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2018-03-06gnu: htslib: Update to 1.7.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7. [arguments]: Remove field.
2018-03-06gnu: r-rhdf5: Make build reproducible.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and host system information from settings file.
2018-03-06gnu: r-lambda-r: Run unit tests.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit. [arguments]: Add build phase to delete test logs.
2018-03-06gnu: r-gtools: Make output deterministic.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid running tempdir at build time.
2018-03-06ui: 'load*' no longer fails on Guile 2.2.3 upon EACCES or similar.Ludovic Courtès
Previously, if ~/.cache was not write-accessible, 'guix' would exit with code 1 without printing any message. That was because the 'make-stack' call would fail since the exception (a 'system-error) came from 'compile-file', which was called at a point where TAG wasn't installed yet. Secondly, to mimick auto-compilation behavior, we just swallow 'system-error raised by 'compile-file'. Reported by Clément Lassieur. * guix/ui.scm (load*): Move 'compile-file' call in the dynamic extent of TAG. Catch 'system-error around it and ignore it.
2018-03-06gnu: emacs-transmission: Update to 0.12.1.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
2018-03-06gnu: haskell-mode: Fix find emacs-stream elisp directory.Oleg Pykhalov
* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with "\\.el$" in ‘el-dir’.
2018-03-06gnu: ovmf: Fix build and add FIXME.Rutger Helling
* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME about failing script.
2018-03-05gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version.Gábor Boskovits
* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>: Modify fix-version to use the distibution version of java-aqute-bndlib.
2018-03-05gnu: perl-email-address: Update to 1.909.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-email-address): Update to 1.909.
2018-03-05gnu: perl-sub-quote: Update to 2.005000.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
2018-03-05gnu: perl-xml-compile-cache: Update to 1.06.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
2018-03-05gnu: perl-xml-rss: Update to 1.60.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
2018-03-05gnu: editres: Update to 1.0.7.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (editres): Update to 1.0.7.
2018-03-05gnu: tocc, libtocc: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
2018-03-05gnu: perl-io-socket-ip: Update to 0.39.Tobias Geerinckx-Rice
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
2018-03-05gnu: perl-www-mechanize: Update to 1.87.Tobias Geerinckx-Rice
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
2018-03-05gnu: openvpn: Mark up description.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
2018-03-05gnu: openvpn: Update to 2.4.5.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
2018-03-05gnu: papi: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.
2018-03-05gnu: papi: Fix documentation location.Tobias Geerinckx-Rice
* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’ to a customary subdirectory of /share/doc.
2018-03-05gnu: xpra: Update to 2.2.5.Rutger Helling
* gnu/packages/xorg.scm (xpra): Update to 2.2.5.
2018-03-05ui: Better workaround for lack of '%fresh-auto-compile' on 2.2.3.Ludovic Courtès
Fixes <https://bugs.gnu.org/29226> for the most part. * guix/ui.scm (load*): Add call to 'compile-file' on 2.2.3.
2018-03-05nls: Add Simplified Chinese translation.Ludovic Courtès
2018-03-05build: Default to berlin.guixsd.org substitutes on aarch64.Ludovic Courtès
Suggested by Efraim Flashner <efraim@flashner.co.il>. * config-daemon.ac: Set 'guix_substitute_urls' to berlin.guixsd.org on aarch64.
2018-03-05build: Always use https substitute URLs.Ludovic Courtès
* config-daemon.ac: Remove GUILE_MODULE_AVAILABLE check for (gnutls).
2018-03-05doc: Adjust 'xset -fp' command to avoid symlinks.Ludovic Courtès
Fixes <https://bugs.gnu.org/30655>. Reported by Marco van Hulten <marco@hulten.org>. * doc/guix.texi (Application Setup): Adjust 'xset +fp' example.
2018-03-05gnu: linux-libre@4.14: Update to 4.14.24.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24. (%linux-libre-4.14-hash): Update hash.
2018-03-05gnu: linux-libre@4.9: Update to 4.9.86.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86.
2018-03-05gnu: linux-libre@4.4: Update to 4.4.120.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120.
2018-03-05gnu: Add emacs-terraform-mode.Christopher Baines
* gnu/packages/emacs.scm (emacs-terraform-mode): New variable.
2018-03-05gnu: Add emacs-hcl-mode.Christopher Baines
* gnu/packages/emacs.scm (emacs-hcl-mode): New variable.
2018-03-05services: Add openntpd service.Efraim Flashner
* gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to set openntpd daemon's user and localstatedir. Add a custom phase to not try to create said directory at install time. * gnu/services/networking.scm (<openntpd-configuration>): New record type. (openntpd-shepherd-service, openntpd-service-activation): New procedures. (openntpd-service-type): New variable. * doc/guix.texi (Networking Services): Add openntpd documentation.
2018-03-04gnu: papi: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt.
2018-03-04gnu: tomb: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/crypto.scm (tomb)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
2018-03-04gnu: tomb: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/crypto.scm (tomb)[home-page]: Use HTTPS.
2018-03-04gnu: footswitch: Update to 0.1-2.deedd87.Tobias Geerinckx-Rice
* gnu/packages/accessibility.scm (footswitch): Update to 0.1-2.deedd87.
2018-03-04gnu: footswitch: Remove redundant MKDIR-P.Tobias Geerinckx-Rice
* gnu/packages/accessibility.scm (footswitch)[arguments]: Remove MKDIR-P before INSTALL-FILE.
2018-03-04gnu: gitolite: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (gitolite): Substitute INVOKE for SYSTEM* and end phases with #t.
2018-03-04gnu: gitolite: Update to 3.6.7.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (gitolite): Update to 3.6.7.
2018-03-04gnu: ii, sic: Use HTTPS home pages.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (ii, sic)[home-page]: Use HTTPS.
2018-03-04gnu: ii: Update to 1.8.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (ii): Update to 1.8.
2018-03-04gnu: cloc: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/code.scm (cloc)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
2018-03-04gnu: cloc: Update to 1.76.Tobias Geerinckx-Rice
* gnu/packages/code.scm (cloc): Update to 1.76. [source]: Update origin URI scheme. [inputs]: Add perl-parallel-forkmanager.
2018-03-04gnu: liblo: Mark up description.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (liblo)[description]: Use @dfn.
2018-03-04gnu: multipath-tools: Update to 0.7.4.Marius Bakke
* gnu/packages/linux.scm (multipath-tools): Update to 0.7.4. [source]: Download using HTTPS.
2018-03-04gnu: freexl: Update to 1.0.5 [security fixes].Marius Bakke
Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and CVE-2018-7439. * gnu/packages/xml.scm (freexl): Update to 1.0.5.
2018-03-04gnu: ceph: Update to 12.2.4.Marius Bakke
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to upstream changes. * gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file. * gnu/packages/patches/ceph-rocksdb-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/storage.scm (ceph): Update to 12.2.4. [source](patches): Adjust. [arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags. Build with CMAKE-3.11. Adjust file substitutions. Wrap 'ceph' executable. [native-inputs]: Add GPERF. [inputs]: Replace BOOST with BOOST-1.66. Add PYTHON2-PRETTYTABLE.
2018-03-04gnu: Add cmake@3.11.Marius Bakke
* gnu/packages/cmake.scm (cmake-3.11): New public variable.
2018-03-04gnu: Add boost@1.66.0.Marius Bakke
* gnu/packages/boost.scm (boost-1.66): New public variable.
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