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2016-11-29Merge branch 'master' into python-build-systemHartmut Goebel
2016-11-29gnu: wicd: Fix build.Hartmut Goebel
* gnu/packages/wicd.scm (wicd) [arguments]: Disable installation via setuptools (and --single-version-externally-managed).
2016-11-29gnu: wxPython: Remove useless inputs.Hartmut Goebel
* gnu/packages/wxwidgets.scm (python2-wxpython) [native-inputs]: Remove setuptools, which is already included in python.
2016-11-29gnu: wxPython: Fix build.Hartmut Goebel
* gnu/packages/wxwidgets.scm (python2-wxpython) [arguments]: Disable installation via setuptools (and --single-version-externally-managed).
2016-11-29gnu: oxygen-icons: Add 'upstream-name' property.Ludovic Courtès
Fixes <http://bugs.gnu.org/25020>. Reported by Hartmut Goebel <h.goebel@goebel-consult.de>. * gnu/packages/kde-frameworks.scm (oxygen-icons)[properties]: New field.
2016-11-29gnu-maintenance: 'latest-kde-release' honors 'upstream-name' properties.Ludovic Courtès
* guix/gnu-maintenance.scm (latest-kde-release): Honor the 'upstream-name' property of PACKAGE.
2016-11-29refresh: Warn about packages that lack an updater.Ludovic Courtès
* guix/upstream.scm (package-update-path): Rename to... (package-latest-release): ... this. Remove 'version>?' check. (package-latest-release*): New procedure. (package-update): Use it. * guix/scripts/refresh.scm (lookup-updater): Rename to... (lookup-updater-by-name): ... this. (warn-no-updater): New procedure. (update-package): Add #:warn? parameter and honor it. (check-for-package-update): New procedure. (guix-refresh)[warn?]: New variable. Replace inline code when UPDATE? is false with a call to 'check-for-package-update'. Pass WARN? to 'check-for-package-update' and 'update-package'. * doc/guix.texi (Invoking guix refresh): Document it. Fix a couple of typos.
2016-11-29gnu: efl: Update to 1.18.3.Efraim Flashner
* gnu/packages/enlightenment.scm (efl): Update to 1.18.3.
2016-11-29gnu: wine: Use 'modify-phases' syntax.Efraim Flashner
* gnu/packages/wine.scm (wine)[arguments]: Use 'modify-phases' syntax.
2016-11-29gnu: wine: Update to 1.9.24.Efraim Flashner
* gnu/packages/wine.scm (wine): Update to 1.9.24. [home-page]: Use https.
2016-11-29gnu: Add non-session-manager.Ricardo Wurmus
* gnu/packages/music.scm (non-session-manager): New variable.
2016-11-29gnu: offlineimap: Update to 7.0.10.Efraim Flashner
* gnu/packages/mail.scm (offlineimap): Update to 7.0.10.
2016-11-29gnu: cairo: Fix CVE-2016-9082.Efraim Flashner
* gnu/packages/gtk.scm (cairo)[replacement]: New field. (cairo/fixed): New variable. (cairo-xcb)[source]: Use patch. [replacement]: New field, set false. * gnu/packages/pdf.scm (poppler)[inputs]: Custom cairo should be replaced by a new custom patched cairo. * gnu/packages/patches/cairo-CVE-2016-9082.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2016-11-29gnu: Add viewnior.Efraim Flashner
* gnu/packages/image-viewers.scm (viewnior): New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-11-29gnu: Add wgetpaste.Efraim Flashner
* gnu/packages/wget.scm (wgetpaste): New variable.
2016-11-29gnu: aspell-dict-en: Update to 2016.11.20-0.Efraim Flashner
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.11.20-0.
2016-11-29gnu: Allow nfs file systems to be automatically mounted.John Darrington
* gnu/build/file-systems.scm (mount-file-system): Append target addr= when mounting nfs filesystems.
2016-11-28gnu: perl-dbd-mysql: Update to 4.041 [security fix].Marius Bakke
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.041. [source]: Update CPAN URI.
2016-11-28vm: Avoid needless file copy in 'load-in-linux-vm'.Ludovic Courtès
Reported by Chris Webber. * gnu/build/vm.scm (load-in-linux-vm)[image-file]: Remove. Directly refer to OUTPUT instead.
2016-11-28pull: Set '%nix-instantiate' to a sensible value.Ludovic Courtès
Reported by ng0 <ng0@libertad.pw>. Fixes <http://bugs.gnu.org/25053>. * guix/build/pull.scm (build-guix): Replace "@NIX_INSTANTIATE@" in guix/config.scm with "nix-instantiate".
2016-11-28doc: Document NSS incompatibility issues on foreign distros.Ludovic Courtès
* doc/guix.texi (Application Setup)[Name Service Switch]: New subsection.
2016-11-28gnu: Add r-gkmsvm.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gkmsvm): New variable.
2016-11-28gnu: Add r-rocr.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rocr): New variable.
2016-11-28gnu: Add r-gplots.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gplots): New variable.
2016-11-28gnu: Add r-gdata.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gdata): New variable.
2016-11-28gnu: Add r-seqgl.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
2016-11-28gnu: Add r-chipkernels.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
2016-11-28gnu: Add r-gtools.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gtools): New variable.
2016-11-28gnu: Add r-kernlab.Ricardo Wurmus
* gnu/packages/machine-learning.scm (r-kernlab): New variable.
2016-11-28gnu: Add r-sfsmisc.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
2016-11-28gnu: Add r-wgcna.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
2016-11-28gnu: Add r-fastcluster.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fastcluster): New variable.
2016-11-28gnu: Add r-preprocesscore.Ricardo Wurmus
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
2016-11-28gnu: Add r-dynamictreecut.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
2016-11-28gnu: Add r-r4rna.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-r4rna): New variable.
2016-11-28gnu: Add r-spams.Ricardo Wurmus
* gnu/packages/statistics.scm (r-spams): New variable.
2016-11-28gnu: Add r-googlesheets.Ricardo Wurmus
* gnu/packages/statistics.scm (r-googlesheets): New variable.
2016-11-28gnu: Add r-cellranger.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cellranger): New variable.
2016-11-28gnu: Add r-rematch.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rematch): New variable.
2016-11-28doc: Suggest installing gvfs.Ricardo Wurmus
* gnu/system/examples/desktop.tmpl: Add gvfs to the system-wide list of packages.
2016-11-28gnu: lv2: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/audio.scm (lv2): Update to 1.14.0.
2016-11-28gnu: non-sequencer: Update to 1.9.5-2.a22f33f.Ricardo Wurmus
* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-2.a22f33f.
2016-11-28gnu: ntp: Update to 4.2.8p9.Efraim Flashner
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p9.
2016-11-28gnu: ntp: Fix indentation.Efraim Flashner
* gnu/packages/ntp.scm (ntp): Fix indentation to only use spaces.
2016-11-28gnu: Add editres.John Darrington
* gnu/packages/xorg.scm (editres): New variable.
2016-11-28gnu: Add newick-utils.Ben Woodcroft
* gnu/packages/bioinformatics.scm (newick-utils): New variable.
2016-11-27pull: Hack to allow compilation with older Guile-SSH packages.Ludovic Courtès
Reported by iyzsong@member.fsf.org (宋文武) at <https://lists.gnu.org/archive/html/guix-devel/2016-11/msg01045.html>. * build-aux/build-self.scm (build): Set 'LTDL_LIBRARY_PATH' when GUILE-SSH has a "0.9." version prefix.
2016-11-27gnu: jasper: Update to 2.0.0 [fixes security issues].Efraim Flashner
* gnu/packages/image.scm (jasper): Update to 2.0.0. [build-system]: Switch to cmake-build-system.
2016-11-27gnu: gphoto2: Update to 2.5.11.Tobias Geerinckx-Rice
* gnu/packages/photo.scm (gphoto2): Update to 2.5.11.
2016-11-27gnu: libgphoto2: Update to 2.5.11.Tobias Geerinckx-Rice
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.11.
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