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2015-12-13gnu: perl: Update to 5.22.0.Ludovic Courtès
* gnu/packages/perl.scm (perl)[source]: Update to 5.22.0. Remove "perl-module-pluggable-search.patch" since Module::Pluggable appears to be gone. [arguments] <configure-phase>: Adjust Cwd.pm file name. Replace -std=c89 with -std=gnu89. * gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads' phase. * gnu/packages/patches/perl-no-sys-dirs.patch: Update. * gnu/packages/patches/perl-module-pluggable-search.patch: Remove. * gnu-system.am (dist_patch_DATA): Adjust accordingly.
2015-12-12gnu: gmp: Disable parallel tests.Andreas Enge
* gnu/packages/multiprecision.scm (gmp)[arguments]: Disable parallel tests.
2015-12-12build: Add missing patches to the distribution.Ludovic Courtès
* gnu-system.am (dist_patch_DATA): Add glibc-hurd-extern-inline.patch and plink-1.07-unclobber-i.patch.
2015-12-12Merge branch 'master' into core-updatesLudovic Courtès
2015-12-12gnu: numactl: Update to 2.0.11.Andreas Enge
* gnu/packages/linux.scm (numactl)[source]: Update to 2.0.11. [native-inputs]: Drop autotools. [arguments]: Drop phase calling autogen.sh.
2015-12-11gnu: wget: Update to 1.17.1.Mark H Weaver
* gnu/packages/wget.scm (wget): Update to 1.17.1.
2015-12-11gnu: gcc: Use the system zlib.Ludovic Courtès
* gnu/packages/gcc.scm (gcc-4.7) <configure-flags>: Pass '--with-system-zlib'. * gnu/packages/commencement.scm (gcc-boot0)[arguments]: Remove '--with-system-zlib' from the configure flags. * gnu/packages/commencement.scm (zlib-final): New variable. (gcc-final)[arguments]: Add ZLIB-FINAL to #:allowed-references. Pass -L and -Wl,-rpath for zlib in LDFLAGS, as a configure flag. [inputs]: Add LD-WRAPPER-BOOT3 and ZLIB-FINAL.
2015-12-11gnu: gcc-final: Remove unnecessary CPPFLAGS.Ludovic Courtès
* gnu/packages/commencement.scm (gcc-final)[arguments]: Remove unnecessary CPPFLAGS from #:make-flags.
2015-12-11gnu: Move sparsehash to datastructures module.Ricardo Wurmus
* gnu/packages/crypto.scm (sparsehash): Move variable to... * gnu/packages/datastructures.scm: ...new file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-12-11gnu: Add r-lattice.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lattice): New variable.
2015-12-11gnu: Add r-gridbase.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gridbase): New variable.
2015-12-11gnu: Add r-plotrix.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotrix): New variable.
2015-12-11gnu: Add r-readr.Ricardo Wurmus
* gnu/packages/statistics.scm (r-readr): New variable.
2015-12-11gnu: Rename r-data.table to r-data-table.Ricardo Wurmus
* gnu/packages/statistics.scm (r-data.table): Rename variable ... (r-data-table): ... to this. [description]: Clarify relation to data.frame. [license]: Use correct license.
2015-12-11import: cran: Parse DESCRIPTION instead of HTML.Ricardo Wurmus
* guix/import/cran.scm (description->alist, listify, beautify-description, description->package): New procedures. (table-datum, downloads->url, nodes->text, cran-sxml->sexp): Remove proceduces. (latest-release): Use parsed DESCRIPTION instead of SXML. * tests/cran.scm: Rewrite to match importer.
2015-12-11import: cran: Match more license strings.Ricardo Wurmus
* guix/import/cran.scm (string->license): Match more license strings to license symbols.
2015-12-11gnu: Add snap-aligner.Ben Woodcroft
* gnu/packages/bioinformatics.scm (snap-aligner): New variable.
2015-12-11gnu: python-certifi: Update to 2015.11.20.1.Efraim Flashner
* gnu/packages/python.scm (python-certifi): Update to 2015.11.20.1. [source]: Change to pypi syntax.
2015-12-11gnu: gnumeric: Add python scripting support.Efraim Flashner
* gnu/packages/gnome.scm (gnumeric): Do it. [inputs]: Add python2, python2-pygobject-2.
2015-12-11gnu: gnumeric: Update to 1.12.24.Efraim Flashner
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.24. [inputs]: Add librsvg, libxslt. [arguments]: Use "modify-phases" syntax.
2015-12-11gnu: goffice: Update to 0.10.24.Efraim Flashner
* gnu/packages/gnome.scm (goffice): Update to 0.10.24.
2015-12-11gnu: gvfs: Update to 1.26.2.Efraim Flashner
* gnu/packages/gnome.scm (gvfs): Update to 1.26.2. [inputs]: Add gcr.
2015-12-11emacs: Handle compiled autoloads.Alex Kost
* emacs/guix-emacs.el (guix-emacs-autoloads-regexp): New variable. (guix-emacs-find-autoloads-in-directory): Return a list of autoloads without extensions.
2015-12-11gnu: linux-libre: Update to 4.3.2.Mark H Weaver
* gnu/packages/linux.scm (linux-libre): Update to 4.3.2. [native-inputs]: Add openssl. * gnu/packages/linux-libre-x86_64.conf, gnu/packages/linux-libre-i686.conf: Update for 4.3.x, based on <https://jxself.org/git/kernel-configs.git>.
2015-12-10gnu: python-requests: Update to 2.8.1.Efraim Flashner
* gnu/packages/python.scm (python-requests): Update to 2.8.1. [native-inputs]: Move python-setuptools here. [inputs]: Remove python-certifi. [propagated-inputs]: Add python-py, python-pytest, python-pytest-cov, python-wheel. [arguments]: Enable tests.
2015-12-10gnu: Add python-wheel.Efraim Flashner
* gnu/packages/python.scm (python-wheel, python2-wheel): New variables.
2015-12-10gnu: Add python-pytest-cov.Efraim Flashner
* gnu/packages/python.scm (python-pytest-cov, python2-pytest-cov): New variables.
2015-12-10gnu: Add libconfig.Roel Janssen
* gnu/packages/textutils.scm (libconfig): New variable.
2015-12-10gnu: python-pytz: Update to 2015.7.Efraim Flashner
* gnu/packages/python.scm (python-pytz): Update to 2015.7. [source]: Change uri to pypi's location. [home-page]: Change to new website. [license]: Change to expat.
2015-12-10gnu: ghc-cryptonite: Update description.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-cryptonite)[description]: Shorten overly technical package description.
2015-12-10gnu: python-biopython, python2-biopython: Update to 1.66.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): Update to 1.66. [source]: Use PyPi instead of biopython.org.
2015-12-10gnu: Add ghc-pandoc.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-pandoc): New variable.
2015-12-10gnu: Add ghc-http-client-tls.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-http-client-tls): New variable.
2015-12-10gnu: Add ghc-connection.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-connection): New variable.
2015-12-10gnu: Add ghc-socks.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-socks): New variable.
2015-12-10gnu: Add ghc-tls.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-tls): New variable.
2015-12-10gnu: Add ghc-x509-system.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-x509-system): New variable.
2015-12-10gnu: Add ghc-x509-validation.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-x509-validation): New variable.
2015-12-10gnu: Add ghc-x509-store.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-x509-store): New variable.
2015-12-10gnu: Add ghc-x509.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-x509): New variable.
2015-12-10gnu: Add ghc-memory.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-memory): New variable.
2015-12-10gnu: Add ghc-cryptonite.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-cryptonite): New variable.
2015-12-10gnu: Add ghc-tasty-kat.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-tasty-kat): New variable.
2015-12-10gnu: Add ghc-asn1-parse.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-asn1-parse): New variable.
2015-12-10gnu: Add ghc-asn1-encoding.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-asn1-encoding): New variable.
2015-12-10gnu: Add ghc-asn1-types.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-asn1-types): New variable.
2015-12-10gnu: Add ghc-pem.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-pem): New variable.
2015-12-10gnu: Add ghc-hourglass.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-hourglass): New variable.
2015-12-10gnu: Add ghc-byteable.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-byteable): New variable.
2015-12-10gnu: Add ghc-http-client.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-http-client): New variable.
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