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2022-07-03challenge: Do nothing when passed zero arguments.Ludovic Courtès
Previously, 'guix challenge' without arguments would list live store items that had been locally built. This was deemed confusing, especially since 'list-live' is an expensive operation. * guix/scripts/challenge.scm (guix-challenge): Warn and exit with 0 when FILES is empty. * doc/guix.texi (Invoking guix challenge): Update accordingly.
2022-07-02gnu: r-ifultools: Patch in removed macros to fix build.Ricardo Wurmus
* gnu/packages/cran.scm (r-ifultools)[arguments]: Define removed compatibility macros.
2022-07-02gnu: r-with-tests: Update to 4.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.1.
2022-07-02gnu: r-tcgabiolinks: Update to 2.24.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
2022-07-02gnu: r-bionetstat: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
2022-07-02gnu: r-bgeedb: Update to 2.22.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
2022-07-02gnu: r-ggbio: Update to 1.44.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
2022-07-02gnu: r-rsubread: Update to 2.10.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
2022-07-02gnu: r-biosigner: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02gnu: r-ropls: Update to 1.28.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02gnu: r-genomicscores: Update to 2.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2. [propagated-inputs]: Add r-httr.
2022-07-02gnu: r-clusterprofiler: Update to 4.4.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
2022-07-02gnu: r-batchelor: Update to 1.12.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
2022-07-02gnu: r-matrixgenerics: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
2022-07-02gnu: r-zellkonverter: Update to 1.6.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
2022-07-02gnu: r-simplifyenrichment: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
2022-07-02gnu: r-rtracklayer: Update to 1.56.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
2022-07-02gnu: r-organismdbi: Update to 1.38.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
2022-07-02gnu: r-limma: Update to 3.52.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
2022-07-02gnu: r-ensembldb: Update to 2.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
2022-07-02gnu: r-gld: Update to 2.6.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gld): Update to 2.6.5.
2022-07-02gnu: r-clubsandwich: Update to 0.5.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.7.
2022-07-02gnu: r-ranger: Update to 0.14.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ranger): Update to 0.14.1.
2022-07-02gnu: r-car: Update to 3.1-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-car): Update to 3.1-0.
2022-07-02gnu: r-gtools: Update to 3.9.2.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gtools): Update to 3.9.2.2.
2022-07-02gnu: r-r-rsp: Update to 0.45.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.45.0.
2022-07-02gnu: r-r-utils: Update to 2.12.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-utils): Update to 2.12.0.
2022-07-02gnu: r-r-methodss3: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.8.2.
2022-07-02gnu: r-rcpparmadillo: Update to 0.11.2.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.0.0.
2022-07-02gnu: r-dbplyr: Update to 2.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.2.1.
2022-07-02gnu: r-rlang: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 1.0.3.
2022-07-02gnu: r-dbi: Update to 1.1.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbi): Update to 1.1.3.
2022-07-02gnu: r-nlme: Update to 3.1-158.Ricardo Wurmus
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-158.
2022-07-02gnu: r-spacetime: Update to 1.2-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-spacetime): Update to 1.2-8. [native-inputs]: Add r-knitr.
2022-07-02gnu: r-pkgdown: Update to 2.0.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.5.
2022-07-02gnu: r-downlit: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-downlit): Update to 0.4.1. [propagated-inputs]: Add r-withr.
2022-07-02gnu: r-clustree: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-clustree): Update to 0.5.0.
2022-07-02gnu: r-phangorn: Update to 2.9.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-phangorn): Update to 2.9.0. [propagated-inputs]: Add r-generics.
2022-07-02gnu: r-parsnip: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-parsnip): Update to 1.0.0. [propagated-inputs]: Add r-pillar.
2022-07-02gnu: r-tidyposterior: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidyposterior): Update to 1.0.0.
2022-07-02gnu: r-dials: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dials): Update to 1.0.0. [propagated-inputs]: Add r-pillar.
2022-07-02gnu: r-rsample: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsample): Update to 1.0.0. [propagated-inputs]: Remove r-lifecycle; add r-glue and r-pillar.
2022-07-02gnu: r-lobstr: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-lobstr): Update to 1.1.2. [propagated-inputs]: Remove r-rcpp; add r-cpp11 and r-prettyunits.
2022-07-02gnu: r-igraph: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-igraph): Update to 1.3.2.
2022-07-02gnu: r-flexsurv: Update to 2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-flexsurv): Update to 2.2. [propagated-inputs]: Add r-ggplot2 and r-statmod.
2022-07-02gnu: r-hardhat: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-hardhat): Update to 1.2.0.
2022-07-02gnu: r-packrat: Update to 0.8.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-packrat): Update to 0.8.1.
2022-07-02gnu: r-additivitytests: Update to 1.1-4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-additivitytests): Update to 1.1-4.1. [native-inputs]: Add r-knitr.
2022-07-02gnu: r-fda: Update to 6.0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-fda): Update to 6.0.4.
2022-07-02gnu: r-r-devices: Update to 2.17.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-r-devices): Update to 2.17.1.
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