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2018-03-29Merge branch 'master' into core-updatesMarius Bakke
2018-03-29gnu: cmake: Update to 3.11.0.Marius Bakke
* gnu/packages/cmake.scm (cmake): Update to 3.11.0. [arguments]: Enable fixed test. Adjust file substitutions. Run tests and "./configure" in parallel. (cmake-3.11): Remove variable. * gnu/packages/storage.scm (ceph)[arguments]: Remove #:cmake.
2018-03-29gnu: r-mutationalpatterns: Update to 1.4.3.Roel Janssen
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3; [propagated-inputs]: Remove r-gridextra.
2018-03-29gnu: kaiju: Update to 1.6.2.Roel Janssen
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2; [inputs]: Add zlib.
2018-03-29gnu: Add duperemove.Vasile Dumitrascu
* gnu/packages/disk.scm (duperemove): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-29gnu: Add python-debug.Ludovic Courtès
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>. * gnu/packages/python.scm (python-debug): New variable.
2018-03-29gnu: nano: Update to 2.9.5.Efraim Flashner
* gnu/packages/nano.scm (nano): Update to 2.9.5.
2018-03-29gnu: libgpg-error: Update to 1.28.Marius Bakke
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.28.
2018-03-29gnu: Add r-idr.Roel Janssen
* gnu/packages/cran.scm (r-idr): New variable.
2018-03-29gnu: Add r-amap.Roel Janssen
* gnu/packages/cran.scm (r-amap): New variable.
2018-03-29gnu: Add r-venndiagram.Roel Janssen
* gnu/packages/cran.scm (r-venndiagram): New variable.
2018-03-29gnu: Add r-pastecs.Roel Janssen
* gnu/packages/cran.scm (r-pastecs): New variable.
2018-03-29gnu: libusb4java: Adjust for building with libusb 1.0.22.Ricardo Wurmus
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove "-Werror" flag.
2018-03-29gnu: libusb-for-axoloti: Update patch.Ricardo Wurmus
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb 1.0.22.
2018-03-29gnu: Refactor boot-service-type and activation-service-type.Chris Marusich
* gnu/services.scm (boot-service-type) <compose>: Use the "identity" procedure instead of the "append" procedure because it more accurately reflects the intent, which is to simply return the single list of extensions to which fold-services applies the "compose" procedure. (activation-service-type) <compose>: Likewise.
2018-03-29doc: Improve <service-type> documentation.Chris Marusich
* doc/guix.texi (Service Reference): Correct and clarify some statements regarding the "compose" and "extend" procedures of <service-type>.
2018-03-29guix-install.sh: Explicitly set root's home directory.Chris Marusich
* etc/guix-install.sh (ROOT_HOME): New variable. (sys_create_store, sys_enable_guix_daemon, sys_authorize_build_farms): Use ROOT_HOME instead of ~root or the HOME environment variable. * doc/guix.texi (Binary Installation): Instead of assuming that ~ and $HOME refer to root's directory simply because commands are being run as root, explicilty refer to it via ~root. Fixes: <https://bugs.gnu.org/30728>
2018-03-29gnu: tcl, tk: Update to 8.6.8.Marius Bakke
* gnu/packages/tcl.scm (tcl, tk): Update to 8.6.8.
2018-03-29gnu: python: Update to 3.6.5.Marius Bakke
* gnu/packages/python.scm (python-3.6): Update to 3.6.5.
2018-03-29gnu: icu4c: Update to 61.1.Marius Bakke
* gnu/packages/icu4c.scm (icu4c): Update to 61.1.
2018-03-29gnu: util-linux: Update to 2.32.Marius Bakke
* gnu/packages/patches/util-linux-tests.patch: Adjust context. * gnu/packages/patches/util-linux-CVE-2018-7738.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/linux.scm (util-linux): Update to 2.32. [source](patches): Remove 'util-linux-CVE-2018-7738.patch'.
2018-03-28gnu: node: Update to 9.10.0.Jelle Licht
* gnu/packages/node.scm (node): Update to 9.10.0.
2018-03-28gnu: http-parser: Update to 2.8.0.Jelle Licht
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
2018-03-28gnu: xf86-video-ati: Update to 18.0.1.Marius Bakke
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
2018-03-28gnu: xf86-input-libinput: Update to 0.27.0.Marius Bakke
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0.
2018-03-28gnu: ntp: Update to 4.2.8p11 [security-fixes].Leo Famulari
Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}. * gnu/packages/ntp.scm (ntp): Update to 4.2.8p11.
2018-03-28gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739].Leo Famulari
* gnu/packages/tls.scm (openssl)[replacement]: New field. (openssl-1.0.2o): New variable.
2018-03-28gnu: Add r-parsedate.Konrad Hinsen
* gnu/packages/cran.scm (r-parsedate): New variable. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28gnu: mu: Fix tests failures triggered by DST.Maxim Cournoyer
* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28gnu: Add tcalc.Nadya Voronova
* gnu/packages/maths.scm (tcalc): New variables. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-03-28build: Build (guix ci) and (guix scripts weather) when HAVE_GUILE_JSON.Ludovic Courtès
* Makefile.am (MODULES): Move guix/ci.scm and guix/scripts/weather.scm to the HAVE_GUILE_JSON-guarded block.
2018-03-28weather: Report continuous integration stats.Ludovic Courtès
* guix/scripts/weather.scm (histogram, throughput, queued-subset): New procedures. (report-server-coverage): Report CI information. * doc/guix.texi (Invoking guix weather): Document it.
2018-03-28Add (guix ci).Ludovic Courtès
* guix/ci.scm: New file. * Makefile.am (MODULES): Add it.
2018-03-28gnu: culmus: Rename to font-culmus.Arun Isaac
* gnu/packages/fonts.scm (culmus): Rename to... (font-culmus): ...this. Re-indent.
2018-03-28gnu: culmus: Switch to font-build-system.Arun Isaac
* gnu/packages/fonts.scm (culmus): Switch to font-build-system. [arguments]: Replace system* with invoke.
2018-03-28gnu: font-linuxlibertine: Switch to font-build-system.Arun Isaac
* gnu/packages/fonts.scm (font-linuxlibertine): Switch to font-build-system. [arguments]: Replace system* with invoke.
2018-03-28gnu: font-lato: Switch to font-build-system.Arun Isaac
* gnu/packages/fonts.scm (font-lato): Switch to font-build-system. [source]: Use url-fetch/zipbomb.
2018-03-28gnu: openssl: Update to 1.0.2o.Mark H Weaver
* gnu/packages/tls.scm (openssl): Update to 1.0.2o. Remove snippet.
2018-03-28gnu: elogind: Fix build with glibc-2.27.Mark H Weaver
* gnu/packages/patches/elogind-glibc-2.27.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/freedesktop.scm (elogind)[source]: Add patch. [arguments]: Replace the bootstrap phase with what was previously the autogen phase.
2018-03-27gnu: liba52: Use invoke.Mark H Weaver
* gnu/packages/video.scm (liba52)[arguments]: Use invoke in the custom bootstrap phase.
2018-03-27gnu: aalib: Use invoke.Mark H Weaver
* gnu/packages/video.scm (aalib)[arguments]: Use invoke in the custom configure phase.
2018-03-27gnu: aspell-dict-*: Use invoke.Mark H Weaver
* gnu/packages/aspell.scm (aspell-dictionary): Use invoke in the custom configure phase.
2018-03-27tests: Use invoke and return #t from all builders.Mark H Weaver
* tests/packages.scm ("package-source-derivation, snippet", "trivial") ("trivial with local file as input", "trivial with source") ("trivial with system-dependent input", "trivial with #:allowed-references") ("--search-paths with pattern", "--search-paths with single-item search path") ("replacement also grafted"): In the builders, raise an exception on errors and otherwise return #t. Use invoke.
2018-03-27gnu: Use invoke and return #t from all builders.Mark H Weaver
* gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/avr.scm, gnu/packages/base.scm, gnu/packages/bioinformatics.scm, gnu/packages/certs.scm, gnu/packages/check.scm, gnu/packages/code.scm, gnu/packages/commencement.scm, gnu/packages/dictionaries.scm, gnu/packages/docbook.scm, gnu/packages/emacs.scm, gnu/packages/embedded.scm, gnu/packages/fonts.scm, gnu/packages/games.scm, gnu/packages/gnome.scm, gnu/packages/gnu-doc.scm, gnu/packages/guile.scm, gnu/packages/hurd.scm, gnu/packages/javascript.scm, gnu/packages/libreoffice.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lxde.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/pkg-config.scm, gnu/packages/qt.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/sdl.scm, gnu/packages/statistics.scm, gnu/packages/syncthing.scm, gnu/packages/tex.scm, gnu/packages/web.scm, gnu/packages/wine.scm, gnu/packages/xfce.scm: In the builders of packages using 'trivial-build-system', use invoke where appropriate, raise exceptions on errors, and otherwise return #t.
2018-03-27gnu: 0ad-data: Use invoke.Mark H Weaver
* gnu/packages/games.scm (0ad-data)[source]: Use invoke in the snippet.
2018-03-27gnu: vera: Use invoke.Mark H Weaver
* gnu/packages/dictionaries.scm (vera)[arguments]: Use invoke and remove vestigial plumbing in the builder.
2018-03-27gnu: sicp: Use invoke.Mark H Weaver
* gnu/packages/scheme.scm (sicp)[arguments]: Use invoke and remove vestigial plumbing in the builder.
2018-03-27gnu: icecat: Add fix for CVE-2018-5148.Mark H Weaver
* gnu/packages/gnuzilla.scm (icecat)[source]: Add the fix for CVE-2018-5148 from the upstream mozilla-esr52 repository.
2018-03-28gnu: curl: Use nghttp2's ‘lib’ output.Tobias Geerinckx-Rice
This follows up on commit 1300e4ee5bf97e7687aa0fa5497d87cf1afaa813, which was based on a monolithic nghttp2. * gnu/packages/curl.scm (curl)[inputs]: Use nghttp2's ‘lib’ output.
2018-03-27gnu: mupdf: Fix CVE-2018-{6544,1000051}.Leo Famulari
* gnu/packages/patches/mupdf-CVE-2018-1000051.patch, gnu/packages/patches/mupdf-CVE-2018-6544.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/pdf.scm (mupdf)[source]: Use them.
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