Age | Commit message (Collapse) | Author |
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* gnu/packages/boost.scm (boost): Update to 1.60.0.
[source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.
Also fix dependent packages:
* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
[arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
(libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
(librevenge)[inputs]: Move boost from here...
[propogated-inputs]: to here.
[arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
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* gnu/packages/boost.scm (boost)[arguments]: Use modify-phases.
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* Makefile.am (SCM_TESTS, SH_TESTS, TESTS, AM_TESTS_ENVIRONMENT)
(SCM_LOG_COMPILER, SH_LOG_COMPILER, AM_SCM_LOG_FLAGS)
(AM_SH_LOG_FLAGS): Move within 'if CAN_RUN_TESTS'.
(check-local) [!CAN_RUN_TESTS]: New target.
* daemon.am (AM_TESTS_ENVIRONMENT, TESTS): Ditto.
* m4/guix.m4 (GUIX_CHECK_FILE_NAME_LIMITS): Add parameter and set it.
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* m4/guix.m4 (GUIX_TEST_HASH_BANG_LENGTH): New macro.
(GUIX_CHECK_FILE_NAME_LIMITS): Use it. Warn against long hash bang
lines in tests.
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* doc/images/bootstrap-packages.dot: New file.
* doc.am (DOT_FILES): Add it.
* doc/guix.texi (Bootstrapping): Show 'guix graph' commands. Includes
'images/bootstrap-packages' and comment it.
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* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
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* gnu/packages/code.scm (global)[arguments]: Use modify-phases syntax.
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* gnu/packages/code.scm (global): Update to 6.5.2.
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* gnu/packages/java.scm (icedtea-6)[arguments]: Change the directory
prefix in the "unpack" phase to "icedtea6-".
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* gnu/packages/linux.scm (linux-libre): Update to 4.4.
* gnu/packages/linux-libre-i686.conf,
gnu/packages/linux-libre-x86_64.conf: Update from
<https://jxself.org/git/kernel-configs.git>.
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* gnu/packages/bioinformatics.scm (fxtract): New variable.
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* gnu/packages/video.scm (youtube-dl): Update to 2016.01.09.
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* gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl5.
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* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases
syntax.
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* gnu/packages/man.scm (man-pages): Update to 4.04.
[source]: Add alternate location.
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* doc.am (.dot.png, .dot.pdf, .dot.eps): Put the generated files into
$(srcdir).
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* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'. Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
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* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
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* gnu/packages/statistics.scm (r): Update to 3.2.3.
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* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
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* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
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* gnu/packages/linux.scm (i2c-tools)[source]: Update URL.
[home-page]: Update URL.
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* gnu/packages/linux.scm (lm-sensors)[source]: Update URL.
[home-page]: Update URL.
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* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
[arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
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Suggested by swedebugia <swedebugia@riseup.net>.
* guix/build-system/python.scm (pypi-uri): Add 'extension' parameter and
use it.
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* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is
required by 'r-impute' for 'gfortran'.
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* gnu/packages/xorg.scm (xterm): Update to 322.
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* gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
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* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
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* doc/guix.texi (Networking Services): Document network-manager-service.
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* doc/guix.texi (Invoking guix package): Add elaborate --search example
using recsel and sexes.
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* gnu/packages/textutils.scm (pfff): New variable.
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This is a heavy-weight and uncommon feature. See
<http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html>.
* gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'.
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* emacs/guix-main.scm (%package-param-alist): Add 'systems'.
* emacs/guix-ui-package.el (guix-package-info-insert-systems): New
procedure.
(guix-package-info-format): Add it.
(guix-output-info-format): Likewise.
(guix-package-info-titles): Add "Supported systems" title.
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* gnu/packages/bioinformatics.scm (r-genomation): New variable.
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* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
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* gnu/packages/bioinformatics.scm (r-impute): New variable.
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* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
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* gnu/packages/statistics.scm (r-plotly): New variable.
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* gnu/packages/statistics.scm (r-viridis): New variable.
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* gnu/packages/bioinformatics.scm (r-topgo): New variable.
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* gnu/packages/statistics.scm (r-matrixstats): New variable.
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* gnu/packages/statistics.scm (r-r-rsp): New variable.
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* gnu/packages/statistics.scm (r-r-cache): New variable.
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* gnu/packages/statistics.scm (r-r-utils): New variable.
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* gnu/packages/statistics.scm (r-r-oo): New variable.
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* gnu/packages/statistics.scm (r-r-methodss3): New variable.
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* gnu/packages/statistics.scm (r-base64enc): New variable.
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* gnu/packages/statistics.scm (r-dt): New variable.
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* gnu/packages/statistics.scm (r-sparsem): New variable.
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