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* gnu/packages/cran.scm (r-getoptlong): New variable.
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* gnu/packages/cran.scm (r-dendextend): New variable.
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* gnu/packages/cran.scm (r-compare): New variable.
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* gnu/packages/image.scm (r-png): New variable.
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* gnu/packages/cran.scm (r-powerlaw): New variable.
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* gnu/packages/cran.scm (r-circlize): New variable.
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* gnu/packages/cran.scm (r-globaloptions): New variable.
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* gnu/packages/cran.scm (r-shape): New variable.
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* gnu/packages/cran.scm (r-calibrate): New variable.
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* gnu/packages/cran.scm (r-auc): New variable.
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* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
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* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
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* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
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* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for
non-Intel targets.
[arguments]: On non-Intel systems, add phase to disable non-Intel
architecture warning and remove incompatible binaries.
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* gnu/packages/games.scm (mgba): New public variable.
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* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0.
[arguments]: Add guile-git and guile-bytestructures to the load path.
[inputs]: Remove git, add guile-git and guile-bytestructures.
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* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/ebook.scm (fbreader): New variable.
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* gnu/packages/ebook.scm (liblinebreak): New variable.
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* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
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* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
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* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
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* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
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* gnu/packages/image.scm (gpick): New variable.
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* gnu/packages/version-control.scm (fossil): Update to 2.2.
[source]: Add uri for older versions.
[arguments]: Enable previously disabled test.
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* gnu/packages/connman.scm (connman): Update to 1.35.
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* gnu/packages/games.scm (ltris): New variable.
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* gnu/packages/haskell.scm (ghc-gitrev): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-monadplus): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-fail): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-edisoncore): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-edisonapi): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-murmur-hash): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-data-hash): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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This fixes CVE-2017-10791, CVE-2017-10792.
* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
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* gnu/packages/haskell.scm (ghc-equivalence): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-boxes): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-edit-distance): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-stmonadtrans): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (ghc-strict): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/haskell.scm (cpphs): Update to 1.20.8.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/fonts.scm (font-google-noto)[build-system]: Use
font-build-system.
[source]: Use url-fetch/zipbomb.
[arguments]: Remove it.
[native-inputs]: Remove it.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/bioinformatics.scm (r-mzr)[inputs]: Add boost.
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* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
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This special version of Git is only used within the build process of
cgit. We don't need to build it otherwise, so the package is removed
with this commit.
* gnu/packages/version-control.scm (cgit)[inputs]: Replace the git@2.10
package with an origin reference of the source code.
(git@2.10): Remove variable.
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Memcached changes to the memcached user from root before writing the PID
file. This means that it must be able to write the PID file as the memcached
user.
To make this work, create the /var/run/memcached directory when the service
starts, make it owned by memcached, and change memcached to write the PID file
to /var/run/memcached/pid.
This wasn't picked up by the system test as the "service running" part was too
permissive, and only failed on an error. Instead, test the response from
calling start-service and check that the PID is a number.
* gnu/services/databases.scm (memcached-activation): New variable.
(memcached-shepherd-service): Change PID file location.
(memcached-service-type): Extend the activation-service-type.
* gnu/tests/databases.scm (run-memcached-test)[test]: Change the "service
running" test to check the response from the shepherd.
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* gnu/packages/music.scm (dssi): New variable.
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* gnu/packages/emacs.scm (emacs-highlight-symbol): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/shells.scm (fish-guix)[source]: Adjust the download URL.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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