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2020-08-18gnu: Add libxmlb.Raghav Gururajan
* gnu/packages/xml.scm (libxmlb): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add portablexdr.Raghav Gururajan
* gnu/packages/gnome.scm (portablexdr): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add malcontent.Raghav Gururajan
* gnu/packages/freedesktop.scm (malcontent): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add libglib-testing.Raghav Gururajan
* gnu/packages/freedesktop.scm (libglib-testing): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add tepl.Raghav Gururajan
* gnu/packages/gnome.scm (tepl): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: Add krb5-auth-dialog.Raghav Gururajan
* gnu/packages/gnome.scm (krb5-auth-dialog): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-08-18gnu: mpfrcx: Update to 0.6.Andreas Enge
* gnu/packages/algebra.scm (mpfrcx): Update to 0.6.
2020-08-18gnu: txr: Update to 242.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr): Update to 242.
2020-08-18gnu: guile2.2-gi: Fix build.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile2.2-gi)[native-inputs]: Remove. [inputs]: Replace "guile" with "guile-2.2".
2020-08-18gnu: guile-gi: Install extension to sub-directory, use glib-or-gtk build system.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-gi)[build-system]: Use glib-or-gtk-build-system. [arguments]: Install the extension to the "extensions" sub-directory.
2020-08-18gnu: bowtie1: Add missing Python input.Ricardo Wurmus
Reported-by: Marcel Schilling <marcel.schilling@mdc-berlin.de> * gnu/packages/bioinformatics.scm (bowtie1)[inputs]: Add python-wrapper.
2020-08-18gnu: Add r-nabor.Ricardo Wurmus
* gnu/packages/cran.scm (r-nabor): New variable.
2020-08-18gnu: ghcid: Update to 0.8.7.Tobias Geerinckx-Rice
* gnu/packages/haskell-apps.scm (ghcid): Update to 0.8.7.
2020-08-18gnu: python-igraph: Update to 0.8.2.Tobias Geerinckx-Rice
* gnu/packages/graph.scm (python-igraph): Update to 0.8.2.
2020-08-18gnu: igraph: Update to 0.8.2.Tobias Geerinckx-Rice
* gnu/packages/graph.scm (igraph): Update to 0.8.2.
2020-08-18gnu: cfitsio: Update to 3.49.Tobias Geerinckx-Rice
* gnu/packages/astronomy.scm (cfitsio): Update to 3.49. [source]: Hard-code NAME.
2020-08-18gnu: jc: Update to 1.13.4.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (jc): Update to 1.13.4.
2020-08-18gnu: blender: Update to 2.83.4.Tobias Geerinckx-Rice
* gnu/packages/graphics.scm (blender): Update to 2.83.4.
2020-08-17doc: Fix a typo in the AutoSSH service documentation.Maxim Cournoyer
* doc/guix.texi (Networking Services)[autossh-configuration]: Fix typo.
2020-08-17gnu: rclone: Update to 1.52.3.Nicolas Goaziou
* gnu/packages/sync.scm (rclone): Update to 1.52.3.
2020-08-17gnu: git-annex: Create fake static output.Timothy Sample
This is a work-around for a problem introduced by commit 718dc7d4a5e5d26cac80c79d78535677e0379dc8. * gnu/packages/haskell-apps.scm (git-annex)[arguments]: Add a phase to generate the "static" output.
2020-08-17gnu: fet: Update to 5.46.0.Nicolas Goaziou
* gnu/packages/education.scm (fet): Update to 5.46.0.
2020-08-17gnu: mame: Update to 0.223.Nicolas Goaziou
* gnu/packages/emulators.scm (mame): Update to 0.223.
2020-08-17gnu: emacs-clojure-mode: Update to 5.12.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.12.0. [native-inputs]: Add emacs-paredit.
2020-08-17gnu: emacs-ediprolog: Update to 2.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-ediprolog): Update to 2.1.
2020-08-17gnu: emacs-gnuplot: Switch to Emacs build system.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-gnuplot)[source]: Update URL. [native-inputs]: Remove. [arguments]: Remove. [home-page]: Update URL. [description]: Improve typography.
2020-08-17gnu: vim: Update to 8.2.1471.Efraim Flashner
* gnu/packages/vim.scm (vim): Update to 8.2.1471. [arguments]: Adjust custom 'patch-absolute-paths, 'skip-failing-tests phases for changes in the sources.
2020-08-17gnu: python-rpy2: Update home-page.Efraim Flashner
* gnu/packages/statistics.scm (python-rpy2)[home-page]: Update to new home-page.
2020-08-17gnu: Add emacs-fancy-battery.Pierre Langlois
* gnu/packages/emacs-xyz.scm (emacs-fancy-battery): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-08-17utils: Add version-major+minor+point.Efraim Flashner
* guix/utils.scm (version-major+minor+point): New procedure.
2020-08-17gnu: Add python-hypercorn.Vinicius Monego
* gnu/packages/python-web.scm (python-hypercorn): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-08-17gnu: Add python-priority.Vinicius Monego
* gnu/packages/python-web.scm (python-priority): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-08-17gnu: Add python-wsproto.Vinicius Monego
* gnu/packages/python-web.scm (python-wsproto): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-08-17gnu: Add python-h11.Vinicius Monego
* gnu/packages/python-web.scm (python-h11): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-08-16gnu: guile-ssh: Update to commit 688d7f.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/42740>. * gnu/packages/ssh.scm (guile-ssh): Update to commit 688d7f3797b5155257a6c2ee4ea5084b3d8cc244. [arguments]: Enable parallel tests. Reported-by: Ludovic Courtès <ludo@gnu.org>
2020-08-16gnu: weechat: Update to 2.9.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (weechat): Update to 2.9. [arguments]: Remove obsolete test fixes. JavaScript plugins are now disabled by default.
2020-08-16gnu: gpsd: Update to 3.21.Tobias Geerinckx-Rice
* gnu/packages/gps.scm (gpsd): Update to 3.21.
2020-08-16gnu: srain: Update to 1.1.2.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (srain): Update to 1.1.2.
2020-08-16gnu: grim: Update to 1.3.1.Tobias Geerinckx-Rice
* gnu/packages/image.scm (grim): Update to 1.3.1.
2020-08-16gnu: emacs-slime: Update to 2.26.Tobias Geerinckx-Rice
* gnu/packages/emacs-xyz.scm (emacs-slime): Update to 2.26.
2020-08-16gnu: wxwidgets: Fix MIME type loading.Kei Kebreau
* gnu/packages/wxwidgets.scm (wxwidgets)[inputs]: Add shared-mime-info. [arguments]: Update 'refer-to-inputs phase so wxwidgets looks in the correct directory for MIME type information.
2020-08-16gnu: wxmaxima: Update to 20.06.6.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 20.06.6. [arguments]: Add 'patch-doc-path phase.
2020-08-16gnu: webkitgtk: Expose all font locations to the bubblewrap sandbox.Leo Prikler
Fixes <https://issues.guix.gnu.org/41174> and <https://issues.guix.gnu.org/42618>. The webkitgtk library relied on by Epiphany and others uses bubblewrap to sandbox its process. This sandbox was only exposing fonts relative to XDG_DATA_HOME. Extend it so that it honors font locations specified via XDG_DATA_DIRS as well, which is what Guix uses. * gnu/packages/patches/webkitgtk-bind-all-fonts.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/webkit.scm (webkitgtk)[source]<patches>: Use it. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2020-08-16gnu: emacs-guix: Update to 0.5.2-58a840d067.Jan (janneke) Nieuwenhuizen
This fixes several missing autoloads (for Guile 3.0). * gnu/packages/emacs-xyz.scm (emacs-guix): Update to 0.5.2-58a840d067.
2020-08-16gnu: pigx-bsseq: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.2. [inputs]: Add r-ggrepel, bwa-meth, methyldackel, multiqc, and samblaster.
2020-08-16gnu: pigx-scrnaseq: Use statically linked Pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Use pandoc and pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
2020-08-16gnu: pigx-bsseq: Use statically linked Pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Use pandoc and pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
2020-08-16gnu: pigx-chipseq: Use statically linked Pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Use pandoc and pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
2020-08-16gnu: pigx-rnaseq: Use statically linked Pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Use pandoc and pandoc-citeproc instead of ghc-pandoc and ghc-pandoc-citeproc.
2020-08-16gnu: r-loo: Use pandoc and pandoc-citeproc instead of the libraries.Ricardo Wurmus
* gnu/packages/cran.scm (r-loo)[inputs]: Replace ghc-pandoc with pandoc, and ghc-pandoc-citeproc with pandoc-citeproc.
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