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2018-03-24guix: Rewrite build-docker-image to allow more paths.Chris Marusich
* guix/docker.scm (build-docker-image): Rename "path" argument to "prefix" to reflect the fact that it is used as a prefix for the symlink targets. Add the "paths" argument, and remove the "closure" argument, since it is now redundant. Add a "transformations" argument. * guix/scripts/pack.scm (docker-image): Read the profile's reference graph and provide its paths to build-docker-image via the new "paths" argument.
2018-03-24gnu: When building in a VM, share a temporary directory.Chris Marusich
* gnu/build/vm.scm (load-in-linux-vm): Make a shared temporary directory available in the VM. * gnu/system/vm.scm (%linux-vm-file-systems): Add a corresponding entry.
2018-03-24vm: Allow control of deduplication in root-partition-initializer.Chris Marusich
* gnu/build/vm.scm (root-partition-initializer): Add #:deduplicate? keyword argument.
2018-03-24tests: Add tests for "guix pack".Chris Marusich
* guix/scripts/pack.scm (bootstrap-xz): New variable. (%options) <--bootstrap>: New option. (show-help): Document the new --bootstrap option. (guix-pack): When --bootstrap is specified, use the bootstrap Guile, tar, and xz to build the pack, and do not use any profile hooks or locales. * doc/guix.texi (Invoking guix pull): Document the new --bootstrap option. * tests/guix-pack.sh: New file. * Makefile.am (SH_TESTS): Add guix-pack.sh. * gnu/packages/package-management.scm (guix) <inputs>: Add util-linux.
2018-03-23gnu: Add r-catdap.Sahithi Yarlagadda
* gnu/packages/cran.scm (r-catdap): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-23gnu: Keep Krita 3 along with Krita 4.Leo Famulari
* gnu/packages/kde.scm (krita-3): New variable.
2018-03-23gnu: java-aqute-bnd-annotation: Update to 3.5.0.Gábor Boskovits
* gnu/packages/java.scm (java-aqute-bnd-annotation): Update to 3.5.0. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2018-03-23doc: Move Cgit Service documentation to the Version Control section.Leo Famulari
* doc/guix.texi (Miscellaneous Services): Move the Cgit Service to section Version Control Services.
2018-03-23gexp: 'program-file' has a new #:module-path parameter.Ludovic Courtès
* guix/gexp.scm (<program-file>): Add 'path' field. (program-file): Add #:module-path parameter and honor it. (program-file-compiler): Honor the 'path' field. * tests/gexp.scm ("program-file #:module-path"): New test. * doc/guix.texi (G-Expressions): Update.
2018-03-23gexp: 'gexp->script' and 'gexp->file' have a new #:module-path parameter.Ludovic Courtès
* guix/gexp.scm (load-path-expression): Add 'path' optional parameter. (gexp->script): Add #:module-path and honor it. (gexp->file): Likewise. * tests/gexp.scm ("gexp->script #:module-path"): New test. * doc/guix.texi (G-Expressions): Update accordingly.
2018-03-23gnu: git: Update to 2.16.3.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (git): Update to 2.16.3.
2018-03-23gnu: libgee: Update to 0.20.1.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (libgee): Update to 0.20.1.
2018-03-23gnu: fribidi: Update to 1.0.2.Tobias Geerinckx-Rice
* gnu/packages/fribidi.scm (fribidi): Update to 1.0.2. [arguments]: Disable building documentation for now.
2018-03-23gnu: parallel: Update to 20180322.Tobias Geerinckx-Rice
* gnu/packages/parallel.scm (parallel): Update to 20180322.
2018-03-23gnu: coq-flocq: Use predictable source URI.Tobias Geerinckx-Rice
* gnu/packages/ocaml.scm (coq-flocq)[source]: Use predictable URI.
2018-03-23gnu: linux-libre@4.9: Update to 4.9.89.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.89.
2018-03-23gnu: linux-libre@4.4: Update to 4.4.123.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.123.
2018-03-22gnu: Add lyx.Danny Milosavljevic
* gnu/packages/patches/lyx-2.2.3-fix-test.patch: New file. * gnu/local.mk: Add it. * gnu/packages/tex.scm (lyx): New variable.
2018-03-22gnu: node: Update to 9.9.0.Jelle Licht
* gnu/packages/node.scm (node): Update to 9.9.0.
2018-03-22gnu: krita: Update to 4.0.0.Leo Famulari
* gnu/packages/kde.scm (krita): Update to 4.0.0.
2018-03-22gnu: darktable: Update to 2.4.2.Leo Famulari
* gnu/packages/photo.scm (darktable): Update to 2.4.2.
2018-03-22gnu: r-bookdown: Do not propagate ghc-pandoc.Ricardo Wurmus
This package propagates r-rmarkdown, which propagates its own variant of Pandoc. * gnu/packages/bioinformatics.scm (r-bookdown)[propagated-inputs]: Remove ghc-pandoc.
2018-03-22gnu: nginx: Update to 1.13.10.Marius Bakke
* gnu/packages/web.scm (nginx): Update to 1.13.10. [arguments]: Update kernel version to match glibc minimum requirement.
2018-03-22gnu: nmap: Update to 7.70.Marius Bakke
* gnu/packages/admin.scm (nmap): Update to 7.70. [source](snippet): End on #t. [inputs]: Add ZLIB.
2018-03-22gnu: talloc: Update to 2.1.12.Marius Bakke
* gnu/packages/samba.scm (talloc): Update to 2.1.12.
2018-03-22gnu: certbot: Update to 0.22.2.Marius Bakke
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.2.
2018-03-22gnu: python-cryptography: Update to 2.2.1.Marius Bakke
* gnu/packages/python-crypto.scm (python-cryptography-vectors, python-cryptography): Update to 2.2.1.
2018-03-22publish: Always build a new derivation for the "/log/NAME" test.Ludovic Courtès
Fixes <https://bugs.gnu.org/30868>. Reported by Martin Castillo <castilma@uni-bremen.de>. * tests/publish.scm ("/log/NAME"): Use #$(random-text) in the builder.
2018-03-22publish: Add test for non-GET queries.Ludovic Courtès
* tests/publish.scm ("non-GET query"): New test.
2018-03-22gnu: Add supercollider.Maxim Cournoyer
* gnu/packages/audio.scm (supercollider): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-22gnu: yaml-cpp: Update to 0.6.1.Maxim Cournoyer
* gnu/packages/serialization.scm (yaml-cpp): Update to 0.6.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-22gnu: Add boost-sync.Maxim Cournoyer
* gnu/packages/boost.scm (boost-sync): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-22doc: Add index entries for realtime and jackd in the manual.Maxim Cournoyer
* doc/guix.texi (Base Services): Add realtime and jackd indices to the `pam-limits-service' service, as the examples shows how they can be configured. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-22gnu: shepherd: Update to 0.4.0.Ludovic Courtès
* gnu/packages/admin.scm (shepherd): Update to 0.4.0. Remove patches. * gnu/packages/patches/shepherd-close-fds.patch, gnu/packages/patches/shepherd-herd-status-sorted.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/services/admin.scm (%default-rotations): Remove /var/log/shepherd.log.
2018-03-22services: rottlog: Add /var/log/debug to '%default-rotations'.Ludovic Courtès
* gnu/services/admin.scm (%rotated-files): Add "/var/log/debug".
2018-03-21gnu: linux-libre: Update to 4.15.12.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.12. (%linux-libre-hash): Update hash.
2018-03-21gnu: linux-libre@4.14: Update to 4.14.29.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.29. (%linux-libre-4.14-hash): Update hash.
2018-03-22gnu: emacs-deferred: Update to 0.5.1.Vasile Dumitrascu
* gnu/packages/emacs.scm (emacs-deferred): Update to 0.5.1. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-22gnu: emacs-clojure-mode: Update to 5.6.1.Vasile Dumitrascu
* gnu/packages/emacs.scm (emacs-clojure-mode): Update to 5.6.1.
2018-03-21Fix copyright notice for Nils Gillmann.Leo Famulari
This is a followup to commit af23710ff522bb4e6cedf841c4fb977d96c9d8b3. * gnu/packages/linux.scm: Fix name and email address for Nils Gillmann.
2018-03-21gnu: mpd: Update to 0.20.18.Leo Famulari
* gnu/packages/mpd.scm (mpd): Update to 0.20.18.
2018-03-21gnu: Add tinyscheme.Tobias Geerinckx-Rice
* gnu/packages/scheme.scm (tinyscheme): New public variable.
2018-03-21gnu: libosinfo: Update usb.ids.Tobias Geerinckx-Rice
This follows up commit 0def9120882f90372fd6bb2e80e8330d67745610, which tried to use the CVS ID as the SVN revision, which unfortunately doesn't work. * gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Update revision and hash for ‘usb.ids’.
2018-03-21gnu: rawtherapee: Update to 5.4.Leo Famulari
* gnu/packages/photo.scm (rawtherapee): Update to 5.4.
2018-03-21gnu: pigx-chipseq: Update to 0.0.10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.10. [inputs]: Remove r-rcas and duplicate of snakemake; add r-biocparallel, r-biostrings, r-dplyr, r-genomicalignments, rsamtools, r-s4vectors, r-tibble, r-tidyr, r-htmlwidgets, and r-rmarkdown.
2018-03-21gnu: libosinfo: Fix URL for usb.ids.Danny Milosavljevic
Fixes <http://bugs.gnu.org/30890>. * gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Fix URL of "usb.ids".
2018-03-21gnu: texlive-fonts-amsfonts: Make build reproducible.Danny Milosavljevic
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[arguments]<#:phases>[build]: Make build reproducible.
2018-03-20gnu: util-linux: Fix CVE-2018-7738 without grafting.Leo Famulari
* gnu/packages/linux.scm (util-linux)[replacement]: Remove field. (util-linux-2.31.1): New variable. * gnu/system.scm (%base-packages): Use util-linux-2.31.1.
2018-03-20gnu: gparted: Update to 0.31.0.Tobias Geerinckx-Rice
* gnu/packages/disk.scm (gparted): Update to 0.31.0.
2018-03-20gnu: coq-flocq: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/ocaml.scm (coq-flocq)[arguments]: Substitute INVOKE for SYSTEM* and end all phases with an explicit #t.
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