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Fixes <https://bugs.gnu.org/44261>.
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.
* gnu/packages/aux-files/run-in-namespace.c (exec_in_user_namespace):
Add call to 'prctl'. Call 'mount' for NEW_ROOT and define 'is_tmpfs'.
When IS_TMPFS is true, call 'umount' and 'rmdir' after 'waitpid';
otherwise, call 'rm_rf' only when 'waitpid' returns -1 the second time.
(exec_with_loader): Call 'prctl'. Remove NEW_ROOT only when 'waitpid'
returns -1 the second time, otherwise leave it behind.
* tests/guix-pack-relocatable.sh (wait_for_file): New function.
Add test.
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* doc/guix.texi (Defining Packages): Move documentation of
'package-input-rewriting' & co. to...
(Defining Package Variants): ... here. New node. Also document
'inherit' and 'options->transformation'.
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* guix/transformations.scm (evaluate-replacement-specs)
(package-git-url, evaluate-git-replacement-specs)
(transform-package-source-git-url)
(transform-package-toolchain): Use 'raise' and 'formatted-message'
instead of 'leave'.
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* guix/transformations.scm: New file.
* tests/scripts-build.scm: Rename to...
* tests/transformations.scm: ... this.
* Makefile.am (MODULES): Add 'guix/transformations.scm'.
(SCM_TESTS): Adjust to rename.
* guix/scripts/build.scm (numeric-extension?)
(tarball-base-name, <downloaded-file>, download-to-store*)
(compile-downloaded-file, package-with-source)
(transform-package-source, evaluate-replacement-specs)
(transform-package-inputs, transform-package-inputs/graft)
(%not-equal, package-git-url, evaluate-git-replacement-specs)
(transform-package-source-branch, transform-package-source-commit)
(transform-package-source-git-url, package-dependents/spec)
(package-toolchain-rewriting, transform-package-toolchain)
(transform-package-with-debug-info, transform-package-tests)
(%transformations, transformation-procedure, %transformation-options)
(show-transformation-options-help, options->transformation)
(package-transformations): Move to (guix transformations).
* guix/scripts/environment.scm: Adjust accordingly.
* guix/scripts/graph.scm: Likewise.
* guix/scripts/install.scm: Likewise.
* guix/scripts/pack.scm: Likewise.
* guix/scripts/package.scm: Likewise.
* guix/scripts/upgrade.scm: Likewise.
* po/guix/POTFILES.in: Add 'guix/transformations.scm'.
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* guix/scripts/build.scm (transform-package-source)
(transform-package-inputs, transform-package-inputs/graft)
(transform-package-source-branch, transform-package-source-commit)
(transform-package-source-git-url, transform-package-toolchain)
(transform-package-with-debug-info, transform-package-tests): Remove
'store' parameter.
(options->transformation, options->derivations): Adjust accordingly.
* guix/scripts/environment.scm (options/resolve-packages): Likewise.
* guix/scripts/graph.scm (guix-graph): Likewise.
* guix/scripts/pack.scm (guix-pack): Likewise.
* guix/scripts/package.scm (transaction-upgrade-entry): Likewise.
(process-actions): Likewise.
* tests/scripts-build.scm ("options->transformation, no transformations")
("options->transformation, with-source, replacement"):
Adjust tests.
("options->transformation, with-source")
("options->transformation, with-source, with version")
("options->transformation, with-source, PKG=URI"): Use 'lower-object' to
compute the store file name of the source.
("options->transformation, with-source, no matches"): Remove
'with-store' and adjust accordingly.
("options->transformation, with-input"): Likewise.
("options->transformation, with-graft"): Likewise.
("options->transformation, with-branch"): Likewise.
("options->transformation, with-commit"): Likewise.
("options->transformation, with-git-url"): Likewise.
("options->transformation, with-git-url + with-branch"): Likewise.
("options->transformation, with-c-toolchain"): Likewise.
("options->transformation, with-c-toolchain twice"): Likewise.
("options->transformation, with-c-toolchain, no effect"): Likewise.
("options->transformation, with-debug-info"): Likewise.
("options->transformation, without-tests"): Likewise.
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* guix/scripts/build.scm (package-with-source): Remove 'replacement'
field, which is innate since d5ec5ed7197d121130af6953378bcfd8929a9754.
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* guix/scripts/build.scm (<downloaded-file>): New record type.
(download-to-store*): New variable.
(compile-downloaded-file): New procedure.
(package-with-source): Remove 'store' parameter. Use 'downloaded-file'
instead of 'download-to-store'.
(transform-package-source): Adjust accordingly.
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* gnu/packages/ssh.scm (python-asyncssh): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/package-management.scm (xstow): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/fonts.scm (font-openmoji): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/patches/sbcl-geco-fix-organism-class.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lisp-xyz.scm (sbcl-geco)[source]: Use it.
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As reported in #43296, gnome-builder tries to be linked against the static
version of libselinux (propagated through glib/gio), failing to do so, as it
also wants to be a PIE. To keep the PIE, link it against the dynamic library.
Fixes <https://bugs.gnu.org/43296>.
* gnu/packages/gnome.scm (gnome-builder)[arguments]: Add 'fix-ninja' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/statistics.scm (r-lme4): Update to 1.1-25.
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* gnu/packages/statistics.scm (r-quantreg): Update to 5.75.
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* gnu/packages/statistics.scm (r-vgam): Update to 1.1-4.
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* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-17.
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* gnu/packages/statistics.scm (r-statmod): Update to 1.4.35.
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* gnu/packages/statistics.scm (r-ztable): Update to 0.2.2.
[propagated-inputs]: Remove r-moonbook; add r-rstudioapi.
[native-inputs]: Add r-knitr.
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* gnu/packages/statistics.scm (r-e1071): Update to 1.7-4.
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* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.32.2.
[propagated-inputs]: Remove r-bibtex, r-magrittr, and r-stringi.
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* gnu/packages/statistics.scm (r-dt): Update to 0.16.
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* gnu/packages/statistics.scm (r-domc): Update to 1.3.7.
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* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.16.
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* gnu/packages/statistics.scm (r-foreach): Update to 1.5.1.
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* gnu/packages/statistics.scm (r-iterators): Update to 1.0.13.
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* gnu/packages/statistics.scm (r-segmented): Update to 1.3-0.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.5.
[propagated-inputs]: Remove r-mime.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.1.0.0.
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* gnu/packages/statistics.scm (r-ade4): Update to 1.7-16.
[propagated-inputs]: Add r-progress.
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* gnu/packages/statistics.scm (r-data-table): Update to 1.13.2.
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* gnu/packages/statistics.scm (r-formula): Update to 1.2-4.
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* gnu/packages/statistics.scm (r-tibble): Update to 3.0.4.
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* gnu/packages/statistics.scm (r-rlang): Update to 0.4.8.
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* gnu/packages/statistics.scm (r-r6): Update to 2.5.0.
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* gnu/packages/statistics.scm (r-labeling): Update to 0.4.2.
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* gnu/packages/statistics.scm (r-digest): Update to 0.6.27.
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* gnu/packages/statistics.scm (r-nlme): Update to 3.1-150.
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* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-18.
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* gnu/packages/cran.scm (r-modeldata): Update to 0.1.0.
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* gnu/packages/cran.scm (r-parsnip): Update to 0.1.4.
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* gnu/packages/cran.scm (r-tidypredict): Update to 0.4.8.
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* gnu/packages/cran.scm (r-warp): Update to 0.2.0.
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* gnu/packages/cran.scm (r-workflows): Update to 0.2.1.
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* gnu/packages/cran.scm (r-igraph): Update to 1.2.6.
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* gnu/packages/cran.scm (r-rcppziggurat): Update to 0.1.6.
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* gnu/packages/cran.scm (r-cpp11): Update to 0.2.3.
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* gnu/packages/cran.scm (r-rismed): Update to 2.2.
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* gnu/packages/cran.scm (r-brms): Update to 2.14.0.
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* gnu/packages/cran.scm (r-iheatmapr): Update to 0.5.1.
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* gnu/packages/cran.scm (r-acet): Update to 1.8.1.
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