-webapp)[inputs]: Likewise. (java-eclipse-jetty-server)[inputs]: Likewise. (java-eclipse-jetty-http)[inputs]: Likewise. (java-eclipse-jetty-jmx)[inputs]: Likewise. (java-eclipse-jetty-io)[inputs]: Likewise. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25gnu: Add java-javaee-servletapi.Björn Höfling
* gnu/packages/java.scm (java-javaee-servletapi): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25gnu: java: Use java-classpathx-servletapi instead of java-tomcat where possible.Björn Höfling
* gnu/package/java.scm (java-commons-jxpath)[inputs]: Remove java-tomcat, add java-classpathx-servletapi. (java-guice-servlet)[inputs]: Likewise. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25gnu: java-logback-core: Add file-name field.Björn Höfling
* gnu/package/java.scm (java-logback-core)[source]: Add file-name field. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-25gnu: java-guice: Remove jars.Björn Höfling
* gnu/packages/java.scm (java-guice)[source]: Add snippet to delete jar-files. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-07-24gnu: fuse: Update to 2.9.8 [fixes CVE-2018-10906].Marius Bakke
* gnu/packages/linux.scm (fuse): Update to 2.9.8.