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2017-09-01gnu: python-ruamel.yaml: Update to 0.15.33.Tobias Geerinckx-Rice
* gnu/packages/serialization.scm (python-ruamel.yaml): Update to 0.15.33.
2017-09-01gnu: gparted: Update home page.Tobias Geerinckx-Rice
* gnu/packages/disk.scm (gparted)[home-page]: Use now-HTTPS gparted.org.
2017-09-01build: emacs-build-system: Make the install phase more helpful.Christopher Baines
Modify the install phase to detect when nothing has been installed, and error if this happens. This is preferable to continuing, and allowing the next phase to fail. Also, when nothing can be found to be installed, print out each file that was considered, along with the regular expressions that were used to include and exclude it. * gnu/build/emacs-build-system.scm (install-file?): Add additional error checking and logging.
2017-09-01gnu: r-minimal: Update to 3.4.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
2017-09-01gnu: vdirsyncer: Update to 0.16.2.Leo Famulari
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.2.
2017-09-01gnu: python-click-log: Update to 0.2.0.Leo Famulari
* gnu/packages/python.scm (python-click-log): Update to 0.2.0.
2017-09-01gnu: python-click-threading: Update to 0.4.3.Leo Famulari
* gnu/packages/python.scm (python-click-threading): Update to 0.4.3. [source]: Use pypi-uri.
2017-09-01gnu: python-icalendar: Update to 3.11.7.Leo Famulari
* gnu/packages/python.scm (python-icalendar): Update to 3.11.7.
2017-09-01gnu: r-genomicalignments: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.2.
2017-09-01gnu: r-tidyr: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0. [propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and r-tidyselect.
2017-09-01gnu: Add r-tidyselect.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyselect): New variable.
2017-09-01gnu: r-vegan: Update to 2.4-4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-4. [native-inputs]: Remove r-knitr.
2017-09-01gnu: r-maldiquant: Update to 1.16.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.4.
2017-09-01gnu: r-bookdown: Update to 0.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.5.
2017-09-01gnu: r-ksamples: Update to 1.2-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-7.
2017-09-01gnu: r-distillery: Update to 1.0-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-distillery): Update to 1.0-4.
2017-09-01gnu: r-sp: Update to 1.2-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-sp): Update to 1.2-5.
2017-09-01gnu: r-ggally: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggally): Update to 1.3.2.
2017-09-01gnu: r-reshape: Update to 0.8.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-reshape): Update to 0.8.7.
2017-09-01gnu: r-powerlaw: Update to 0.70.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.1.
2017-09-01gnu: r-circlize: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): Update to 0.4.1.
2017-09-01gnu: r-shape: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-shape): Update to 1.4.3.
2017-09-01gnu: r-tclust: Update to 1.3-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
2017-09-01gnu: r-fastcluster: Update to 1.1.24.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
2017-09-01gnu: r-rcpparmadillo: Update to 0.7.960.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
2017-09-01gnu: r-plotrix: Update to 3.6-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
2017-09-01gnu: r-httr: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1. [propagated-inputs]: Remove r-digest and r-stringr.
2017-09-01gnu: r-commonmark: Update to 1.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
2017-09-01gnu: r-ade4: Update to 1.7-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
2017-09-01gnu: r-tibble: Update to 1.3.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
2017-09-01gnu: r-rlang: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
2017-09-01gnu: r-knitr: Update to 1.17.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
2017-09-01gnu: r-bh: Update to 1.65.0-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
2017-09-01gnu: r-scales: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-scales): Update to 0.5.0. [propagated-inputs]: Add r-r6 and r-viridislite.
2017-09-01gnu: r-mgcv: Update to 1.8-19.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
2017-09-01gnu: r-matrix: Update to 1.2-11.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
2017-09-01gnu: r-servr: Update to 0.7.Ricardo Wurmus
* gnu/packages/web.scm (r-servr): Update to 0.7.
2017-09-01gnu: php: Update to 7.1.9.Julien Lepiller
* gnu/packages/php.scm (php): Update to 7.1.9.
2017-09-01gnu: java-slf4j-api: Fix tests.Julien Lepiller
* gnu/packages/java.scm (java-slf4j-api)[arguments]: Enable tests Adjust the jar content to prevent a test failure.
2017-09-01gnu: djvulibre: Remove timestamps from .svgz files.Z. Ren
* gnu/packages/djvu.scm (djvulibre)[arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01gnu: Add emacs-tuareg.Oleg Pykhalov
* gnu/packages/ocaml.scm (emacs-tuareg): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01gnu: emacs-ebuild-mode: Update to 1.37.ng0
* gnu/packages/emacs.scm (emacs-ebuild-mode): Update to 1.37. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01gnu: Add emacs-2048-game.ng0
* gnu/packages/emacs.scm (emacs-2048-game): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01packages: 'fold-packages' takes an optional 'modules' parameter.Ludovic Courtès
Suggested by Christopher Baines <mail@cbaines.net>. * gnu/packages.scm (fold-packages): Add optional 'modules' parameter and honor it.
2017-09-01scripts: Remove 'max-silent-time' from the default options.Maxim Cournoyer
Fixes <http://bugs.gnu.org/27157>. Having a finite default `max-silent-time' value for scripts such as 'guix environment' could lead to timeouts when building subtitutes; this was undesirable. This change also fixes client behavior to match the documentation, which is that by default the daemon's settings are honored. * guix/scripts/archive.scm (%default-options): Remove max-silent-time entry. * guix/scripts/copy.scm (%default-options): Likewise. * guix/scripts/environment.scm (%default-options): Likewise. * guix/scripts/pack.scm (%default-options): Likewise. * guix/scripts/package.scm (%default-options): Likewise. * guix/scripts/pull.scm (%default-options): Likewise. * guix/scripts/system.scm (%default-options): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01gnu: r-rcas: Correct license.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rcas)[license]: Use correct license.
2017-09-01gnu: r-rcas: Update to 1.3.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3.
2017-09-01gnu: mysql: Enable tests on aarch64.Efraim Flashner
* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling the tests on aarch64-linux.
2017-09-01gnu: vsearch: Update to 2.4.4.Ben Woodcroft
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4.
2017-09-01gnu: metabat: Update to 2.12.1.Ben Woodcroft
* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1. [source]: Remove it. Use url-fetch.
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