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2019-03-30gnu: Add r-xcms.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-xcms): New variable.
2019-03-30gnu: Add r-massspecwavelet.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-massspecwavelet): New variable.
2019-03-30gnu: Add r-xbseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-xbseq): New variable.
2019-03-30gnu: Add r-roar.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-roar): New variable.
2019-03-30gnu: Add r-yarn.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-yarn): New variable.
2019-03-30gnu: Add r-quantro.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-quantro): New variable.
2019-03-30gnu: Add r-downloader.Ricardo Wurmus
* gnu/packages/cran.scm (r-downloader): New variable.
2019-03-30gnu: Add r-yaqcaffy.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-yaqcaffy): New variable.
2019-03-30gnu: Add r-simpleaffy.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-simpleaffy): New variable.
2019-03-30gnu: Add r-gcrma.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gcrma): New variable.
2019-03-30gnu: Add r-yapsa.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-yapsa): New variable.
2019-03-30gnu: Add r-somaticsignatures.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
2019-03-30gnu: Add r-gtrellis.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gtrellis): New variable.
2019-03-30gnu: Add r-pmcmr.Ricardo Wurmus
* gnu/packages/cran.scm (r-pmcmr): New variable.
2019-03-30gnu: gtk+: Graft upstream fix for crashes in Emacs and IceCat.Mark H Weaver
Fixes <https://bugs.gnu.org/34454>. * gnu/packages/patches/gtk3-fix-deprecation-macro-use.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gtk.scm (gtk+/fixed): New variable. (gtk+)[replacement]: New field.
2019-03-29gnu: Add font-iosevka-slab.Tobias Geerinckx-Rice
The ’slab’ variants of Iosevka were moved to a separate archive with version 2.0.0. * gnu/packages/fonts.scm (font-iosevka-slab): New public variable.
2019-03-29gnu: font-iosevka: Update to 2.2.0.Tobias Geerinckx-Rice
* gnu/packages/fonts.scm (font-iosevka): Update to 2.2.0.
2019-03-29gnu: Add r-yamss.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-yamss): New variable.
2019-03-29gnu: Add r-ebimage.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ebimage): New variable.
2019-03-29gnu: Add r-aucell.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aucell): New variable.
2019-03-29gnu: Add r-allelicimbalance.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable.
2019-03-29gnu: Add r-annotationtools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationtools): New variable.
2019-03-29gnu: Add r-annotationfuncs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationfuncs): New variable.
2019-03-29gnu: Add r-abaenrichment.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
2019-03-29gnu: Add r-gofuncr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gofuncr): New variable.
2019-03-29gnu: Add r-abadata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abadata): New variable.
2019-03-29gnu: Add r-mapplots.Ricardo Wurmus
* gnu/packages/cran.scm (r-mapplots): New variable.
2019-03-29gnu: Add r-atacseqqc.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): New variable.
2019-03-29gnu: Add r-genomicscores.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicscores): New variable.
2019-03-29gnu: Add r-motifstack.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifstack): New variable.
2019-03-29gnu: Add r-motiv.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motiv): New variable.
2019-03-29gnu: Add r-rgadem.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rgadem): New variable.
2019-03-29gnu: Add r-preseqr.Ricardo Wurmus
* gnu/packages/cran.scm (r-preseqr): New variable.
2019-03-29gnu: Add r-bacon.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bacon): New variable.
2019-03-29gnu: php: Fix typo.Ludovic Courtès
Regression introduced in e8cfce439afed945e352ad28f73f0a5f7840f503. * gnu/packages/php.scm (php)[arguments]: Add missing 'else' branch of the 'if'. Change first argument to 'string-prefix?' to match GNU triplets as well.
2019-03-29doc: Fix invalid uses of @ref.Ludovic Courtès
* doc/guix.texi (Invoking guix pull): Use @xref instead of @ref at the beginning of sentences.
2019-03-29gnu: python-faiss: Fix building on non-Intel architectures.Efraim Flashner
* gnu/packages/graph.scm (python-faiss)[arguments]: Adjust custom 'build-swig phase to change build flags for different archictures.
2019-03-29gnu: faiss: Fix building on non-Intel architectures.Efraim Flashner
* gnu/packages/graph.scm (faiss)[source]: Add snippet to wrap Intel specific headers. [arguments]: Adjust custom 'prepare-build phase to adjust compile flags for different architectures.
2019-03-29gnu: stepmania: Fix all instances of accessing application data.Ricardo Wurmus
This is a follow-up to commit 45aba232abe50b6642abfaa06030985c7febbe07. * gnu/packages/games.scm (stepmania)[arguments]: Rename phase ensure-gtk-module-can-be-found to ensure-application-files-can-be-found and fix remaining instances of application data access.
2019-03-29gnu: Stellarium: Update to 0.19.0.Leo Famulari
* gnu/packages/astronomy.scm (stellarium): Update to 0.19.0. [arguments]: Remove obsolete 'patch-tests' phase.
2019-03-29gnu: stepmania: Fix loading of gtk module.Ricardo Wurmus
Fixes <https://bugs.gnu.org/34854>. Suggested by Nicolas Goaziou. * gnu/packages/games.scm (stepmania)[arguments]: Add phase "ensure-gtk-module-can-be-found".
2019-03-29gnu: zynaddsubfx: Update to 3.0.4.Ricardo Wurmus
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.4.
2019-03-29gnu: Add r-abseqr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abseqr): New variable.
2019-03-29gnu: Add r-flexdashboard.Ricardo Wurmus
* gnu/packages/cran.scm (r-flexdashboard): New variable.
2019-03-29gnu: r-png: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/image.scm (r-png): Move from here... * gnu/packages/cran.scm (r-png): ...to here.
2019-03-29gnu: Add r-ggcorrplot.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggcorrplot): New variable.
2019-03-29gnu: Add openclonk.Nicolas Goaziou
* gnu/packages/games.scm (openclonk): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-29gnu: r-cairo: Update to 1.5-10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-10. [inputs]: Add zlib.
2019-03-29gnu: hyperrogue: Don't use NAME in hyperrogue-data.Tobias Geerinckx-Rice
* gnu/packages/games.scm (hyperrogue)[native-inputs]: Hard code NAME in hyperrogue-data source URI.
2019-03-29gnu: quadrapassel: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/games.scm (quadrapassel)[source]: Hard-code NAME.
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