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2020-11-23gnu: eigen: Add upstream bugfix patch.Tobias Geerinckx-Rice
This fixes the build of nanopolish, imp, and others. Reported by apteryx in #guix. * gnu/packages/algebra.scm (eigen)[source]: Add patch. * gnu/packages/patches/eigen-remove-openmp-error-counting.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-23gnu: parallel: Update to 20201122.Tobias Geerinckx-Rice
* gnu/packages/parallel.scm (parallel): Update to 20201122.
2020-11-23gnu: Add emacs-orderless.Niklas Eklund
* gnu/packages/emacs-xyz.scm (emacs-orderless): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-11-23gnu: guile-chickadee: Update to 0.6.0.David Thompson
2020-11-23gnu: Deprecate guile3.0-chickadee.David Thompson
2020-11-23gnu: Add cwltool.Efraim Flashner
* gnu/packages/bioinformatics.scm (cwltool): New variable.
2020-11-23gnu: Add python-shellescape.Efraim Flashner
* gnu/packages/python-xyz.scm (python-shellescape): New variable.
2020-11-23gnu: Add python-arcp.Efraim Flashner
* gnu/packages/python-xyz.scm (python-arcp): New variable.
2020-11-23gnu: Add python-schema-salad.Efraim Flashner
* gnu/packages/bioinformatics.scm (python-schema-salad): New variable.
2020-11-23gnu: Add python-cachecontrol-0.11.Efraim Flashner
* gnu/packages/python-web.scm (python-cachecontrol-0.11): New variable.
2020-11-23gnu: Add python-prov.Efraim Flashner
* gnu/packages/python-xyz.scm (python-prov): New variable.
2020-11-23gnu: Add python-bagit.Efraim Flashner
* gnu/packages/python-xyz.scm (python-bagit): New variable.
2020-11-23gnu: python-pydot: Update home-page URI.Efraim Flashner
* gnu/packages/graphviz.scm (python-pydot)[home-page]: Update to new home-page URI.
2020-11-23gnu: python-pydot: Run tests.Efraim Flashner
* gnu/packges/graphviz.scm (python-pydot)[source]: Add patch. [arguments]: Override check phase. [native-inputs]: Add graphviz. * gnu/packages/patches/python-pydot-regression-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-11-23gnu: python-pydot: Update to 1.4.1.Efraim Flashner
* gnu/packages/graphviz.scm (python-pydot): Update to 1.4.1.
2020-11-23gnu: grub: Fix cross-compiling for other architectures.Efraim Flashner
Reported by cbaines and xelxebar on IRC. * gnu/packages/bootloaders.scm (grub)[arguments]: In custom 'set-freetype-variables phase only use the native-inputs version of freetype.
2020-11-23store: Fix ensure-path docstring.Mathieu Othacehe
Suggested by Ludovic Courtès. * guix/store.scm (ensure-path): Fix the docstring.
2020-11-23gnu: Add djvusmooth.Guillaume Le Vaillant
* gnu/packages/djvu.scm (djvusmooth): New variable.
2020-11-23gnu: Add python-djvulibre.Guillaume Le Vaillant
* gnu/packages/python-xyz.scm (python-djvulibre): New variable.
2020-11-23etc: snippets: Prefill Common Lisp package names.Pierre Neidhardt
* etc/snippets/text-mode/guix-commit-message-add-cl-package: New file.
2020-11-23etc: snippets: Fix package name extraction.Pierre Neidhardt
* etc/snippets/text-mode/guix-commit-message-add-package: Properly extract name when the diff contains a very short `define-public ...` above the actual new package. This can happen when the above package is a small inherited definition or cl/ecl package.
2020-11-23gnu: lsof: Cross-compile.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof)[arguments]: Use CC-FOR-TARGET.
2020-11-23gnu: lsof: Make test failures fatal.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof)[source]: Add patch to make test suite failures stop the build. * gnu/packages/patches/lsof-fatal-test-failures.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-23gnu: lsof: Respect #:tests?.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof)[arguments]: The 'check phase takes and respects a TESTS? keyword.
2020-11-23gnu: lsof: Update to 4.94.0.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof): Update to 4.94.0. [source]: Switch to new git upstream. [native-inputs]: Add groff. [arguments]: Remove custom 'unpack phase. Add a 'build-man-page phase. Remove the upstreamed glibc@2.28 test fix.
2020-11-23gnu: hdparm: Update to 9.60.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (hdparm): Update to 9.60.
2020-11-23gnu: ipset: Update to 7.9.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (ipset): Update to 7.9.
2020-11-23gnu: ipset: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (ipset)[source, home-page]: Use HTTPS.
2020-11-23gnu: webkitgtk: Update to 2.30.3.Tobias Geerinckx-Rice
* gnu/packages/webkit.scm (webkitgtk): Update to 2.30.3.
2020-11-23gnu: python-pandocfilters: Update to 1.4.3.Tobias Geerinckx-Rice
* gnu/packages/textutils.scm (python-pandocfilters): Update to 1.4.3.
2020-11-23gnu: facter: Update to 4.0.46.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (facter): Update to 4.0.46.
2020-11-23gnu: duplicity: Update to 0.8.17.Tobias Geerinckx-Rice
* gnu/packages/backup.scm (duplicity): Update to 0.8.17.
2020-11-22gnu: ocaml-cairo2: Patch test phase.Brett Gilio
* gnu/local.mk (ocaml-cairo2-caml_ba_array_fix.patch): Add ref. * gnu/packages/ocaml.scm (ocaml-cairo2): Utilize patch. * gnu/packages/patches/ocaml-cairo2-caml_ba_array-fix.patch: Add file.
2020-11-22gnu: linux-libre 4.4: Update to 4.4.245.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.245. (linux-libre-4.4-pristine-source): Update hash.
2020-11-22gnu: linux-libre 4.9: Update to 4.9.245.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.245. (linux-libre-4.9-pristine-source): Update hash.
2020-11-22gnu: linux-libre 4.14: Update to 4.14.208.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.208. (linux-libre-4.14-pristine-source): Update hash.
2020-11-22gnu: linux-libre 4.19: :Update to 4.19.159.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.159. (linux-libre-4.19-pristine-source): Update hash.
2020-11-22gnu: linux-libre 5.4: Update to 5.4.79.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.79. (linux-libre-5.4-pristine-source): Update hash.
2020-11-22gnu: linux-libre: Update to 5.9.10.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.9-version): Update to 5.9.10. (linux-libre-5.9-pristine-source): Update hash.
2020-11-22gnu: Add python-transient.Brett Gilio
* gnu/packages/virtualization.scm (python-transient): New variable.
2020-11-22gnu: python-marshmallow: Update to 3.9.1.Brett Gilio
* gnu/packages/python-xyz.scm (python-marshmallow): Update to 3.9.1.
2020-11-23gnu: exa: Add missing arguments keyword.Marius Bakke
This was inadvertently removed in 3dbf3a7f516cb5576ce77d9545cfa56b741f279b. * gnu/packages/rust-apps.scm (exa)[arguments]: Add #:phases.
2020-11-22build-system/cargo: Set gettext environment variable when available.Efraim Flashner
* guix/build/cargo-build-system.scm (configure): When gettext is available in the build environment set the GETTEXT_SYSTEM variable. * gnu/packages/crates-io.scm (rust-gettext-rs-0.5, rust-gettext-rs-0.4, rust-gettext-sys-0.19)[arguments]: Remove phase to help find system gettext.
2020-11-22gnu: rust-slog-2.5: Rename to rust-slog-2.Efraim Flashner
* gnu/packages/crates-io.scm (rust-slog-2.5): Rename to rust-slog-2. (rust-uuid-0.8, rust-uuid-0.7)[arguments]: Adjust accordingly.
2020-11-22gnu: rust-slog-2.4: Remove variable.Efraim Flashner
* gnu/packages/crates-io.scm (rust-slog-2.4): Remove variable. (rust-uuid-0.7)[arguments]: Replace rust-slog-2.4 with 2.5.
2020-11-22build-system/cargo: Set libclang environment variable when available.Efraim Flashner
* guix/build/cargo-build-system.scm (configure): When clang is available in the build environment set the LIBCLANG_PATH variable. * gnu/packages/crates-graphics.scm (rust-aom-sys-0.1, uust-dav1d-sys-0.3), * gnu/packages/crates-io.scm (rust-bindgen-0.55, rust-bindgen-0.54, rust-bindgen-0.53, rust-bindgen-0.52, rust-cexpr-0.4, rust-cexpr-0.3, rust-cexpr-0.2, rust-clang-sys-1, rust-clang-sys-0.29, rust-clang-sys-0.26, rust-clang-sys-0.22, rust-clang-sys-0.11, rust-libpijul-0.12, rust-nettle-7, rust-nettle-sys-2, rust-sequoia-openpgp-0.9)[arguments]: Remove phases which set an environment variable to find clang. [inputs]: Rename instances of libclang with clang.
2020-11-22build-system/cargo: Set openssl environment variable when available.Efraim Flashner
* guix/build/cargo-build-system.scm (configure): When openssl is available set the OPENSSL_DIR variable to discover its location. * gnu/packages/crates-io.scm (rust-curl-sys-0.4, rust-libgit2-sys-0.10, rust-libpijul-0.12, rust-libssh2-sys-0.2, rust-native-tls-0.2, rust-openssl-sys-0.9, rust-openssl-0.7, rust-trust-dns-rustls-0.6), * gnu/packages/rust-apps.scm (tokei, exa)[arguments]: Remove redundant setenv for openssl.
2020-11-22gnu: Add rust-thrussh-libsodium-0.1.John Soo
* gnu/packages/crates-io.scm (rust-thrussh-libsodium-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-11-22gnu: Add rust-shell-escape-0.1.John Soo
* gnu/packages/crates-io.scm (rust-shell-escape-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-11-22gnu: Add rust-tokio-net-0.2.John Soo
* gnu/packages/crates-io.scm (rust-tokio-net-0.2): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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