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2017-12-18gnu: libjpeg-turbo: Update to 1.5.3.Marius Bakke
* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.3.
2017-12-18gnu: libsodium: Update to 1.0.16.Marius Bakke
* gnu/packages/crypto.scm (libsodium): Update to 1.0.16.
2017-12-18gnu: expect: Update to 5.45.3.Marius Bakke
* gnu/packages/tcl.scm (expect): Update to 5.45.3.
2017-12-18gnu: deutex: Update to 5.1.0.Kei Kebreau
* gnu/packages/games.scm (deutex): Update to 5.1.0.
2017-12-18doc: Clarify treatment of the root account.Ludovic Courtès
* doc/guix.texi (operating-system Reference): Clarify the situation of UID 0.
2017-12-18guix gc: '--verify=foo' is reported as an error.Ludovic Courtès
Fixes <https://bugs.gnu.org/29761>. Reported by Martin Castillo <castilma@uni-bremen.de>. * guix/scripts/gc.scm (argument->verify-options): New procedure. (%options) ["verify"]: Adjust to use it. * tests/guix-gc.sh: Add test.
2017-12-18gnu: emacspeak: Update to 47.0.Kei Kebreau
* gnu/packages/emacs.scm (emacspeak): Update to 47.0. [source]: Remove snippet. [arguments]: Set SHELL environment variable.
2017-12-18gnu: rsync: Patch CVE-2017-{16548,17433,17434}.Efraim Flashner
* gnu/packages/rsync.scm (rsync)[source]: Add patches. [properties]: Mark CVE-2017-15994 as not relevant. * gnu/packages/patches/rsync-CVE-2017-16548.patch, gnu/packages/patches/rsync-CVE-2017-17433.patch, gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2017-12-18gnu: psm: Update home page URL.Ludovic Courtès
* gnu/packages/linux.scm (psm)[home-page]: Update. [source](uri): Use it.
2017-12-18gexp: 'computed-file' has a new #:guile parameter.Ludovic Courtès
* guix/gexp.scm (<computed-file>)[guile]: New field. (computed-file): Add #:guile. (computed-file-compiler): Honor 'guile'.
2017-12-18gnu: Fix ambiguous 'zip' reference.Ludovic Courtès
* gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1).
2017-12-18ui: Non-zero exit for compound '&message' and '&error-location' conditions.Ludovic Courtès
* guix/ui.scm (call-with-error-handling): When both 'message?' and 'error-location?' are true, add call to 'exit'.
2017-12-18system: examples: Add a template for BeagleBone Black.Mathieu Othacehe
* gnu/system/examples/beaglebone-black.tmpl: New file. * Makefile.am (EXAMPLES): Add it. * gnu/system/install.scm (/etc/configuration-files): Add it.
2017-12-18gnu: claws-mail: Update to 3.16.0.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (claws-mail): Update to 3.16.0.
2017-12-18services: nginx: Allow to add raw content to the server blocks.Clément Lassieur
* doc/guix.texi (Web Services): Document 'raw-content'. * gnu/services/web.scm (<nginx-server-configuration>)[raw-content]: New field. (emit-nginx-server-config): Add it.
2017-12-18services: nginx: Replace 'http-port' and 'https-port' with 'listen'.Clément Lassieur
* doc/guix.texi (Web Services, Version Control Services): Update accordingly. * gnu/services/certbot.scm (certbot-nginx-server-configurations): Likewise. * gnu/services/version-control.scm (%cgit-configuration-nginx): Likewise. * gnu/services/web.scm (<nginx-server-configuration>, emit-nginx-server-config): Likewise. * gnu/tests/version-control.scm (%cgit-configuration-nginx, %git-nginx-configuration): Likewise. * gnu/tests/web.scm (%nginx-servers, %php-fpm-nginx-server-blocks): Likewise.
2017-12-18gnu: r-seurat: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0. [propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica, r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr, r-rcppeigen, r-fastica.
2017-12-18gnu: Add r-diffusionmap.Ricardo Wurmus
* gnu/packages/graph.scm (r-diffusionmap): New variable.
2017-12-18gnu: Add r-ggjoy.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggjoy): New variable.
2017-12-18gnu: Add r-ggridges.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggridges): New variable.
2017-12-18gnu: Add r-scatterplot3d.Ricardo Wurmus
* gnu/packages/cran.scm (r-scatterplot3d): New variable.
2017-12-18gnu: Add r-sdmtools.Ricardo Wurmus
* gnu/packages/cran.scm (r-sdmtools): New variable.
2017-12-18gnu: Add r-dtw.Ricardo Wurmus
* gnu/packages/cran.scm (r-dtw): New variable.
2017-12-18gnu: Add r-ica.Ricardo Wurmus
* gnu/packages/cran.scm (r-ica): New variable.
2017-12-18gnu: r-seurat: Fix ModularityOptimizer.jar.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class attribute in manifest.
2017-12-18gnu: qmidiarp: Update to 0.6.5.Ricardo Wurmus
* gnu/packages/music.scm (qmidiarp): Update to 0.6.5.
2017-12-18gnu: Add noise-repellent.Ricardo Wurmus
* gnu/packages/audio.scm (noise-repellent): New variable.
2017-12-18gnu: Add aj-snapshot.Ricardo Wurmus
* gnu/packages/music.scm (aj-snapshot): New variable.
2017-12-18gnu: Add jack-capture.Ricardo Wurmus
* gnu/packages/music.scm (jack-capture): New variable.
2017-12-18gnu: Add qjackrcd.Ricardo Wurmus
* gnu/packages/audio.scm (qjackrcd): New variable.
2017-12-18gnu: Add whysynth.Ricardo Wurmus
* gnu/packages/music.scm (whysynth): New variable.
2017-12-18gnu: Add sonivox-eas.Ricardo Wurmus
* gnu/packages/music.scm (sonivox-eas): New variable.
2017-12-18doc: Fix typo.Martin Castillo
* doc/guix.texi: remove double occurence of generations. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-18nls: Update 'hu' translation.Ludovic Courtès
2017-12-18vm: Pass the host's /dev/urandom to the guest at /dev/hwrng.Leo Famulari
* gnu/build/vm.scm (load-in-linux-vm): Use QEMU's virtio-rng-pci. * gnu/system/vm.scm (common-qemu-options): Likewise.
2017-12-17gnu: openssl: Update replacement to 1.0.2n [fixes CVE-2017-{3737,3738}].Mark H Weaver
* gnu/packages/tls.scm (openssl)[replacement]: Use openssl-1.0.2n. (openssl-1.0.2m): Replace with ... (openssl-1.0.2n): ... this updated version. Update comment.
2017-12-17gnu: Add mod-wsgi.Christopher Baines
* gnu/packages/web.scm (mod-wsgi): New variable.
2017-12-17gnu: system: vm: Use loose cache for 9p file system.Christopher Baines
This improves the performance of the shared store for operations involving lots of files, e.g. searching through the store. * gnu/system/vm.scm (mapping->file-system): Add cache=loose to options.
2017-12-17gnu: grammalecte: Fix 'license' field.Ludovic Courtès
* gnu/packages/dictionaries.scm (grammalecte)[license]: Change name to 'gpl3+'.
2017-12-17man-db: Autoload (gdbm).Ludovic Courtès
Fixes 'guix pull'. Reported by ofosos on #guix. * guix/man-db.scm: Use 'module-autoload!' instead of 'module-use!'. so that (gdbm) is not loaded until we need it.
2017-12-17services: certbot: Fix certbot renewal job.Christopher Baines
Quote the list of hosts, to avoid generating a broken job definition. * gnu/services/certbot.scm (certbot-renewal-jobs): Quote the hosts when passing them in to the job gexp.
2017-12-17gnu: Add grammalecte.Nicolas Goaziou
* gnu/packages/dictionaries.scm (grammalecte): New variable.
2017-12-17gnu: gourmet: Fix runtime failure and enhance plugin.Mark Meyer
Fixes <https://bugs.gnu.org/29227>. Reported by Caleb Herbert <csh@bluehome.net>. * gnu/packages/nutrition.scm (gourmet)[inputs]: Add python-lxml. [arguments]: Custom install phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-17gnu-maintenance: 'latest-ftp-release' ignores "unstable" directories.Ludovic Courtès
* guix/gnu-maintenance.scm (latest-ftp-release): Filter out "unstable" directories.
2017-12-17gnu: pinentry-tty: Add meta-data for 'guix refresh'.Ludovic Courtès
* gnu/packages/gnupg.scm (pinentry-tty)[properties]: New field.
2017-12-17profiles: Use (guix man-db) to create the manual database.Ludovic Courtès
Fixes <https://bugs.gnu.org/29654>. Reported by Ruud van Asseldonk <dev+guix@veniogames.com>. This also speeds up database creation compared to "man-db --create" (less than half the time, on a warm cache, for 19k pages.) * guix/man-db.scm: New file. * Makefile.am (MODULES_NOT_COMPILED): Add it. * guix/profiles.scm (manual-database): Rewrite to use (guix man-db).
2017-12-17services: cleanup: Remove "/run/udev/watch.old" directory.Danny Milosavljevic
* gnu/services.scm (cleanup-gexp): Remove "/run/udev/watch.old" directory.
2017-12-17gnu: global: Update to 6.6.1 [fixes CVE-2017-17531].Efraim Flashner
* gnu/packages/code.scm (global): Update to 6.6.1.
2017-12-16gnu: python-dulwich: Update to 0.18.6 [fixes CVE-2017-16228].Leo Famulari
* gnu/packages/python.scm (python-dulwich, python2-dulwich): Update to 0.18.6.
2017-12-16gnu: krita: Enhance krita.Mark Meyer
* gnu/packages/kde.scm (krita)[inputs]: Add libjpeg-turbo, ilmbase and openexr. [native-inputs]: Add vc. [arguments]: Set path to headers for ilmbase. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
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