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2016-10-19container: Allow 'container-excursion' to the same namespaces.Ludovic Courtès
Before that, 'container-excursion' would call 'setns' even when the target namespace is the one the caller is already in, which would fail. * gnu/build/linux-container.scm (container-excursion): Introduce 'source' and 'target'. Compare the result of 'readlink' on these instead of comparing file descriptors to decide whether to call 'setns'. * tests/containers.scm ("container-excursion, same namespace"): New test.
2016-10-19gnu: Add r-biocstyle.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biocstyle): New variable.
2016-10-19gnu: Add r-biocviews.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biocviews): New variable.
2016-10-19gnu: Add iperf.Benz Schenk
* gnu/packages/networking.scm (iperf): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-19gnu: python-dateutil, python-dateutil-2: Update to new home-page.Hartmut Goebel
* gnu/packages/python.scm (python-dateutil, python2-dateutil, python-dateutil-2, python2-dateutil-2)[home-page]: Update URL.
2016-10-19gnu: Add r-optparse.Roel Janssen
* gnu/packages/bioinformatics.scm (r-optparse): New variable.
2016-10-19gnu: Add r-getopt.Roel Janssen
* gnu/packages/bioinformatics.scm (r-getopt): New variable.
2016-10-19gnu: Add GHC 8.0.1.Federico Beffa
* gnu/packages/haskell.scm (ghc-8): New variable.
2016-10-19gnu: Add ghc-hashtables.Federico Beffa
* gnu/packages/haskell.scm (ghc-hashtables): New variable.
2016-10-19gnu: Add ghc-easyplot.Federico Beffa
* gnu/packages/haskell.scm (ghc-easyplot): New variable.
2016-10-19gnu: Add ghc-hmatrix-gsl-stats.Federico Beffa
* gnu/packages/haskell.scm (ghc-hmatrix-gsl-stats): New variable.
2016-10-19gnu: Add ghc-hmatrix-special.Federico Beffa
* gnu/packages/haskell.scm (ghc-hmatrix-special): New variable.
2016-10-19gnu: Add ghc-hmatrix-gsl.Federico Beffa
* gnu/packages/haskell.scm (ghc-hmatrix-gsl): New variable.
2016-10-19gnu: Add ghc-hmatrix.Federico Beffa
* gnu/packages/haskell.scm (ghc-hmatrix): New variable.
2016-10-19gnu: Add ghc-storable-complex.Federico Beffa
* gnu/packages/haskell.scm (ghc-storable-complex): New variable.
2016-10-19gnu: Add chez-fmt.Federico Beffa
* gnu/packages/chez.scm (chez-fmt): New variable.
2016-10-19gnu: Add chez-irregex.Federico Beffa
* gnu/packages/chez.scm (chez-irregex): New variable.
2016-10-19gnu: Add chez-matchableFederico Beffa
* gnu/packages/chez.scm (chez-matchable): New variable.
2016-10-19gnu: Add chez-socketsFederico Beffa
* gnu/packages/chez.scm (chez-sockets): New variable.
2016-10-19gnu: Add chez-webFederico Beffa
* gnu/packages/chez.scm (chez-web): New variable.
2016-10-19gnu: Add chez-srfi.Federico Beffa
* gnu/packages/chez.scm (chez-srfi): New variable.
2016-10-19gnu: chez-scheme: Move to new module.Federico Beffa
* gnu/packages/scheme.scm (chez-scheme, nanopass, stex): Move variables ... * gnu/packages/chez.scm (chez-scheme, nanopass, stex): ... here. New module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
2016-10-19gnu: chez-scheme: Fix i686 build.Federico Beffa
* gnu/packages/scheme.scm (chez-scheme): Add 'configure-flags', generalize 'configure' phase and simplify 'install-doc' phase.
2016-10-19gnu: chez-scheme: Add search-path.Federico Beffa
* gnu/packages/scheme.scm (chez-scheme)[native-search-paths]: New field.
2016-10-18build: Remove reference to nonexistant patch file.Christopher Allan Webber
* gnu/local.mk: Remove reference to kobodeluxe-spelling.patch, which was removed during a revision to the submitted kobodeluxe package.
2016-10-18gnu: kobodeluxe: Indicate origin of kobodeluxe-paths.patch.Christopher Allan Webber
* gnu/packages/patches/kobodeluxe-paths.patch: Update header, pointing to Debian tarball for provenance.
2016-10-18gnu: mariadb: Update to 10.1.18.Leo Famulari
* gnu/packages/databases.scm (mariadb): Update to 10.1.18.
2016-10-18gnu: mysql: Update to 5.7.16.Leo Famulari
* gnu/packages/databases.scm (mysql): Update to 5.7.16.
2016-10-18gnu: Add kobodeluxe.Stephen Webber
* gnu/packages/games.scm (kobodeluxe): New variable. * gnu/packages/patches/kobodeluxe-paths.patch: New file. * gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch: New file. * gnu/packages/patches/kobodeluxe-const-charp-conversion.patch: New file. * gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch: New file. * gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch: New file. * gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2016-10-18gnu: torsocks: Update to 2.2.0.ng0
* gnu/packages/patches/torsocks-dns-test.patch: Delete file. * gnu/local.mk: Remove it. * gnu/packages/tor.scm (torsocks): Update to 2.2.0. [source]: Remove patch. Change method from 'git-fetch' to 'url-fetch'. Remove 'file-name'. [arguments]: Remove 'bootstrap' phase. [native-inputs]: Remove autoconf, automake and libtool. Also remove obsoleted perl-test-harness. [home-page]: Use https URL. (define-module): Don't import perl. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-18gnu: hdf4: Really fix non-x86 architectures.Andreas Enge
This is a follow-up to commit 60da9fb1100787c49ed4910eacf50e83c6462dcc. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/maths.scm (hdf4)[source]: Add patch.
2016-10-18gnu: enlightenment: Update to 0.21.3.Efraim Flashner
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.3.
2016-10-17grafts: Remove unnecessary 'umask' call.Ludovic Courtès
This is a followup to d72267863382041b84a9712eea354882be72ef55. * guix/build/graft.scm (rewrite-directory): Remove 'umask' call.
2016-10-17grafts: Apply the right grafts in the presence of multiple outputs.Ludovic Courtès
Fixes <http://bugs.gnu.org/24712>. * guix/grafts.scm (cumulative-grafts): Add grafts for all the outputs of DRV. * tests/grafts.scm ("graft-derivation, replaced derivation has multiple outputs"): New test.
2016-10-17guix build: Add '--with-graft'.Ludovic Courtès
* guix/scripts/build.scm (transform-package-inputs/graft): New procedure. (%transformations): Add 'with-graft'. (%transformation-options): Likewise. (show-transformation-options-help): Document it. * tests/scripts-build.scm ("options->transformation, with-graft"): New test. * doc/guix.texi (Package Transformation Options): Document it.
2016-10-17guix build: Factorize transformation option parsing.Ludovic Courtès
* guix/scripts/build.scm (%transformation-options): Introduce 'parser' procedure and use it.
2016-10-17guix build: Extract '--with-input' replacement spec parsing.Ludovic Courtès
* guix/scripts/build.scm (evaluate-replacement-specs): New procedure. (transform-package-inputs)[not-equal]: Remove. [replacements]: Define in terms of 'evaluate-replacement-specs'.
2016-10-18gnu: tor: Update to 0.2.8.9.Efraim Flashner
* gnu/packages/tor.scm (tor): Update to 0.2.8.9.
2016-10-18gnu: vapoursynth: Update to 34.Efraim Flashner
* gnu/packages/video.scm (vapoursynth): Update to 34.
2016-10-18gnu: zimg: Update to 2.3.Efraim Flashner
* gnu/packages/image.scm (zimg): Update to 2.3.
2016-10-17gnu: jasper: Update to 1.900.5.Efraim Flashner
* gnu/packages/image.scm (jasper): Update to 1.900.5. [source]: Remove patches. [native-inputs]: Remove unzip. * gnu/packages/patches/jasper-CVE-2007-2721.patch, gnu/packages/patches/jasper-CVE-2008-3520.patch, gnu/packages/patches/jasper-CVE-2008-3522.patch, gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch, gnu/packages/patches/jasper-CVE-2014-8137.patch, gnu/packages/patches/jasper-CVE-2014-8138.patch, gnu/packages/patches/jasper-CVE-2014-8157.patch, gnu/packages/patches/jasper-CVE-2014-8158.patch, gnu/packages/patches/jasper-CVE-2014-9029.patch, gnu/packages/patches/jasper-CVE-2016-1577.patch, gnu/packages/patches/jasper-CVE-2016-1867.patch, gnu/packages/patches/jasper-CVE-2016-2089.patch, gnu/packages/patches/jasper-CVE-2016-2116.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2016-10-17gnu: diffoscope: Update to 61.Leo Famulari
* gnu/packages/package-management.scm (diffoscope): Update to 61.
2016-10-17gnu: openssh: Enable kerberos features.John Darrington
* gnu/packages/ssh.scm (openssh) [arguments]: Add flag --with-kerberos5. [inputs]: Add mit-krb5.
2016-10-17gnu: linux-libre: Update to 4.8.2.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash) (linux-libre): Update to 4.8.2.
2016-10-17gnu: linux-libre@4.4: Update to 4.4.25.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.25.
2016-10-17gnu: Add xpad.Rene Saavedra
* gnu/packages/gnome.scm (xpad): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-10-17gnu: Add rcas-web.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (rcas-web): New variable.
2016-10-17gnu: Add r-rcas.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rcas): New variable.
2016-10-17gnu: irrlicht: Update to 1.8.4.Ricardo Wurmus
* gnu/packages/games.scm (irrlicht): Update to 1.8.4. [arguments]: Delete phase "apply-patch/mesa-10-fix". [native-inputs]: Remove "patch/mesa-10-fix". * gnu/packages/patches/irrlicht-mesa-10.patch: Delete file. * gnu/local.mk (dist_path_DATA): Remove irrlicht patch.
2016-10-17gnu: extremetuxracer: Update to 0.7.3.Ricardo Wurmus
* gnu/packages/games.scm (extremetuxracer): Update to 0.7.3. [inputs]: Remove freetype, mesa, libice, libpng, sdl, sdl-mixer, sdl-image, libsm, libunwind, libx11, libext, libxi, libxmu, libxt, tcl, zlib; add sfml. [arguments]: Remove field.
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