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2020-06-16gnu: python-ipython: Use python-prompt-toolkit-2.Ricardo Wurmus
This prevents conflicting variants of python-prompt-toolkit from being installed, which prevented jupyter from being installed. * gnu/packages/python-xyz.scm (python-ipython)[propagated-inputs]: Replace python-prompt-toolkit with python-prompt-toolkit-2. (python-widgetsnbextension)[propagated-inputs]: Do not use prompt-toolkit-2-instead-of-prompt-toolkit on python-ipykernel. (python-ipywidgets)[propagated-inputs]: Do not use prompt-toolkit-2-instead-of-prompt-toolkit on python-ipython. (python-jupyter-console)[propagated-inputs]: Do not use prompt-toolkit-2-instead-of-prompt-toolkit on python-ipykernel. (prompt-toolkit-2-instead-of-prompt-toolkit): Remove variable. * gnu/packages/machine-learning.scm (python-iml)[propagated-inputs]: Do not use prompt-toolkit-2-instead-of-prompt-toolkit on python-ipython.
2020-06-16installer: final: Remove restart-service procedure.Mathieu Othacehe
* gnu/installer/final.scm (umount-cow-store): Remove "restart-service" that is now provided by (gnu services herd).
2020-06-16gnu: libmateweather: Fix tests.Mathieu Othacehe
Apply the following upstream fix: https://github.com/mate-desktop/libmateweather/commit/ea13e06563fb5fa53f8a9643156a64825e986acb. * gnu/packages/mate.scm (libmateweather)[source]: Fix tests by renaming America/Godthab timezone to America/Nuuk.
2020-06-16maint: "make authenticate" behaves like 'guix pull' by default.Ludovic Courtès
* build-aux/git-authenticate.scm (%use-historical-authorizations?) (%introductory-commit): New variables. * build-aux/git-authenticate.scm (git-authenticate): Use pass the empty list as #:default-authorizations when %USE-HISTORICAL-AUTHORIZATIONS? is false.
2020-06-16time-machine: Add '--disable-authentication'.Ludovic Courtès
* guix/inferior.scm (cached-channel-instance): Add #:authenticate? and pass it to 'latest-channel-instances'. * guix/scripts/time-machine.scm (show-help, %options): Add '--disable-authentication'. (%default-options): Add 'authenticate-channels?'. (guix-time-machine): Honor it.
2020-06-16pull: Add '--disable-authentication'.Ludovic Courtès
* guix/channels.scm (latest-channel-instance): Add #:authenticate? and honor it. (latest-channel-instances): Likewise. * guix/scripts/pull.scm (%default-options): Add 'authenticate-channels?'. (show-help, %options): Add '--disable-authentication'. (guix-pull): Pass #:authenticate? to 'latest-channel-instances'. * doc/guix.texi (Invoking guix pull): Document it.
2020-06-16channels: Automatically add introduction for the official 'guix' channel.Ludovic Courtès
This is useful when people run "guix time-machine -C channels.scm", where 'channels.scm' misses channel introductions. * guix/channels.scm (%default-channel-url): New variable. (%default-channels): Use it. (ensure-default-introduction): New procedure. (latest-channel-instance): Call it.
2020-06-16.guix-channel: Add 'keyring-reference'.Ludovic Courtès
* .guix-channel: Add 'keyring-reference'.
2020-06-16channels: Make 'validate-pull' call right after clone/pull.Ludovic Courtès
This should come before patching, authentication, etc. * guix/channels.scm (latest-channel-instance): Add #:validate-pull parameter and honor it. Return a single value: the instance. (ensure-forward-channel-update): Change 'instance' parameter to 'commit' and adjust accordingly. (latest-channel-instances): Adjust to 'latest-channel-instance' changes. * guix/scripts/pull.scm (warn-about-backward-updates): Change 'instance' parameter to 'commit' and adjust accordingly. * tests/channels.scm ("latest-channel-instances #:validate-pull"): Likewise.
2020-06-16channels: 'latest-channel-instance' authenticates Git checkouts.Ludovic Courtès
Fixes <https://bugs.gnu.org/22883>. * guix/channels.scm (<channel>)[introduction]: New field. (<channel-introduction>): New record type. (%guix-channel-introduction): New variable. (%default-channels): Use it. (<channel-metadata>)[keyring-reference]: New field. (%default-keyring-reference): New variable. (read-channel-metadata, read-channel-metadata-from-source): Initialize the 'keyring-reference' field. (commit-short-id, verify-introductory-commit) (authenticate-channel): New procedures. (latest-channel-instance): Call 'authenticate-channel' when CHANNEL has an introduction. * tests/channels.scm (gpg+git-available?, commit-id-string): New procedures. ("authenticate-channel, wrong first commit signer"): ("authenticate-channel, .guix-authorizations"): New tests. * doc/guix.texi (Invoking guix pull): Mention authentication.
2020-06-16tests: Move OpenPGP helpers to (guix tests gnupg).Ludovic Courtès
* tests/git-authenticate.scm (key-id): Remove. (%ed25519-public-key-file, %ed25519-secret-key-file) (%ed25519bis-public-key-file, %ed25519bis-secret-key-file) (read-openpgp-packet, key-fingerprint): Move to... * guix/tests/gnupg.scm: ... here.
2020-06-16git-authenticate: 'authenticate-commits' takes a #:keyring parameter.Ludovic Courtès
* guix/git-authenticate.scm (authenticate-commits): Add #:keyring parameter.
2020-06-16git-authenticate: Cache takes a key parameter.Ludovic Courtès
* guix/git-authenticate.scm (authenticated-commit-cache-file) (cache-authenticated-commit, previously-authenticated-commits): Add 'key' parameter and honor it. * build-aux/git-authenticate.scm (git-authenticate): Pass "channels/guix" as the key.
2020-06-16doc: Recommend "make authenticate" after ./bootstrap.Ludovic Courtès
* doc/contributing.texi (Building from Git): Move "make authenticate" instructions below.
2020-06-16build-system: cmake: Add substitutable keyword.Efraim Flashner
* guix/build-system/cmake.scm (cmake-build, cmake-cross-build): Add substitutable keyword.
2020-06-16gnu: nix: Look for configuration in /etc.Tobias Geerinckx-Rice
Fixes <http://issues.guix.gnu.org/41704>. * gnu/packages/package-management.scm (nix)[arguments]: Add ‘--sysconfdir=/etc’ configure flag and override it during installation. Requested-and-tested-by: Peng Mei Yu <pengmeiyu@riseup.net>
2020-06-16pack: Add zstd compressor.Tobias Geerinckx-Rice
* guix/scripts/pack.scm (%compressors): Add zstd. * doc/guix.texi (Invoking guix pack): Document it.
2020-06-16gnu: emacs-god-mode: Update to 2.17.0.Ricardo Wurmus
* gnu/packages/emacs-xyz.scm (emacs-god-mode): Update to 2.17.0.
2020-06-16gnu: bsnes: Remove unnecessary inputs.Pierre Neidhardt
* gnu/packages/emulators.scm (bsnes)[inputs]: Remove gt+-2 and libx11.
2020-06-16gnu: Add rust-nom-5.Efraim Flashner
* gnu/packages/crates-io.scm (rust-nom-5): New variable. (rust-nom-4.2): Inherit from rust-nom-5.
2020-06-16gnu: Add rust-lexical-core-0.7.Efraim Flashner
* gnu/packages/crates-io.scm (rust-lexical-core-0.7): New variable. (rust-lexical-core-0.4): Inherit from rust-lexical-core-0.7.
2020-06-16gnu: Add rust-static-assertions-1.Efraim Flashner
* gnu/packages/crates-io.scm (rust-static-assertions-1): New variable. (rust-static-assertions-0.3): Inherit from rust-static-assertions-1.
2020-06-16etc: Add committer script.Ricardo Wurmus
* etc/committer.scm.in: New file. * configure.ac: Configure it.
2020-06-16gnu: Add bsnes.Pierre Neidhardt
* gnu/packages/emulators.scm (bsnes): New variable.
2020-06-16gnu: r-xgboost: Update to 1.1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-xgboost): Update to 1.1.1.1.
2020-06-16gnu: r-genenet: Update to 1.2.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-genenet): Update to 1.2.15.
2020-06-16gnu: r-performance: Update to 0.4.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-performance): Update to 0.4.7.
2020-06-16gnu: r-abn: Update to 2.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-abn): Update to 2.2.1. [propagated-inputs]: Add r-boot, r-brglm, r-entropy, and r-moments.
2020-06-16gnu: r-vioplot: Update to 0.3.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.5. [native-inputs]: Add r-knitr.
2020-06-16gnu: r-circlize: Update to 0.4.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): Update to 0.4.10.
2020-06-16gnu: Add r-entropy.Ricardo Wurmus
* gnu/packages/cran.scm (r-entropy): New variable.
2020-06-16gnu: Add r-brglm.Ricardo Wurmus
* gnu/packages/cran.scm (r-brglm): New variable.
2020-06-16gnu: Add r-profilemodel.Ricardo Wurmus
* gnu/packages/cran.scm (r-profilemodel): New variable.
2020-06-16gnu: emacs-yasnippet: Clean-up package definition.Maxim Cournoyer
An old snippet was causing the build to fail when using Emacs 27. * gnu/packages/emacs-xyz.scm (emacs-yasnippet)[source]: Use git-file-name, and remove obsolete snippet. [phases]{home}: New phase. This allows the rebindings test to pass. {make-tests-writable, delete-rebinding-test}: Remove phases. [description]: Re-indent.
2020-06-16gnu: volk: Improve description mark-up.Tobias Geerinckx-Rice
* gnu/packages/engineering.scm (volk)[description]: Substitute @acronym for the less appropriate @code.
2020-06-16gnu: volk: Fix typo in description.Tobias Geerinckx-Rice
* gnu/packages/engineering.scm (volk)[description]: Fix typo.
2020-06-16gnu: inxi-minimal: Update to 3.1.03-1.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (inxi-minimal): Update to 3.1.03-1.
2020-06-16gnu: tup: Update to 0.7.9.Tobias Geerinckx-Rice
* gnu/packages/build-tools.scm (tup): Update to 0.7.9.
2020-06-15doc: Clarify 'hurd-vm' and 'childhurd' names.Jan (janneke) Nieuwenhuizen
Suggested by Maxim Cournoyer via IRC. * doc/guix.texi (The Hurd in a Virtual Machine): Explicitly mention that hurd-vm and childhurd are two names for this service.
2020-06-15gnu: glade3: Enable tests.Arun Isaac
* gnu/packages/gnome.scm (glade3)[arguments]: Enable tests. Add custom pre-check phase. [native-inputs]: Add hicolor-icon-theme and xorg-server-for-tests.
2020-06-15ui: Use package-description-string.Arun Isaac
* guix/ui.scm (package->recutils): Use package-description-string instead of package-description and P_.
2020-06-15ui: Do not translate package synopsis a second time.Arun Isaac
* guix/ui.scm (package->recutils): package-synopsis-string already returns a translated string. Do not attempt to translate it again.
2020-06-15ui: Cut off search early if any regexp does not match.Arun Isaac
* guix/ui.scm (relevance): When one of the regexps does not match, cut off early and return 0. Do not try to match the remaining regexps.
2020-06-15gnu: cuirass: Update to 0.0.1-32.3db603c.Mathieu Othacehe
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-32.3db603c.
2020-06-15ci: Add build-products id field and export accessors.Mathieu Othacehe
* guix/ci.scm (build-product?, build-product-id, build-product-type, build-product-file-size, build-product-path): Export them, [id]: new field.
2020-06-15ci: Add status option to "latest-builds".Mathieu Othacehe
* guix/ci.scm (latest-builds): Add "status" option.
2020-06-15download: Remove usa-mirror.go-parts.com mirror.Tobias Geerinckx-Rice
It incorrectly redirects 404s (at least) to the commercial home page. * guix/download.scm (%mirrors): Remove usa-mirror.go-parts.com URLs.
2020-06-15gnu: volk: Make retained references non-native inputs.Tobias Geerinckx-Rice
* gnu/packages/engineering.scm (volk)[native-inputs]: Move python-wrapper and python-mako… [inputs]: …here.
2020-06-15gnu: volk: Update to 2.3.0.Tobias Geerinckx-Rice
* gnu/packages/engineering.scm (volk): Update to 2.3.0.
2020-06-15gnu: r-limma: Update to 3.44.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.44.3.
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