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2017-11-13gnu: Move web packages from python to python-web.Ludovic Courtès
This is in part to address <https://bugs.gnu.org/27284>. * gnu/packages/python.scm (python-httplib2, python2-httplib2) (python-sockjs-tornado, python2-sockjs-tornado) (python-flask-babel, python2-flask-babel) (python-html5lib, python2-html5lib) (python-html5lib-0.9, python2-html5lib-0.9) (python-html5-parser, python2-html5-parser) (python-webencodings, python2-webencodings) (python-openid, python2-openid, python-cssutils, python2-cssutils) (python-cssselect, python2-cssutils) (python-openid-cla, python2-openid-cla) (python-openid-teams, python2-openid-teams) (python-tornado, python2-tornado) (python-tornado-http-auth, python-terminado, python2-terminado) (python-webob, python2-webob, python-zope-event, python2-zope-event) (python-zope-interface, python2-zope-interface) (python-zope-exceptions, python2-zope-exceptions) (python-zope-testing, python2-zope-testing) (python-zope-testrunner, python2-zope-testrunner) (python-zope-i18nmessageid, python2-zope-i18nmessageid) (python-zope-schema, python2-zope-schema) (python-zope-configuration, python2-zope-configuration) (python-zope-proxy, python2-zope-proxy) (python-zope-location, python2-zope-location) (python-zope-security, python2-zope-security) (python-zope-component, python2-zope-component) (python-ndg-httpsclient, python2-ndg-httpsclient) (python-websocket-client, python2-websocket-client) (python-requests-toolbelt, python2-requests-toolbelt) (python-rauth, python2-rauth, python-urllib3, python2-urllib3) (awscli, python-wsgiproxy2, python2-wsgiproxy2) (python-pastedeploy, python2-pastedeploy) (python-webtest, python2-webtest, python-flask, python2-flask) (python-flast-wtf, python2-flask-wtf) (python-flask-multistatic, python2-flask-multistatic) (python-cookies, python2-cookies) (python-responses, python2-responses) (python-geventhttpclient, python2-geventhttpclient) (python-requests-oauthlib, python2-requests-oauthlib) (python-url, python2-url, python-cachecontrol, python2-cachecontrol) (python-betamax, python2-betamax) (python-betamax-matchers, python2-betamax-matchers) (python-s3transfer, python2-s3transfer) (python-flask-restful, python-flask-basicauth) (python-flask-sqlalchemy, python-flask-restplus) (python-flask-restful-swagger, python-htmlmin, python2-htmlmin) (python-flask-htmlmin, python2-flask-htmlmin) (python-flask-login, python2-flask-login) (python-oauth2client, python-flask-oidc) (python-webassets, python-cssmin, python2-cssmin) (python-elasticsearch, python2-elasticsearch) (python-flask-script, python2-flask-script) (python-flask-migrate, python2-flask-migrate) (python-genshi, python2-genshi) (python-flask-principal, python2-flask-principal) (python-flask-httpauth, python2-flask-httpauth) (python-uritemplate, python2-uritemplate): Move to... * gnu/packages/python-web.scm: ... here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/admin.scm, gnu/packages/backup.scm, gnu/packages/dav.scm, gnu/packages/django.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/logging.scm, gnu/packages/mail.scm, gnu/packages/music.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/rdf.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm: Adjust accordingly.
2017-11-14gnu: diamond: Update to 0.9.13.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.13.
2017-11-13gnu: Move test packages from perl to perl-check.Ricardo Wurmus
* gnu/packages/perl.scm (perl-test2-bundle-extended, perl-test2-plugin-nowarnings, perl-test-base, perl-test-class, perl-test-class-most, perl-test-cleannamespaces, perl-test-command, perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep, perl-test-differences, perl-test-directory, perl-test-eol, perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist, perl-test-files, perl-test-harness, perl-test-leaktrace, perl-test-longstring, perl-test-manifest, perl-test-memory-cycle, perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs, perl-test-notabs, perl-test-nowarnings, perl-test-number-delta, perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires, perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint, perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn, perl-test-warnings, perl-test-without-module, perl-test-writevariants, perl-test-yaml, perl-test-trailingspace): Move variables to ... * gnu/packages/perl-check.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/admin.scm, gnu/packages/bioinformatics.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/glib.scm, gnu/packages/gnupg.scm, gnu/packages/image-viewers.scm, gnu/packages/language.scm, gnu/packages/networking.scm, gnu/packages/package-management.scm, gnu/packages/perl.scm, gnu/packages/terminals.scm, gnu/packages/tex.scm, gnu/packages/version-control.scm, gnu/packages/web.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm: Use perl-check module.
2017-11-13gnu: ghc-tls: Move to (gnu packages tls).Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-tls): Move from here... * gnu/packages/tls.scm (ghc-tls): ...to here. * gnu/packages/haskell-web.scm: Use (gnu packages tls).
2017-11-13gnu: Move crypto packages from haskell to haskell-crypto.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-asn1-types, ghc-asn1-encoding, ghc-asn1-parse, ghc-crypto-api, ghc-crypto-api-tests, ghc-cryptohash, ghc-cryptohash-md5, ghc-cryptohash-sha1, ghc-cryptonite, ghc-digest, ghc-entropy, ghc-pem, ghc-puremd5, ghc-sha, ghc-x509, ghc-x509-store, ghc-x509-validation, ghc-x509-system): Move variables to ... * gnu/packages/haskell-crypto.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/haskell.scm, gnu/packages/haskell-web.scm, gnu/packages/version-control.scm: Include haskell-crypto module.
2017-11-13gnu: Move web packages from haskell to haskell-web.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-tagsoup, ghc-cookie, ghc-http-types, ghc-http, ghc-http-client, ghc-http-client-tls, ghc-http-date, ghc-http2, ghc-http-conduit, ghc-wai, ghc-wai-logger, ghc-wai-extra, ghc-wai-conduit, ghc-warp, ghc-warp-tls, ghc-xss-sanitize, ghc-css-text, ghc-mime-types, ghc-html, ghc-xhtml, ghc-blaze-html, ghc-aeson, ghc-aeson-pretty, ghc-aeson-qq, ghc-multipart): Move variables to ... * gnu/packages/haskell-web.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/haskell.scm, gnu/packages/idris.scm, gnu/packages/version-control.scm, gnu/packages/wm.scm: Include haskell-web module.
2017-11-13gnu: Move testing packages from haskell to haskell-check.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-clock-bootstrap, ghc-tasty-ant-xml, ghc-tasty-smallcheck, ghc-tasty-quickcheck, ghc-tasty-golden, ghc-tasty, ghc-tasty-hunit, ghc-tasty-kat, ghc-tasty-th, ghc-tasty-rerun, ghc-quickcheck-instances, ghc-quickcheck-unicode, ghc-quickcheck-io, ghc-quickcheck, ghc-test-framework, ghc-test-framework-hunit, ghc-test-framework-quickcheck2, ghc-test-framework-th, ghc-hunit, hspec-discover, ghc-hspec-core, ghc-hspec-meta, ghc-hspec, ghc-hspec-contrib, ghc-hspec-expectations): Move variables to ... * gnu/packages/haskell-check.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/haskell.scm, gnu/packages/idris.scm, gnu/packages/version-control.scm, gnu/packages/wm.scm: Include haskell-check module.
2017-11-13gnu: cd-hit: Update source tarball hash.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cd-hit)[source]: Update hash.
2017-11-13Revert "gnu: totem: Enable parallel build."Kei Kebreau
This reverts commit e5f748a6c0c774265f52c7246ee7b80bec6d3522.
2017-11-13services: guix: Remove dependency on 'lsof'.Ludovic Courtès
This is a followup to b8f59cdc20e9d83ce63523ef917e95fcee07f134: 'list-runtime-roots' no longer depends on 'lsof'. * gnu/services/base.scm (<guix-configuration>)[lsof]: Remove. (guix-shepherd-service): Adjust accordingly. * doc/guix.texi (Base Services): Adjust accordingly. * gnu/system.scm (%base-packages): Remove LSOF.
2017-11-13gnu: guix: Update snapshot.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to ff23b47.
2017-11-13tests: 'guix-gc.sh' passes even when 'out' or 'drv' are defined as env vars.Ludovic Courtès
This fixes a test failure exhibited by fb17a89912c2a3738dae716e30481c11e1c6f0ac whereby assignments to 'out' in guix-gc.sh would go to the 'out' environment variable, when it exists, which in turn prevents garbage collection of $out. * tests/guix-gc.sh: Add 'unset' invocations.
2017-11-13gnu: ibus: Update to 1.5.17.Efraim Flashner
* gnu/packages/ibus.scm (ibus): Update to 1.5.17.
2017-11-13gnu: ibus: Enable wayland support.Efraim Flashner
* gnu/packages/ibus.scm (ibus)[arguments]: Add configure flag to enable wayland support. [inputs]: Add wayland.
2017-11-12gnu: libsoup: Update to 2.60.2.Kei Kebreau
* gnu/packages/gnome.scm (libsoup): Update to 2.60.2.
2017-11-12list-runtime-roots: Ignore PIDs we cannot access.Ludovic Courtès
This allows running as non-root. Fixes a regression introduced in b8f59cdc20e9d83ce63523ef917e95fcee07f134. * nix/scripts/list-runtime-roots.in (referenced-files): Handle EACCES in addition to ENOENT.
2017-11-12download: Use HTTPS for the first ImageMagick mirror.Leo Famulari
* guix/download.scm (%mirrors)[imagemagick]: Use HTTPS for <sunsite.icm.edu.pl>.
2017-11-12download: Try FTP servers last.Leo Famulari
* guix/download.scm (%mirrors)[savannah, kernel.org, apache, xorg, imagemagick]: Re-arrange so that FTP is last.
2017-11-12gnu: imagemagick: Update to 6.9.9-23.Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-23.
2017-11-12list-runtime-roots: Canonicalize store items.Ludovic Courtès
Looking at 'addAdditionalRoots' in libstore/gc.cc, it looks like it should always have been this way. In practice it probably doesn't make much of a difference. * nix/scripts/list-runtime-roots.in (canonicalize-store-item): New procedure. <top level>: Use it.
2017-11-12list-runtime-roots: Do not use 'lsof'.Ludovic Courtès
This makes things a bit faster (0.8s instead of 1.4s on my laptop). * nix/scripts/list-runtime-roots.in (lsof-roots): Remove. (proc-fd-roots): Return the empty list when 'scandir' returns #f. (referenced-files): New procedure. Use it at the top level.
2017-11-12doc: Better explain GC roots.Ludovic Courtès
Fixes <https://bugs.gnu.org/24194>. Reported by J. Eppler <j.eppler@openmailbox.org>. * doc/guix.texi (Invoking guix-daemon): Add index entries for GC roots. Add xref to "Invoking guix gc". (Invoking guix gc): Add the string "GC roots"; mention /var/guix/gcroots. (Additional Build Options): Add index entries. Better explain --root. (Invoking guix environment): Add xref to "Invoking guix gc".
2017-11-12gnu: Remove unrar.Leo Famulari
This package is abandoned upstream and contains serious bugs: http://seclists.org/oss-sec/2017/q3/329 https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14120 https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14121 https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14122 * gnu/packages/compression.scm (unrar): Remove variable.
2017-11-12gnu: linux-libre: Change URL to HTTPS.Rutger Helling
* gnu/packages/linux.scm (linux-libre): Change URL to HTTPS. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-12gnu: mupdf: Unbundle mujs.Efraim Flashner
* gnu/packages/pdf.scm (mupdf)[source]: Remove bundled mujs. [inputs]: Add mujs.
2017-11-12gnu: Add mujs.Efraim Flashner
* gnu/packages/javascript.scm (mujs): New variable.
2017-11-12gnu: mupdf: Use https.Efraim Flashner
* gnu/packages/pdf.scm (mupdf)[source]: Use https. [home-page]: Same.
2017-11-12gnu: pdf.scm: Arrange modules alphabetically.Efraim Flashner
* gnu/packages/pdf.scm: Arrange modules alphabetically.
2017-11-12gnu: lash: Don't build static libraries.Efraim Flashner
* gnu/packages/audio.scm (lash)[arguments]: Add configure-flag to disable static libraries.
2017-11-12gnu: lash: Don't build lashd.Efraim Flashner
This fixes bug#28174. * gnu/packages/audio.scm (lash)[arguments]: Add phase to skip building lashd.
2017-11-12gnu: glib-networking: Update to 2.54.1.Kei Kebreau
* gnu/packages/gnome.scm (glib-networking): Update to 2.54.1.
2017-11-12gnu: ffmpeg: Reduce the size of the closure.Efraim Flashner
* gnu/packages/video.scm (ffmpeg)[arguments]: Add new configure flags to disable the html man pages and the static libraries.
2017-11-12gnu: mupdf: Use Texinfo for the description.Efraim Flashner
* gnu/packages/pdf.scm (mupdf)[description]: Use Texinfo to mark up the description.
2017-11-11gnu: w3m: Find an editor in the environment.Leo Famulari
* gnu/packages/w3m.scm (w3m)[arguments]: Pass an empty value for --with-editor in #:configure-flags. [source]: Use git-file-name.
2017-11-11gnu: mupdf: Actually fix CVE-2017-15587.Leo Famulari
The original fix could be removed by an optimizing compiler. * gnu/packages/patches/mupdf-CVE-2017-15587.patch: Revise patch.
2017-11-12gnu: libusb-compat: Use the same home page as libusb.Tobias Geerinckx-Rice
* gnu/packages/libusb.scm (libusb-compat)[home-page]: Update.
2017-11-12gnu: fcgi: Fix typo in description.Tobias Geerinckx-Rice
* gnu/packages/web.scm (fcgi)[description]: Fix typo.
2017-11-12gnu: fcgi: Use archived home page fork.Tobias Geerinckx-Rice
* gnu/packages/web.scm (fcgi)[home-page]: Use archived version.
2017-11-12gnu: lynx: Use new home page.Tobias Geerinckx-Rice
* gnu/packages/web-browsers.scm (lynx)[home-page]: Update.
2017-11-12gnu: perl-mime-types: Update to 2.14.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-mime-types): Update to 2.14.
2017-11-11gnu: mailutils: Update to 3.4.Ludovic Courtès
* gnu/packages/mail.scm (mailutils): Update to 3.4.
2017-11-11gnu: emacs-emms: Update to 4.4.Ludovic Courtès
* gnu/packages/emacs.scm (emms): Update to 4.4.
2017-11-11gnu: nyacc: Update to 0.82.4.Jan Nieuwenhuizen
* gnu/packages/mes.scm (nyacc): Update to 0.82.4.
2017-11-11git: Check whether 'clone-init-options' is defined.Ludovic Courtès
This is a followup to 195f0d05c3f64e17e84b2683a7045a14ec578d61. * guix/git.scm (clone*): Check whether 'clone-init-options' is defined before using it.
2017-11-11gnu: nvi: Build with support for Unicode text.Leo Famulari
* gnu/packages/nvi.scm (nvi)[arguments]: Pass '--enable-widechar' to #:configure-flags.
2017-11-11tests: Adjust to new unbound-variable error message.Ludovic Courtès
This is a followup to dc856223f5eab57d8a4881782ec0f50abd12afa3. * tests/guix-package.sh: Adjust unbound-variable message regexp.
2017-11-11tests: Refer to "time@1.8".Ludovic Courtès
This is a followup to dd00e0919fcecd895ff4e5a646cf068f46ff8d12. * tests/guix-build.sh: Refer to "time@1.8".
2017-11-11download: Work around more bogus HTTP handling in Guile 2.2 <= 2.2.2.Ludovic Courtès
Reported by Mark H Weaver <mhw@netris.org> at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00190.html>. * guix/build/download.scm (guile-2.2) [write-request-line]: Backport Guile commit 6ad28ae3bc6a6d9e95ab7d70510d12c97673a143.
2017-11-11gnu: lvm2: Update to 2.02.176.Marius Bakke
* gnu/packages/linux.scm (lvm2): Update to 2.02.176.
2017-11-11gnu: libstaroffice: Update to 0.0.5.Marius Bakke
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.5.
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