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* gnu/packages/password-utils.scm (password-store): New variable.
Co-authored-by: Andreas Enge <andreas@enge.fr>
Co-authored-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/check.scm (cppcheck): New variable.
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Fixes <http://bugs.gnu.org/22872>.
Reported by myglc2 <myglc2@gmail.com>.
* test-env.in: Define and export 'GUIX_BUILD_OPTIONS'.
* tests/guix-build.sh: When setting 'GUIX_BUILD_OPTIONS', make sure it
contains '--no-grafts'.
* tests/guix-package.sh: Likewise.
* tests/guix-daemon.sh: Add (%graft? #f) in Scheme snippets.
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Previously 'GUIX_BUILD_OPTIONS' would be honored, but 'guix graph' does
not support the common build options.
* guix/scripts/graph.scm (guix-graph): Use 'args-fold*' instead of
'parse-command-line'.
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* guix/scripts/build.scm (%options): Move --no-grafts to...
(%standard-build-options): ... here.
(show-help, show-build-options-help): Adjust accordingly.
* guix/scripts/archive.scm (%default-options): Add 'graft?'.
(guix-archive): Parametrize '%graft?'.
* guix/scripts/environment.scm (%default-options): Add 'graft?'.
(guix-environment): Parametrize '%graft?'.
* guix/scripts/package.scm (%default-options): Add 'graft?'.
(guix-package): Parametrize '%graft?'.
* guix/scripts/system.scm (%default-options): Add 'graft?'.
(guix-system): Parametrize 'graft?'.
* doc/guix.texi (Additional Build Options): Move --no-grafts to...
(Common Build Options): ... here.
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* guix/scripts/archive.scm (guix-archive): Use 'with-store' instead of
an explicit 'open-connection'.
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Fixes <https://debbugs.gnu.org/22876>
Reported by Christopher Allan Webber <cwebber@dustycloud.org>.
* gnu/packages/tls.scm (openssl-1.0.2g)[arguments]: Override the inherited
'configure' phase to add "enable-ssl2" as an argument to ./config.
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* gnu-system.am (dist_patch_DATA): Fix typo.
5e8276dcf4e3a05f69176dca816f00616e7f0593
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The necessary environment variables are set by 'etc/profile' now.
* gnu/packages/xfce.scm (xfce)[build-system]: Use 'trivial-build-system'.
[arguments]: Simplify.
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Fixes <http://bugs.gnu.org/22049>.
* gnu/packages/patches/ilmbase-fix-tests.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/graphics.scm (ilmbase)[source]: Add patch.
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* gnu/packages/ssh.scm (openssh): Update to 7.2p1.
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* gnu/packages/tls.scm (libressl): Update to 2.2.6.
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* gnu/packages/parallel.scm (parallel): Update to 20160222.
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* gnu/packages/bioinformatics.scm (r-go-db)[source]: Update data URL.
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* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.4.8.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.8.11.
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* gnu/packages/statistics.scm (r-ggplot2): Update to 2.0.0.
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CVE-2016-{0800,0705,0798,0797,0799,0702,0703,0704}].
See <http://openssl.org/news/secadv/20160301.txt>.
Also fixes <http://bugs.gnu.org/22831>.
* gnu/packages/patches/openssl-c-rehash-in.patch: New file.
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2g): New variable.
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Fixes <http://bugs.gnu.org/22139>.
* guix/grafts.scm (graft-derivation): Rename to...
(graft-derivation/shallow): ... this.
(graft-origin-file-name, item->deriver, non-self-references)
(cumulative-grafts, graft-derivation): New procedures
* tests/grafts.scm ("graft-derivation, grafted item is a direct
dependency"): Clarify title. Use 'grafted' instead of 'graft' to refer
to the grafted derivation.
("graft-derivation, grafted item is an indirect dependency")
("graft-derivation, no dependencies on grafted output"): New tests.
* guix/packages.scm (input-graft): Change to take a package instead of
an input.
(input-cross-graft): Likewise.
(fold-bag-dependencies): New procedure.
(bag-grafts): Rewrite in terms of 'fold-bag-dependencies'.
* tests/packages.scm ("package-derivation, indirect grafts"): Comment out.
* doc/guix.texi (Security Updates): Mention run-time dependencies and
recursive grafting.
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* gnu/packages/game-development.scm (tiled)[arguments]: Use 'modify-phases'.
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* gnu/packages/game-development.scm (tiled): Update to 0.15.1.
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* gnu/packages/bioinformatics.scm (pepr): New variable.
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* gnu/packages/bioinformatics.scm (bwa-pssm): New variable.
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* gnu/packages/datastructures.scm (gdsl): New variable.
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* gnu/packages/weechat.scm (weechat): Move from here ...
* gnu/packages/irc.scm (weechat): ... to here.
* gnu/packages/weechat.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove weechat.scm.
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* gnu/packages/irc.scm (irssi)[arguments]: Use 'modify-phases'.
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* gnu/packages/irssi.scm (irssi): Move from here ...
* gnu/packages/irc.scm (irssi): ... to here.
* gnu/packages/irssi.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove irssi.scm.
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* gnu/packages/irc.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
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* gnu/packages/kde.scm (snorenotify): New variable.
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* gnu/packages/kde.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Register it.
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* gnu/packages/kde-frameworks.scm (oxygen-icons): New variable.
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* gnu/packages/games.scm (desmume): New variable.
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* gnu/packages/curl.scm (curl)[inputs]: Use libssh2.
* gnu/packages/ssh.scm (libssh2-1.4): Remove variable.
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python2-pil is vulnerable to several security issues (CVE-2016-0740,
CVE-2016-0775, and CVE-2016-2533). Fortunately, python2-pillow provides
equivalent functionality, so this package can be cleanly removed.
* gnu/packages/python.scm (python2-pil): Remove variable.
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* gnu/packages/guile.scm (guile-for-guile-emacs)[native-search-paths]:
Use the same search paths as guile-2.0.
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* gnu/packages/mail.scm (msmtp)[arguments]: Install msmtpq scripts.
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This reduces nar size by a factor of 10.
Fixes <http://bugs.gnu.org/21949>.
* gnu/packages/version-control.scm (git)[arguments]: Pass
NO_INSTALL_HARDLINKS as #:make-flags.
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* gnu/packages/gnome.scm (libwnck-1): Rename this...
(libwnck-2): ...to this.
* gnu/packages/xfce.scm (xfce4-panel, xfce4-xkb-plugin, xfce4-session,
xfwm4, xfdesktop)[inputs]: Adapt.
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* gnu/packages/xorg.scm (xrandr): Update to 1.5.0.
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* gnu/packages/freedesktop.scm (libqmi): Update to 1.12.8.
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* gnu/packages/freedesktop.scm (wayland): Update to 1.10.0.
[arguments]: Disable parallel tests.
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* gnu/packages/freedesktop.scm (libinput): Update to 1.2.0.
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* gnu/packages/python.scm (python-tornado): Update to 4.3.
[native-inputs]: Add python-backports-abc.
(python2-tornado)[inputs]: Add python2-singledispatch.
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* gnu/packages/python.scm (python-backports-abc): New variable.
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* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (bitlbee): Update to 3.4.1.
[source]: Remove patch.
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Before that, outputs of a derivation could be left referring to the
ungrafted version of the derivation.
* guix/grafts.scm (graft-derivation)[outputs]: Change to a list of
name/file pairs.
* guix/grafts.scm (graft-derivation)[build]: Add 'old-outputs' variable
and use it when computing 'mapping'. Use 'mapping' directly.
* tests/grafts.scm ("graft-derivation, multiple outputs"): New test.
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* guix/grafts.scm (graft-derivation)[output-names]: Use
'derivation-output-names'.
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* guix/build/graft.scm (rewrite-directory): Add 'umask' call.
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* gnu/packages/linux.scm (btrfs-progs): Update to 4.4.1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/scribus.scm (scribus): Update to 1.5.1.
[source]: Remove patch.
* gnu/packages/patches/scribus-qobject.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
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