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2020-04-09gnu: Remove python2-scikit-image.Marius Bakke
Some of the packages that this depends upon no longer supports Python 2. * gnu/packages/python-science.scm (python2-scikit-image): Remove variable.
2020-04-09gnu: python-serpent: Declare python2 variant.Marius Bakke
* gnu/packages/python-xyz.scm (python-serpent)[properties]: New field. (python2-serpent): New public variable.
2020-04-09gnu: python-dask: Update to 2.14.0.Marius Bakke
* gnu/packages/python-xyz.scm (python-dask): Update to 2.14.0.
2020-04-09gnu: python-cloudpickle: Update to 1.3.0.Marius Bakke
* gnu/packages/python-xyz.scm (python-cloudpickle): Update to 1.3.0. [arguments]: Remove #:tests?. Add #:phases. [native-inputs]: Add PYTHON-PSUTIL. Remove PYTHON-MOCK. [properties]: New field. (python2-cloudpickle)[native-inputs]: New field. Preserve PYTHON2-MOCK. [propagated-inputs]: Add PYTHON2-FUTURES.
2020-04-09gnu: python-datrie: Update to 0.8.2Marius Bakke
* gnu/packages/python-xyz.scm (python-datrie): Update to 0.8.2.
2020-04-09gnu: minimap2: Fix cond expression for Guile 3 compatibility.Marius Bakke
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Make the last COND test the symbol else instead of _.
2020-04-09gnu: shellcheck: Update homepage.Jack Hill
* gnu/packages/haskell-apps.scm (shellcheck)[homepage]: Update URL. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2020-04-09gnu: mcomix: Update to 20200402.Pierre Neidhardt
* gnu/packages/image-viewers.scm (mcomix): Update to 20200402.
2020-04-09installer: Include empty variant in keyboard layout selection.Florian Pelz
Previously for Azerbaijani, no Latin layout but only the Cyrillic variant could be selected. * gnu/installer/newt/keymap.scm (add-empty-variant): New procedure. (run-keymap-page): Use it to insert an empty variant.
2020-04-09installer: Allow Alt+Shift toggle from non-Latin keyboard layouts.Florian Pelz
Fixes <https://bugs.gnu.org/40493>. * gnu/installer/newt/keymap.scm (%non-latin-layouts): New variable. (%non-latin-variants): New variable. (%latin-layout+variants): New variable. (toggleable-latin-layout): New procedure to compute combined layouts. (run-keymap-page): Use it. (keyboard-layout->configuration): Apply it in config.scm. (run-layout-page): Mention Alt+Shift. * gnu/installer/keymap.scm (kmscon-update-keymap): Pass on XKB options. * gnu/installer/record.scm (<installer>): Adjust code comments. * gnu/installer.scm (apply-keymap): Pass on XKB options. (installer-steps): Adjust code comments. * gnu/packages/patches/kmscon-runtime-keymap-switch.patch: Apply XKB options.
2020-04-08services/web: Fix ordering of default-nginx-config.Florian Pelz
Fixes an error message '"load_module" directive is specified too late'. * gnu/services/web.scm (default-nginx-config): Emit load_module before global directives.
2020-04-09gnu: cataclysm-dda: Update to 0.E.Nicolas Goaziou
* gnu/packages/games.scm (cataclysm-dda): Update to 0.E.
2020-04-08gnu: linux-libre: Update to 5.4.31.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.31. (linux-libre-5.4-pristine-source): Update hash.
2020-04-08gnu: linux-libre@5.6: Update to 5.6.3.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.3. (linux-libre-5.6-pristine-source): Update hash.
2020-04-08news: Add ‘de’ translation.Florian Pelz
* etc/news.scm: Add a ‘de’ translation.
2020-04-08download: Use correct system and guile in 'url-fetch/tarbomb' and ↵Diego Nicola Barbato
'url-fetch/zipbomb'. Fixes <https://bugs.gnu.org/40115>. Previously the result of `guix build -s $system $package' would depend on the system Guix was built for if $package or one of its dependencies used 'url-fetch/tarbomb' or 'url-fetch/zipbomb' as the origin method of its source (e.g. `guix build -s i686-linux ffmpeg' on i686-linux would build a different derivation than on x86_64-linux). This patch fixes this by explicitly passing the correct system and guile to 'gexp->derivation'. * guix/download.scm (url-fetch/tarbomb): Pass #:system system and #:guile-for-build guile to 'gexp->derivation', where guile is the derivation of guile for system. (url-fetch/zipbomb): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-08gnu: openntpd: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/ntp.scm (openntpd)[source]: Hard-code NAME.
2020-04-08gnu: et: Update home page.Tobias Geerinckx-Rice
* gnu/packages/ssh.scm (et)[home-page]: Update.
2020-04-08gnu: mosh: Tweak description.Tobias Geerinckx-Rice
* gnu/packages/ssh.scm (mosh)[description]: Use full sentences and note that only the client may roam.
2020-04-08gnu: Add chrony.Tobias Geerinckx-Rice
* gnu/packages/ntp.scm (chrony): New public variable.
2020-04-08doc: Mention HTTP/HTTPS proxy in the system installation instructions.Ludovic Courtès
* doc/guix.texi (Keyboard Layout and Networking and Partitioning): Mention 'herd set-http-proxy guix-daemon'.
2020-04-08tests: Mark VM images as non-substitutable.Ludovic Courtès
* gnu/tests/install.scm (run-install): Pass #:substitutable? to 'system-disk-image' and to 'gexp->derivation'.
2020-04-08vm: Allow images to be marked as non-substitutable.Ludovic Courtès
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Add #:substitutable? parameter. Pass it to 'gexp->derivation'. (qemu-image): Add #:substitutable? and pass it to 'expression->derivation-in-linux-vm'. (system-disk-image): Add #:substitutable? and pass it to 'qemu-image'.
2020-04-08gnu: genimage: Update to 11.Vincent Legoll
* gnu/packages/genimage.scm (genimage): Update to 11, [arguments]: add a new test dump file to the patched ones because of missing /etc/passwd in build environment. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-08installer: Add proxy support.Mathieu Othacehe
* gnu/installer/proxy.scm: New file. * gnu/local.mk (INSTALLER_MODULES): Add it. * po/guix/POTFILES.in: Add it. * gnu/installer/newt/parameters.scm (run-proxy-page): New procedure, (run-parameters-page): add the previous procedure to the parameters menu.
2020-04-08installer: Turn help menu into parameters menu.Mathieu Othacehe
* gnu/local.mk (INSTALLER_MODULES): Rename help.scm into parameters.scm. * po/guix/POTFILES.in: Ditto. * gnu/installer/record.scm (<installer>): Rename help-menu into parameter-menu and help-page into parameters-page. * gnu/installer/newt/parameters.scm: Renamed from help.scm. Update information messages. * gnu/installer/newt.scm: Update accordingly. * gnu/installer/newt/keymap.scm: Ditto.
2020-04-08gnu: higan: Update description.Nicolas Goaziou
* gnu/packages/emulators.scm (higan)[synopsis, description]: Update description.
2020-04-08gnu: higan: Update to 110.Nicolas Goaziou
* gnu/packages/emulators.scm (higan): Update to 110. [source]: Switch to new repository. [inputs]: Add libxrandr, replace sdl with sdl2. [home-page]: Use new URL. [license]: Switch license. * gnu/packages/patches/higan-remove-march-native-flag.patch: Delete file. * gnu/local.mk: Reflect patch removal.
2020-04-07gnu: Syncthing: Update to 1.4.1.Leo Famulari
* gnu/packages/syncthing.scm (syncthing): Update to 1.4.1.
2020-04-07gnu: Add go-github-com-calmh-murmur3.Leo Famulari
* gnu/packages/golang.scm (go-github-com-calmh-murmur3): New variable. (go-github-com-willf-bloom)[propagated-inputs]: Replace go-github-com-spaolacci-murmur3 with it. [arguments]: Patch the murmur3 import path in a new 'patch-import-path' phase.
2020-04-07gnu: Go: Update to 1.13.9.Leo Famulari
* gnu/packages/golang.scm (go-1.13): Update to 1.13.9.
2020-04-08maint: Cross-build GUILE-2.2/FIXED.Ludovic Courtès
* etc/release-manifest.scm (%packages-to-cross-build): Replace "guile@2.2" with GUILE-2.2/FIXED.
2020-04-08records: Have ABI check work well for cross-compilation.Ludovic Courtès
Reported by Jan (janneke) Nieuwenhuizen <janneke@gnu.org>. * guix/records.scm (define-record-type*): Use 'target-most-positive-fixnum' on Guile 3 instead of 'most-positive-fixnum'.
2020-04-08compile: Run the load phase within 'with-target'.Ludovic Courtès
* guix/build/compile.scm (compile-files)[build]: Remove 'with-target'. Wrap body in 'with-target'.
2020-04-08reconfigure: Correctly re-throw SRFI-34 exceptions on Guile 3.Ludovic Courtès
Previously, we'd just print an ugly backtrace when running on Guile 3 because the '%exception throw would not be caught anywhere. Reported by Arne Babenhauserheide <arne_bab@web.de> in <https://bugs.gnu.org/40496>. * guix/scripts/system/reconfigure.scm (install-bootloader-program): In 'catch' handler, match '%exception and use 'raise-exception' instead of 'throw' to rethrow in that case.
2020-04-07Revert "Allow double-click select of URL in status"Marius Bakke
As discussed on #guix, this should wait until 1.1.0 is branched off to avoid having to update translations. This reverts commit 9f1b787120b1b81abffaf0fa13fdbdf4cca39f2d.
2020-04-07Allow double-click select of URL in statusTomZ
Various places while downloading or compiling guix prints the source URL. This change makes the URL easier to use by placing a space between the URL and the trailing dots. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2020-04-07gnu: gnurl: Update to 7.69.1.Marius Bakke
* gnu/packages/gnunet.scm (gnurl): Update to 7.69.1. [source](uri): Switch to ".tar.gz" archive.
2020-04-07gnu: Add tap-lv2.Alexandros Theodotou
* gnu/packages/music.scm (tap-lv2): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-07gnu: icecat: Update to 68.7.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2020-6821, CVE-2020-6822, CVE-2020-6825, CVE-2020-6827, and CVE-2020-6828. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2020-04-07gnu: emacs-beancount: Do not inherit inputs from beancount.Marius Bakke
* gnu/packages/finance.scm (emacs-beancount)[inputs, native-inputs]: New fields.
2020-04-07gnu: beancount: pytest is a native input.Marius Bakke
* gnu/packages/finance.scm (beancount)[inputs]: Move PYTHON-PYTEST ... [native-inputs]: ... here.
2020-04-07gnu: beancount: Do not propagate inputs.Marius Bakke
* gnu/packages/finance.scm (beancount)[propagated-inputs]: Move everything from here ... [inputs]: ... to here.
2020-04-07gnu: emacs-beancount: Move to (gnu packages finance).Marius Bakke
This is a fixup for commit abcac7a52932bdf66c333659679b0a5e6169e34c, as inheritance across modules is not safe. Fixes <https://bugs.gnu.org/40488>. Reported by Christopher Baines <mail@cbaines.net>. * gnu/packages/emacs-xyz.scm (emacs-beancount): Move from here ... * gnu/packages/finance.scm: ... to here.
2020-04-07gnu: Add python-ipython-cluster-helper.Efraim Flashner
* gnu/packages/python-xyz.scm (python-ipython-cluster-helper): New variable.
2020-04-07gnu: Add python-ipyparallel.Efraim Flashner
* gnu/packages/python-xyz.scm (python-ipyparallel): New variable.
2020-04-07lint: 'm4' is a native input.Marius Bakke
* guix/lint.scm (check-inputs-should-be-native): Add "m4".
2020-04-07gnu: python-coveralls: Update to 1.11.1.Marius Bakke
* gnu/packages/python-check.scm (python-coveralls): Update to 1.11.1. [source]: Change to GIT-FETCH. [arguments]: New field. [propagated-inputs]: Remove PYTHON-SH and PYTHON-URLLIB3.
2020-04-07gnu: julia: Upgrade to 1.3.1.Nicolò Balzarotti
* gnu/packages/julia.scm (libuv-julia): Upgrade to 2.0.0-1.35b1504. (libunwind-julia): New variable. (llvm-patch): Rename to ... (julia-patch): ... this. Update to 1.3.1. (llvm-julia): Adjust patch-set based on above change. Adjust indent. (julia): Update to 1.3.1. [source]: Add patch. [arguments]: Adjust custom 'prepare-deps (llvm-patch): Rename to ... (julia-patch): ... this. Update to 1.3.1. (llvm-julia): Adjust patch-set based on above change. (julia): Upgrade to 1.3.1. [arguments]: Adjust custom 'prepare-deps phase based on changed inputs. Remove most of 'hardcode-soname-map. Adjust 'fix-include-and-link-paths. Add new 'fix-precompile phase. Adjust custom 'disable-broken-tests phase. Add new 'make-wrapper phase. Adjust make-flags. [inputs]: Add p7zip, mbedtls-apache, curl libssh2. Remove openspecfun, fftw, fftwf, python2-virtualenv, rmath. Replace libunwind with libunwind-julia, custom suitesparse with system suitesparse, custom dsfmt with system dsfmt. [native-search-paths]: Add JULIA_DEPOT_PATH. * gnu/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-07gnu: julia.scm: Fix indentaion.Efraim Flashner
* gnu/packages/julia.scm: Re-indent file.
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