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This is a follow-up to commit 0fe1fba4af41f267c4bb2c006fb37f42422ab703.
* .gitignore: s/guix-authenticate/authenticate/
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This line was removed by accident in 0a41123f01d5d2466d6f533be3644ac8c9a2bdf9.
* gnu/local.mk (dist_patch_DATA): Add "clang-3.5-libc-search-path.patch".
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* gnu/packages/image.scm (libwebp): Update to 1.0.1.
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* gnu/packages/audio.scm (fluidsynth): Update to 2.0.2.
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* gnu/packages/python.scm (python-joblib)[home-page]: Update to current.
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* gnu/packages/python.scm (python-joblib): Update to 0.13.0.
[source](snippet): Remove.
[arguments]: Remove 'disable-failing-tests' phase. Add custom check phase.
[native-inputs]: Remove PYTHON-NOSE, PYTHON-SPHINX, PYTHON-DOCUTILS and
PYTHON-NUMPYDOC. Add PYTHON-PYTEST.
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* gnu/packages/python.scm (python-natsort): Update to 5.4.1.
[arguments]: Add #:modules. Replace 'check' phase with custom pytest
invokation.
[native-inputs]: Remove PYTHON-PYTEST-CACHE, PYTHON-PYTEST-FLAKES and
PYTHON-PYTEST-PEP8. Add PYTHON-PYTEST and PYTHON-PYTEST-MOCK.
(python2-natsort)[native-inputs]: Remove PYTHON2-ENUM34 and PYTHON2-MOCK.
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* gnu/packages/maths.scm (z3): Update to 4.8.1.
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* gnu/packages/maths.scm (z3)[source]: Change to GIT-FETCH.
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* gnu/packages/games.scm (xonotic)[arguments]: Modify the phase
'install-data so it creates a symlink to xonotic's data instead of
copying it into the xonotic package.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/audio.scm (autotalent): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/version-control.scm (git-when-merged)[license]: Change to
GPL2+.
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* gnu/packages/web.scm (r-shinyfiles): Update to 0.7.2.
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* gnu/packages/statistics.scm (r-mclust): Update to 5.4.2.
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* gnu/packages/statistics.scm (r-openssl): Update to 1.1.
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* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.4.
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* gnu/packages/cran.scm (r-ggeffects): Update to 0.7.0.
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* gnu/packages/cran.scm (r-sjstats): Update to 0.17.2.
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* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.
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* gnu/packages/cran.scm (r-recipes): Update to 0.1.4.
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* gnu/packages/cran.scm (r-dimred): Update to 0.2.2.
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* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.2.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.1.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.1.
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* gnu/packages/lisp.scm (clojure-algo-monads): New public variable.
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* gnu/packages/lisp.scm (clojure-tools-macro): New public variable.
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* gnu/packages/lisp.scm (clojure-algo-generic): New public variable.
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* gnu/packages/lisp.scm (clojure-core-match): New public variable.
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* gnu/packages/lisp.scm (clojure-instaparse): New public variable.
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* guix/build-system/clojure.scm, guix/build/clojure-build-system.scm: New
files.
* guix/build/clojure-utils.scm (@*, @@*): New macros.
(%source-dirs, %test-dirs, %compile-dir, %main-class, %omit-source?,
%aot-include, %aot-exclude, %tests?, %test-include, %test-exclude,
%clojure-regex): New variables.
(package-name->jar-names, canonicalize-relative-path, find-files*,
file-sans-extension, relative-path->clojure-lib-string, find-clojure-libs,
compiled-from?, include-list\exclude-list, eval-with-clojure, create-jar):
New procedures.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document 'clojure-build-system'.
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* guix/build/clojure-utils.scm: New file.
* gnu/packages/lisp.scm (clojure)[arguments]: Use it.
* Makefile.am (MODULES): Add it.
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* gnu/packages/lisp.scm (clojure)[arguments]: Use 'ant-build-javadoc',
'install-jars' and 'install-javadoc' in build phases.
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This avoids having to update multiple lists.
* gnu/packages/lisp.scm (clojure)[native-inputs]: Use new local variable.
[arguments]: Adjust build phases accordingly.
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This is no longer needed since clojure now makes official source releases
in github.
* gnu/packages/lisp.scm (clojure)[source]: Remove it.
[native-inputs]: Remove it in 'submodule'.
[arguments]: Adjust 'unpack-submodule-sources' phase accordingly.
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* gnu/packages/java.scm (clojure): Move from here...
* gnu/packages/lisp.scm (clojure): ...to here.
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* gnu/packages/python.scm (python-kivy): Update to 1.10.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/man.scm (help2man/latest): New variable.
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* gnu/packages/linux.scm (fuse-exfat): Update to 1.3.0.
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* gnu/packages/package-management.scm (diffoscope): Update to 105.
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Fixes a regression introduced in
52ee4479ef26826a53b9929cd00ca7738be687b1, whereby 'install' would now be
passed a <computed-file> object instead of a derivation.
* guix/scripts/system.scm (install): Call 'lower-object' on BOOTCFG.
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* gnu/packages/audio.scm (libfdk): New variable.
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* guix/scripts/system.scm (perform-action): Move non-monadic local
variables outside the 'mlet' form.
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* guix/scripts/system.scm (bootloader-installer-derivation): Rename
to...
(bootloader-installer-script): ... this. Use 'scheme-file' instead of
'gexp->file'.
(perform-action): Adjust accordingly. Move 'lower-object' call to the
point where DRVS is computed.
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* guix/scripts/system.scm (perform-action): Remove 'bootloader-package'
variable. Pass (bootloader-package bootloader) as the 2nd argument to
'bootloader-installer-derivation'. Remove BOOTLOADER-PACKAGE from DRVS
since it's redundant.
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* gnu/system/vm.scm (iso9660-image): Change 'os-drv' to 'os' and remove
call to 'operating-system-derivation'.
(system-qemu-image): Likewise.
(system-qemu-image/shared-store): Likewise.
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* gnu/system.scm (operating-system-bootcfg): Remove 'mlet*' and
'lower-object' call.
* gnu/system/vm.scm (system-disk-image)
(system-qemu-image/shared-store): Adjust accordingly.
* guix/scripts/system.scm (perform-action): Add 'lower-object' call for
BOOTCFG.
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* gnu/system.scm (operating-system-bootcfg): Remove opening parenthesis
at the beginning of the line in the docstring to placate Emacs.
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* gnu/system.scm (operating-system-boot-parameters): Turn to direct
style instead of monadic.
(operating-system-bootcfg): Adjust accordingly.
(operating-system-boot-parameters-file): Likewise.
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This is an incompatible change visible to users via the 'initrd' field
of 'operating-system'. However, assuming the user's 'initrd' value
tail-calls to 'raw-initrd' or 'base-initrd', the switch to non-monadic
style is invisible.
* gnu/system/linux-initrd.scm (expression->initrd): Use 'computed-file'
instead of 'gexp->derivation'.
(raw-initrd, base-initrd): Adjust docstring to mention non-monadic
return.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Adjust
accordingly.
* gnu/system.scm (operating-system-directory-base-entries)
(operating-system-initrd-file)
(operating-system-boot-parameters): Adjust accordingly.
* doc/guix.texi (operating-system Reference)
(Initial RAM Disk): Update.
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* gnu/system.scm (bootable-kernel-arguments): Remove 'kernel-arguments'
parameter and return only the base list of kernel arguments. Rename
'system.drv' to 'system'.
(operating-system-kernel-arguments): Adjust accordingly and remove
'system.drv' parameter.
(read-boot-parameters-file): Adjust accordingly. Remove 'if params'
since dominating code assumed PARAMS is always true.
(operating-system-boot-parameters): Remove 'system.drv' parameter; add
#:system-kernel-arguments? instead and honor it.
(operating-system-bootcfg): Adjust accordingly.
(operating-system-boot-parameters-file): Likewise.
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Remove
'os-drv' variable. Adjust call to 'operating-system-kernel-arguments'.
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