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2022-12-11gnu: libhx: Update to 4.8.Tobias Geerinckx-Rice
* gnu/packages/c.scm (libhx): Update to 4.8.
2022-12-11gnu: libdeflate: Update to 1.15.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (libdeflate): Update to 1.15. [build-system]: Use CMake. [arguments]: Remove #:make-flags and all custom phases. Add equivalent #:configure-flags and a custom 'check phase.
2022-12-11gnu: python-aiounittest: Update to 1.4.2.Tobias Geerinckx-Rice
* gnu/packages/check.scm (python-aiounittest): Update to 1.4.2.
2022-12-11gnu: doctest: Update to 2.4.9.Tobias Geerinckx-Rice
* gnu/packages/check.scm (doctest): Update to 2.4.9.
2022-12-11gnu: ccache: Update to 4.7.4.Tobias Geerinckx-Rice
* gnu/packages/ccache.scm (ccache): Update to 4.7.4.
2022-12-11gnu: byacc: Update to 20221106.Tobias Geerinckx-Rice
* gnu/packages/c.scm (byacc): Update to 20221106.
2022-12-11gnu: fio: Update to 3.33.Tobias Geerinckx-Rice
* gnu/packages/benchmark.scm (fio): Update to 3.33.
2022-12-11gnu: libltc: Update to 1.3.2.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (libltc): Update to 1.3.2.
2022-12-11gnu: realmd: Update to 0.17.1.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (realmd): Update to 0.17.1.
2022-12-13gnu: emacs-pdf-tools: Update home page.Jelle Licht
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools)[home-page]: Update. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-13gnu: emacs-hyperbole: Add missing files.Konrad Hinsen
* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Add a new INSTALL-DOC phase. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-13gnu: emacs-pg: Update to 0.20.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-pg): Update to 0.20.
2022-12-13gnu: emacs-fountain-mode: Update to 3.6.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-fountain-mode): Update to 3.6.1.
2022-12-13gnu: emacs-debbugs: Update to 0.35.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.35.
2022-12-13gnu: emacs-project: Update to 0.9.3.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.9.3.
2022-12-13gnu: emacs-beancount: Update to 0.0.0-1.687775d.dan
* gnu/packages/finance.scm (emacs-beancount): Update to 0.0.0-1.687775d. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-13gnu: icecat: Update to 102.6.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2022-46872, CVE-2022-46874, CVE-2022-46875, CVE-2022-46878, CVE-2022-46880, CVE-2022-46881, and CVE-2022-46882. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.
2022-12-13gnu: bedops: Update to 2.4.41.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.41. [arguments]: Remove trailing #T from build phases; do not set BINDIR in make-flags; set CC; replace 'install phase. [native-inputs]: Add diffutils, perl, and which.
2022-12-13services: nix: Add more configuration fields.Petr Hodina
* gnu/services/nix.scm (<nix-configuration>)[build-directory]: New field. (nix-service-etc, nix-shepherd-service): Take them into account. * doc/guix.texi (Nix): Update it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-13ui: Take package upstream name into account when searching.Lars-Dominik Braun
* guix/ui.scm (%package-metrics): Add PACKAGE-UPSTREAM-NAME*. * tests/ui.scm ("package-relevance and upstream name"): New test. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-12-13packages: Add 'package-upstream-name*'.Lars-Dominik Braun
* guix/packages.scm (package-upstream-name*): New procedure. * tests/packages.scm ("package-upstream-name*"): New test. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-13gnu: guile-gnutls: Add properties for the 'generic-git' updater.Ludovic Courtès
* gnu/packages/tls.scm (guile-gnutls)[properties]: New field.
2022-12-13gnu: tophat: Remove trailing #T from build phases and snippet.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (tophat)[source]: Remove trailing #T from snippet. [arguments]: Remove trailing #T from build phases.
2022-12-13gnu: python-bx-python: Update to 0.9.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.9.0. [build-system]: Use pyproject-build-system. [arguments]: Add phase 'build-extensions and 'disable-cython-doctests. [native-inputs]: Replace python-nose with python-pytest.
2022-12-13gnu: bioawk: Use gexp.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bioawk)[arguments]: Use gexp and simplify 'install phase.
2022-12-13gnu: blasr-libcpp: Remove trailing #T from build phases.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (blasr-libcpp)[arguments]: Remove trailing #T from build phases.
2022-12-13gnu: pbbam: Drop input labels.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pbbam)[native-inputs]: Drop labels.
2022-12-13gnu: pbbam: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pbbam): Update to 2.1.0.
2022-12-13gnu: pbcopper: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pbcopper): Update to 2.0.0.
2022-12-13gnu: bedtools: Remove unnecessary quasiquotation.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Remove quasiquote. [native-inputs]: Drop input label.
2022-12-13gnu: bamutils: Update to 1.0.15.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bamutils): Update to 1.0.15. [arguments]: Remove quasiquoting; remove USER_WARNINGS from make-flags. [native-inputs]: Update libstatgen.
2022-12-13gnu: bamtools: Update to 2.5.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bamtools): Update to 2.5.2. [arguments]: Enable tests; remove extra phases. [inputs]: Add jsoncpp. [native-inputs]: Add pkg-config.
2022-12-13gnu: aragorn: Update to 1.2.41.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.41. [source]: Fetch C source file from new location. [arguments]: Drop trailing #T in build phases; use gexp. [native-inputs]: Add origin for man page. [home-page]: Update to new home page. [license]: Update to GPLv3+.
2022-12-13gnu: Add rpi-imager.Maxim Cournoyer
* gnu/packages/raspberry-pi.scm (rpi-imager): New variable.
2022-12-13gnu: mercury: Update to 22.01.4.jgart
* gnu/packages/mercury.scm (mercury-minimal): Update to 22.01.4. [arguments]: Remove obsolete and non-existent file from being patched. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13gnu: mercury-minimal: Update to 22.01.4.jgart
* gnu/packages/mercury.scm (mercury-minimal): Update to 22.01.4. [arguments]: Remove obsolete file path, update libatomic-ops, and update libgc-8. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13gnu: python-h5netcdf: Update to 1.1.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-h5netcdf): Update to 1.1.0. [build-system]: Use pyproject-build-system, to simplify package. [description]: Style content and add links to referenced projects. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13gnu: python-asdf-astropy: Update to 0.3.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.3.0. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13gnu: Add tmux-plugin-resurrect.EuAndreh
* gnu/packages/tmux.scm (tmux-plugin-resurrect): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13gnu: Add rust-csv-index-0.1.Paul A. Patience
* gnu/packages/crates-io.scm (rust-csv-index-0.1): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13gnu: nheko: Support video calls.Martin Schmidt
* gnu/packages/messaging.scm (nheko)[inputs]: Replace GST-PLUGINS-GOOD with GST-PLUGINS-GOOD-QT to fix video calls. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13gnu: Add gst-plugins-good-qt.Martin Schmidt
* gnu/packages/gstreamer.scm (gst-plugins-good-qt): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13gnu: guix-data-service: Update to 0.0.1-36.7b69611.Christopher Baines
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-36.7b69611.
2022-12-13gnu: kaldi: Update to 0-1.be22248.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi): Update to 0-1.be22248.
2022-12-13gnu: kaldi: Remove trailing #T from build phases.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi)[arguments]: Remove trailing #T from build phases.
2022-12-13gnu: kaldi-gstreamer-server: Update to 0-3.f79e204.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): Update to 0-3.f79e204.
2022-12-13gnu: kaldi-gstreamer-server: Drop input labels.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Drop package labels.
2022-12-13gnu: kaldi-gstreamer-server: Remove trailing #T from build phases.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]: Remove trailing #T from build phases.
2022-12-13gnu: gst-kaldi-nnet2-online: Update to 0-3.7888ae5.Ricardo Wurmus
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to 0-3.7888ae5. [arguments]: Do to quote list; remove trailing #T from build phases; augment CPLUS_INCLUDE_PATH instead of replacing it. [inputs]: Replace openfst with openfst-1.7.3.
2022-12-13gnu: sbcl-alloy: Update to 20221126.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-alloy): Update to 20221126.
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