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2018-03-30gnu: mash: Update to 2.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (mash): Update to 2.0.
2018-03-30gnu: mafft: Update to 7.394.Ben Woodcroft
* gnu/packages/bioinformatics.scm (mafft): Update to 7.394.
2018-03-30gnu: diamond: Update to 0.9.19.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.19.
2018-03-29gnu: pybitmessage: Update to 0.6.3.2 [security fixes].Ricardo Wurmus
* gnu/packages/messaging.scm (pybitmessage): Update to 0.6.3.2. [source]: Fetch from git.
2018-03-29gnu: hydrogen: Update to 1.0.0-beta1.Ricardo Wurmus
* gnu/packages/music.scm (hydrogen): Update to 1.0.0-beta1. [source]: Fetch from git. [arguments]: Add phase to fix installation directory for pixmaps. [inputs]: Remove qt-4; add qtbase and qtxmlpatterns.
2018-03-29gnu: mod-host: Update to 0.10.6-3.1726ad06b.Ricardo Wurmus
* gnu/packages/music.scm (mod-host): Update to 0.10.6-3.1726ad06b.
2018-03-29gnu: drumkv1: Update to 0.9.0.Ricardo Wurmus
* gnu/packages/music.scm (drumkv1): Update to 0.9.0.
2018-03-29gnu: samplv1: Update to 0.9.0.Ricardo Wurmus
* gnu/packages/music.scm (samplv1): Update to 0.9.0.
2018-03-29gnu: padthv1: Update to 0.9.0.Ricardo Wurmus
* gnu/packages/music.scm (padthv1): Update to 0.9.0.
2018-03-29gnu: synthv1: Update to 0.9.0.Ricardo Wurmus
* gnu/packages/music.scm (synthv1): Update to 0.9.0.
2018-03-29gnu: qtractor: Update to 0.9.0.Ricardo Wurmus
* gnu/packages/music.scm (qtractor): Update to 0.9.0.
2018-03-29gnu: awesome: Remove obsolete snippet.Marius Bakke
* gnu/packages/wm.scm (awesome)[source](snippet): Remove.
2018-03-29gnu: xcb-util-xrm: Update to 1.3.Marius Bakke
* gnu/packages/xdisorg.scm (xcb-util-xrm): Update to 1.3.
2018-03-29gnu: mbedtls-apache: Update to 2.7.2.Marius Bakke
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.2. [source](snippet): Remove.
2018-03-29gnu: Add botan.Leo Famulari
* gnu/packages/crypto.scm (botan): New variable.
2018-03-29gnu: Add fpm2.Tonton
* gnu/packages/password-utils.scm (fpm2): New variable. Signed-off-by: Tonton <tonton@riseup.net> Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-29gnu: Add screen-message.Tonton
* gnu/packages/xdisorg.scm (screen-message): New variable. Signed-off-by: Tonton <tonton@riseup.net> Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-03-29gnu: r-lme4: Update to 1.1-16.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-16.
2018-03-29gnu: r-curl: Update to 3.2.Tobias Geerinckx-Rice
* gnu/packages/web.scm (r-curl): Update to 3.2.
2018-03-29gnu: bspwm: Update to 0.9.4.Tobias Geerinckx-Rice
* gnu/packages/wm.scm (bspwm): Update to 0.9.4.
2018-03-29gnu: rss-bridge: Update to 2018-03-11.Tobias Geerinckx-Rice
* gnu/packages/web.scm (rss-bridge): Update to 2018-03-11.
2018-03-29gnu: r-mutationalpatterns: Update to 1.4.3.Roel Janssen
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3; [propagated-inputs]: Remove r-gridextra.
2018-03-29gnu: kaiju: Update to 1.6.2.Roel Janssen
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2; [inputs]: Add zlib.
2018-03-29gnu: Add duperemove.Vasile Dumitrascu
* gnu/packages/disk.scm (duperemove): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-29gnu: Add python-debug.Ludovic Courtès
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>. * gnu/packages/python.scm (python-debug): New variable.
2018-03-29gnu: nano: Update to 2.9.5.Efraim Flashner
* gnu/packages/nano.scm (nano): Update to 2.9.5.
2018-03-29gnu: Add r-idr.Roel Janssen
* gnu/packages/cran.scm (r-idr): New variable.
2018-03-29gnu: Add r-amap.Roel Janssen
* gnu/packages/cran.scm (r-amap): New variable.
2018-03-29gnu: Add r-venndiagram.Roel Janssen
* gnu/packages/cran.scm (r-venndiagram): New variable.
2018-03-29gnu: Add r-pastecs.Roel Janssen
* gnu/packages/cran.scm (r-pastecs): New variable.
2018-03-29gnu: libusb4java: Adjust for building with libusb 1.0.22.Ricardo Wurmus
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove "-Werror" flag.
2018-03-29gnu: libusb-for-axoloti: Update patch.Ricardo Wurmus
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb 1.0.22.
2018-03-29gnu: Refactor boot-service-type and activation-service-type.Chris Marusich
* gnu/services.scm (boot-service-type) <compose>: Use the "identity" procedure instead of the "append" procedure because it more accurately reflects the intent, which is to simply return the single list of extensions to which fold-services applies the "compose" procedure. (activation-service-type) <compose>: Likewise.
2018-03-29doc: Improve <service-type> documentation.Chris Marusich
* doc/guix.texi (Service Reference): Correct and clarify some statements regarding the "compose" and "extend" procedures of <service-type>.
2018-03-29guix-install.sh: Explicitly set root's home directory.Chris Marusich
* etc/guix-install.sh (ROOT_HOME): New variable. (sys_create_store, sys_enable_guix_daemon, sys_authorize_build_farms): Use ROOT_HOME instead of ~root or the HOME environment variable. * doc/guix.texi (Binary Installation): Instead of assuming that ~ and $HOME refer to root's directory simply because commands are being run as root, explicilty refer to it via ~root. Fixes: <https://bugs.gnu.org/30728>
2018-03-28gnu: node: Update to 9.10.0.Jelle Licht
* gnu/packages/node.scm (node): Update to 9.10.0.
2018-03-28gnu: http-parser: Update to 2.8.0.Jelle Licht
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
2018-03-28gnu: xf86-video-ati: Update to 18.0.1.Marius Bakke
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
2018-03-28gnu: xf86-input-libinput: Update to 0.27.0.Marius Bakke
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0.
2018-03-28gnu: ntp: Update to 4.2.8p11 [security-fixes].Leo Famulari
Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}. * gnu/packages/ntp.scm (ntp): Update to 4.2.8p11.
2018-03-28gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739].Leo Famulari
* gnu/packages/tls.scm (openssl)[replacement]: New field. (openssl-1.0.2o): New variable.
2018-03-28gnu: Add r-parsedate.Konrad Hinsen
* gnu/packages/cran.scm (r-parsedate): New variable. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28gnu: mu: Fix tests failures triggered by DST.Maxim Cournoyer
* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28gnu: Add tcalc.Nadya Voronova
* gnu/packages/maths.scm (tcalc): New variables. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28build: Build (guix ci) and (guix scripts weather) when HAVE_GUILE_JSON.Ludovic Courtès
* Makefile.am (MODULES): Move guix/ci.scm and guix/scripts/weather.scm to the HAVE_GUILE_JSON-guarded block.
2018-03-28weather: Report continuous integration stats.Ludovic Courtès
* guix/scripts/weather.scm (histogram, throughput, queued-subset): New procedures. (report-server-coverage): Report CI information. * doc/guix.texi (Invoking guix weather): Document it.
2018-03-28Add (guix ci).Ludovic Courtès
* guix/ci.scm: New file. * Makefile.am (MODULES): Add it.
2018-03-28gnu: culmus: Rename to font-culmus.Arun Isaac
* gnu/packages/fonts.scm (culmus): Rename to... (font-culmus): ...this. Re-indent.
2018-03-28gnu: culmus: Switch to font-build-system.Arun Isaac
* gnu/packages/fonts.scm (culmus): Switch to font-build-system. [arguments]: Replace system* with invoke.
2018-03-28gnu: font-linuxlibertine: Switch to font-build-system.Arun Isaac
* gnu/packages/fonts.scm (font-linuxlibertine): Switch to font-build-system. [arguments]: Replace system* with invoke.
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