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2017-08-03gnu: r-readr: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03gnu: r-withr: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03gnu: r-git2r: Update to 0.19.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03gnu: r-checkmate: Update to 1.8.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
2017-08-03gnu: r-backports: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
2017-08-03gnu: r-formula: Update to 1.2-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
2017-08-03gnu: r-r6: Update to 2.2.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
2017-08-03gnu: r-knitr: Update to 1.16.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
2017-08-03gnu: r-formatr: Update to 1.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
2017-08-03gnu: r-evaluate: Update to 0.10.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
2017-08-03gnu: r-dbi: Update to 0.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
2017-08-03gnu: r-bit64: Update to 0.9-7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
2017-08-03gnu: r-mgcv: Update to 1.8-18.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
2017-08-03gnu: r-matrix: Update to 1.2-10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
2017-08-03gnu: r-foreign: Update to 0.8-69.Ricardo Wurmus
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
2017-08-03gnu: r-boot: Update to 1.3-20.Ricardo Wurmus
* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
2017-08-03gnu: r-curl: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/web.scm (r-curl): Update to 2.8.1.
2017-08-03gnu: r-htmlwidgets: Update to 0.9.Ricardo Wurmus
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.9.
2017-08-03gnu: r-htmltools: Update to 0.3.6.Ricardo Wurmus
* gnu/packages/web.scm (r-htmltools): Update to 0.3.6.
2017-08-03gnu: r-servr: Update to 0.6.Ricardo Wurmus
* gnu/packages/web.scm (r-servr): Update to 0.6.
2017-08-03gnu: r-jsonlite: Update to 1.5.Ricardo Wurmus
* gnu/packages/web.scm (r-jsonlite): Update to 1.5.
2017-08-03gnu: r-httpuv: Update to 1.3.5.Ricardo Wurmus
* gnu/packages/web.scm (r-httpuv): Update to 1.3.5.
2017-08-03gnu: r-pracma: Update to 2.0.7.Ricardo Wurmus
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03gnu: r-knitrbootstrap: Update to 1.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
2017-08-03gnu: r-ranger: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0. [propagated-inputs]: Add r-matrix and r-rcppeigen.
2017-08-03gnu: r-hmisc: Update to 4.0-3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3. [propagated-inputs]: Remove r-base64.
2017-08-03gnu: r-plotly: Update to 4.7.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1. [propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and r-rcolorbrewer.
2017-08-03gnu: r-igraph: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2. [propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
2017-08-03gnu: r-purrr: Update to 0.2.2.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2. [propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
2017-08-03gnu: r-devtools: Update to 1.13.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3. [propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and r-rversions.
2017-08-03gnu: r-tibble: Update to 1.3.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3. [propagated-inputs]: Remove r-lazyeval, add r-rlang.
2017-08-03gnu: r-dplyr: Update to 0.7.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2. [propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue, r-pkgconfig, r-bindrcpp.
2017-08-03gnu: Add r-bindrcpp.Ricardo Wurmus
* gnu/packages/cran.scm (r-bindrcpp): New variable.
2017-08-03gnu: Add r-bindr.Ricardo Wurmus
* gnu/packages/cran.scm (r-bindr): New variable.
2017-08-03gnu: r-rcpp: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpp): Move from here... * gnu/packages/cran.scm (r-rcpp): ...to here.
2017-08-03gnu: r-rcpp: Update to 0.12.12.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
2017-08-03gnu: r-plogr: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/statistics.scm (r-plogr): Move from here... * gnu/packages/cran.scm (r-plogr): ...to here.
2017-08-03gnu: Add r-glue.Ricardo Wurmus
* gnu/packages/cran.scm (r-glue): New variable.
2017-08-03gnu: Add grub-hybrid.Danny Milosavljevic
* gnu/packages/bootloaders.scm (grub-hybrid): New variable.
2017-08-03gnu: htseq: Use PyPI URI.Ben Woodcroft
This is a follow-up to 92971d68ac942cd4a38092b4ccb20a8192a56aaf. * gnu/packages/bioinformatics.scm (htseq)[source]: Use 'pypi-uri'.
2017-08-03gnu: htseq: Update to 0.9.1.Ben Woodcroft
* gnu/packages/bioinformatics.scm (htseq): Update to 0.9.1. [arguments]: Use python-3 by removing field. [native-inputs]: Add 'python-cython'. [propagated-inputs]: Use python3 numpy package. [inputs]: Use python3 pysam package. Add 'python-matplotlib'. (python2-htseq): New variable. (clipper)[inputs]: Use it.
2017-08-03gnu: vc: Limit to x86_64 and i686.Efraim Flashner
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03gnu: openscenegraph: Add 'Release' configure flag.Manolis Ragkousis
* gnu/packages/graphics.scm (openscenegraph)[arguments]: Add "-DCMAKE_BUILD_TYPE=Release".
2017-08-03gnu: Add LeoCAD.Eric Bavier
* gnu/packages/lego.scm (leocad): New variable.
2017-08-03gnu: youtube-dl: Update to 2017.07.30.1.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.30.1.
2017-08-03gnu: tor: Update to 0.3.0.10.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (tor): Update to 0.3.0.10.
2017-08-03activation: Make sure /etc exists.Ludovic Courtès
Fixes <http://bugs.gnu.org/27146>. Reported by ng0 <ng0@pragmatique.xyz>. * gnu/build/activation.scm (activate-etc): Add call to 'mkdir-p'.
2017-08-03doc: 'patches' field of <origin> can list file-like objects.Ludovic Courtès
Fixes <http://bugs.gnu.org/27165>. Reported by sirgazil <sirgazil@zoho.com>. * doc/guix.texi (origin Reference): 'patches' can contain file-like objects.
2017-08-02gnu: glibc@2.22: Fix security issues.Efraim Flashner
Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}. * gnu/packages/base.scm (glibc@2.22)[source]: Add patches. * gnu/packages/patches/glibc-CVE-2015-7547.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.Efraim Flashner
* gnu/packages/base.scm (glibc@2.23)[source]: Add patches. * gnu/packages/patches/glibc-CVE-2016-3075.patch, gnu/packages/patches/glibc-CVE-2016-3706.patch, gnu/packages/patches/glibc-CVE-2016-4429.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
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