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2019-11-16gnu: openmpi: Silence UCX warnings when running tests.Ludovic Courtès
* gnu/packages/mpi.scm (%openmpi-setup): Set "UCX_LOG_LEVEL".
2019-11-16gnu: ucx: Avoid relying on /sys/class/net.Ludovic Courtès
This fixes test failures of packages that use Open MPI, whereby UCX would error out due to /sys/class/net being unavailable in the build chroot that the daemon sets up. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file. * gnu/packages/fabric-management.scm (ucx)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-16gnu: linux-libre@4.9: Update to 4.9.202.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.202. (linux-libre-4.9-pristine-source): Update hash.
2019-11-16gnu: linux-libre@4.4: Update to 4.4.202.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.202. (linux-libre-4.4-pristine-source): Update hash.
2019-11-16news: Fix another 'de' translation typo.Florian Pelz
* etc/news.scm: Fix typo.
2019-11-16news: Fix 'de' translation typo.Florian Pelz
* etc/news.scm: Fix typo.
2019-11-15time-machine: Honor the standard build options.Ludovic Courtès
* guix/scripts/time-machine.scm (show-help): Call 'show-build-options-help'. (%options): Add %STANDARD-BUILD-OPTIONS. (%default-options): New variable. (parse-args): Pass (list %default-options) to 'parse-command-line' and remove #:build-options? parameter. (guix-time-machine): Call 'set-build-options-from-command-line' and wrap 'cached-channel-instance' call in 'with-status-verbosity'. * doc/guix.texi (Invoking guix time-machine): Mention common build options.
2019-11-15time-machine: Handle 'git-error' exceptions.Ludovic Courtès
* guix/scripts/pull.scm (with-git-error-handling): Export. * guix/scripts/time-machine.scm (guix-time-machine): Wrap body in 'with-git-error-handling'.
2019-11-15news: Add entry for "guix time-machine".Konrad Hinsen
* etc/news.scm: Add entry for 'guix time-machine'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-15inferior: 'cached-channel-instance' takes an open store connection.Konrad Hinsen
* guix/inferior.scm (cached-channel-instance): Take an explicit 'store' argument. (inferior-for-channels): Wrap call to 'cached-channel-instance' in 'with-store'. * guix/time-machine.scm (guix-time-machine): Wrap call to 'cached-channel-instance' in 'with-store'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-15Add 'guix time-machine'.Konrad Hinsen
* guix/scripts/time-machine.scm: New file. * Makefile.am: (MODULES): Add it. * guix/scripts/pull.scm (channel-list): Export. * guix/inferior.scm (cached-channel-instance): New procedure. (inferior-for-channels): Use it. * doc/guix.texi (Invoking guix time-machine): New section. (Channels): Cross-reference it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-15pull: Remove unused '--verbose' option.Ludovic Courtès
This option had been ignored since commit 0d39a3b98948314e135566b9315717695a9035ea (August 2018). * guix/scripts/pull.scm (show-help, %options): Remove "--verbose". (build-and-install): Remove #:verbose?, which was unused. (guix-pull): Adjust accordingly.
2019-11-15Revert "gnu: openmpi: Pass explicit "--with-*" configure flags."Ludovic Courtès
This reverts commit eaa52b5baa8fbb26a79890561d0c40344d1e1bf3, which would lead to build failures on systems other than x86_64-linux.
2019-11-15gnu: openmpi: Fix typo.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: For UCX, check the supported systems of UCX, not PSM2.
2019-11-15gnu: tomb: Use system's sudo.Eric Bavier
* gnu/packages/crypto.scm (tomb)[arguments]: Disallow references to the "sudo" input. Remove it's path from the wrapper.
2019-11-15gnu: tomb: Add lsof input for "ps" and "slam".Eric Bavier
* gnu/packages/crypto.scm (tomb)[inputs]: Add lsof. [arguments]: Add it to the wrapper PATH.
2019-11-15gnu: tomb: Update to 2.7.Eric Bavier
* gnu/packages/patches/tomb-fix-errors-on-open.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/crypto.scm (tomb): Update to 2.7. [source]: Use the patch.
2019-11-15gnu: CMake: Add version 3.15.5.Ivan Vilata-i-Balaguer
Add CMake version 3.15.5 but do not replace the existing version to avoid triggering the rebuild of all CMake-based packages. See <https://issues.guix.gnu.org/issue/38060>. * gnu/packages/cmake.scm (cmake-3.15.5): Add CMake 3.15.5. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-11-15gnu: ungoogled-chromium: Update to 78.0.3904.97-0.acaf163.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for Chromium 78. (%chromium-version): Set to 78.0.3904.97. (%ungoogled-revision): Set to acaf16383f264d8a2f24142ad054c9b4355771d3. (%debian-revision): Set to e43d74632091324774a5049668782dba7b09cf72. (%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes. (gentoo-patches, %auxiliary-patches): Remove variables. (ungoogled-chromium-source): Adjust Debian patches for 78. Don't apply %AUXILIARY-PATCHES. (libvpx/chromium): New variable. (ungoogled-chromium)[arguments]: Add substitution for ICU headers. Adjust other substitutions for 78. Remove obsolete workaround. Increase ulimit in 'build' phase. Don't install '22x22' icon, which no longer exists. [inputs]: Change from LIBVPX to LIBVPX/CHROMIUM. [properties]: Remove HIDDEN?. (ungoogled-chromium-wayland)[inputs]: Don't remove inherited inputs. (ungoogled-chromium-is-deprecated, ungoogled-chromium-wayland-is-deprecated): Remove variables.
2019-11-15gnu: gn: Enable tests.Marius Bakke
* gnu/packages/build-tools.scm (gn)[arguments]: Remove #:tests?. Override 'check' phase.
2019-11-15gnu: gn: Update to 0.0-1666.6e5ba2e.Marius Bakke
* gnu/packages/build-tools.scm (gn): Update to 0.0-1666.6e5ba2e. [arguments]: Do not override LDFLAGS.
2019-11-15gnu: openmpi: Raise the priority of the PSM2 component.Ludovic Courtès
This allows us to get better performance by default on machines with OmniPath hardware. * gnu/packages/patches/openmpi-psm2-priority.patch: New file. * gnu/packages/mpi.scm (openmpi)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-15gnu: psm: Add "debug" output.Ludovic Courtès
* gnu/packages/linux.scm (psm)[outputs]: New field.
2019-11-15gnu: openmpi, slurm: Switch to hwloc 2.x.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
2019-11-15gnu: hwloc: Update to 2.1.0.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-2.0): Rename to... (hwloc-2): ... this. Update to 2.1.0 (hwloc-2.0): Define as deprecated. * gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly.
2019-11-15gnu: slurm: Build shared libraries only.Ludovic Courtès
* gnu/packages/parallel.scm (slurm)[arguments]: Pass "--disable-static".
2019-11-15gnu: slurm: Update to 19.05.3-2.Ludovic Courtès
* gnu/packages/parallel.scm (slurm): Update to 19.05.3-2. [source](snippet): Keep "contribs/mpi" and its reference in 'Makefile.am'. [inputs]: Remove OPENSSL. [arguments]: Remove "--with-ssl". Add 'install-libpmi' phase.
2019-11-15gnu: Add Intel MPI Benchmarks.Ludovic Courtès
* gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable.
2019-11-15gnu: rdma-core: Update to 26.0.Ludovic Courtès
* gnu/packages/linux.scm (rdma-core): Update to 26.0. [arguments]: Add "-DRST2MAN_EXECUTABLE=..." to #:configure-flags. [native-inputs]: Add PYTHON-DOCUTILS.
2019-11-15gnu: rdma-core: Use the "write" ioctl mode.Ludovic Courtès
* gnu/packages/linux.scm (rdma-core)[arguments]: Add "-DIOCTL_MODE=write" to #:configure-flags.
2019-11-15gnu: openmpi: Pass explicit "--with-*" configure flags.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx", "--with-psm", and "--with-psm2".
2019-11-15gnu: ucx: Do not install static libraries.Ludovic Courtès
* gnu/packages/fabric-management.scm (ucx)[arguments]: Pass "--disable-static".
2019-11-15gnu: ucx: Enable InfiniBand support through Verbs.Ludovic Courtès
Until now, InfiniBand support was missing, as reported by "ucx_info -d" on a machine with InfiniBand networking. * gnu/packages/fabric-management.scm (ucx)[arguments]: Build with "--with-verbs".
2019-11-15gnu: git-annex: Update to 7.20191114.Kyle Meyer
* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20191114. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-15gnu: rtmidi: Update to 4.0.0.Pierre Langlois
* gnu/packages/audio.scm (rtmidi): Update to 4.0.0. [source]: Download tarball from upstream URL rather than the powertab github fork. [arguments]: Enable tests. Remove 'build and 'install phases and add a new 'noconfigure phase to prevent the bootstrap script from invoking configure. [home-page]: Update homepage to upstream URL. * gnu/packages/music.scm (powertabeditor)[arguments]: Add phase that substitutes the rtmidi #include directive to find the header. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-15gnu: freecad: Update to 0.18.4.John Soo
* gnu/packages/engineering.scm (freecad): Update to 0.18.4. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-15make-bootstrap: Adjust copied linux headers.Efraim Flashner
* guix/build/make-bootstrap.scm (copy-linux-headers): Remove header file 'a.out.h' is no longer part of the linux kernel headers.
2019-11-15gnu: emacs-flycheck-cpplint: Set cpplint path.Mathieu Othacehe
* gnu/packages/emacs-xyz.scm (emacs-flycheck-cpplint)[inputs]: Add cpplint. [arguments]: Add a set-cpplint-path phase to set the path of cpplint.
2019-11-15gnu: Add cpplint.Mathieu Othacehe
* gnu/packages/cpp.scm (cpplint): New variable.
2019-11-14gnu: fluidsynth: Update to 2.0.9.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.9.
2019-11-14gnu: perl-type-tiny: Update to 1.006000.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-type-tiny): Update to 1.006000.
2019-11-14gnu: msitools: Update to 0.100.Tobias Geerinckx-Rice
* gnu/packages/package-management.scm (msitools): Update to 0.100.
2019-11-14gnu: perl-mail-dkim: Update to 0.58.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (perl-mail-dkim): Update to 0.58.
2019-11-14gnu: Add m2-planet.Jan Nieuwenhuizen
* gnu/packages/mes.scm (m2-planet): New variable.
2019-11-14gnu: Add emacs-helm-fish-completion.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-helm-fish-completion): New variable.
2019-11-14gnu: r-gprofiler: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.7.0.
2019-11-14gnu: r-hexbin: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hexbin): Update to 1.28.0.
2019-11-14gnu: r-r-oo: Update to 1.23.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-oo): Update to 1.23.0.
2019-11-14gnu: r-glmnet: Update to 3.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-glmnet): Update to 3.0. [inputs]: Move gfortran from here... [native-inputs]: ...to here. [propagated-inputs]: Add r-shape.
2019-11-14gnu: r-dt: Update to 0.10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.10.
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