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2016-11-15gnu: vdirsyncer: Fix build by setting correct PYTHONPATH.Hartmut Goebel
For thus, use add-installed-pythonpath. * gnu/packages/dav.scm (vdirsyncer): set PYTHONPATH using add-installed-pythonpath.
2016-11-15gnu: python-ipython: Fix build.Hartmut Goebel
* gnu/packages/python.scm (python-ipython, python2-ipython) [check, install-doc] set PYTHONPATH prior to running tests.
2016-11-15gnu: python-scipy: Fix build.Hartmut Goebel
* gnu/packages/python.scm (python-scipy) Use add-installed-pythonpath. Add dummy newlines character to string to make emacs happy.
2016-11-15gnu: python-matplotlib: Fix build.Hartmut Goebel
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Correct inputs. [install-doc] set PYTHONPATH prior to building docs.
2016-11-15gnu: python-numpy-bootstrap, python-numpy: Fix build.Hartmut Goebel
* gnu/packages/python.scm (python-numpy-bootstrap): Correct inputs, use modify-phases, add dummy newlines character to string to make emacs happy, set PYTHONPATH prior to running tests. (python-numpy): propagate inputs, set PYTHONPATH prior to building docs.
2016-11-15gnu: python-fonttools: Remove intervening directory in site-packges.Hartmut Goebel
* gnu/packages/python.scm (python-fonttools): Add phase patch-setuppy.
2016-11-15gnu: python2-pysnptools: Correct inputs.Hartmut Goebel
dateutil, pytz, and six do not occur in the code. Remove python-dateutil, python-pytz, python-six from inputs; Move python-cython to native-inputs; move python-pandas to propagated-inputs.
2016-11-15gnu: python-zope-testing: Remove needless input.Hartmut Goebel
* gnu/packages.python.scm (python-zope-testing): Remove python-zope-interface from native-imports.
2016-11-15gnu: python-zope-schema: Add missing inputs.Hartmut Goebel
* gnu/packages.python.scm (python-zope-schema): Add python-coverage and python-nose to native-inputs.
2016-11-15gnu: python-pytest-flakes: Fix build.Hartmut Goebel
* python.scm (python-pytest-flakes): Set PYTHONPATH prior to running tests.
2016-11-15gnu: python-pillow: Fix build.Hartmut Goebel
* gnu/packages/python.scm (python-pillow)[check-installed]: Add installed site-package to PYTHONPATH.
2016-11-15gnu: python-singledispatch: correct inputs.Hartmut Goebel
python-six is only required for conversion, not at run-time * gnu/packages/python.scm (python-singledispatch, python2-singledispatch): [inputs] Move python-six to [native-inputs].
2016-11-15gnu: python-pbr: Rework bootstrapping.Hartmut Goebel
For breaking the cyclic build, formerly a separate (older) version was used for bootstrapping. Now we use the same version just without tests and without test dependencies. * gnu/packages/python.scm (python-pbr-0.11, python2-pbr-0.11): replace by … (python-pbr-minimal, python2-pbr-minimal). (python-pbr) inherit from python-pbr-minimal, adding the requirements for testing and building the documentation. (python-fixtures) [native-inputs] Use python-pbr-minimal here. (python-testrepository): [native-inputs] Add it here, it was a missing dependency.
2016-11-15gnu: python-testrepositoryfixture: Correct inputs.Hartmut Goebel
python-fixtures is required only for building. * gnu/packages/python.scm (python-testrepository) [propagated-inputs] move python-fixtures to [native-inputs].
2016-11-15gnu: python-fixture: Enable tests.Hartmut Goebel
* gnu/packages/python.scm (python-fixtures) [arguments] remove keyword `#:tests?`.
2016-11-15gnu: python-fixture: Correct inputs.Hartmut Goebel
python-pbr is required only for building. * gnu/packages/python.scm (python-fixtures) [propagated-inputs] move python-pbr-0.11 to [native-inputs].
2016-11-15gnu: python-hdf5: Correct inputs.Hartmut Goebel
According to setup.py python-six is requried at run-time, thus has to be a propagated input. * gnu/packages/python.scm (python-hdf5) [inputs]: Move `python-six` to [propagated-inputs].
2016-11-15gnu: python-h5py: Remove needless "python2-variant" property.Hartmut Goebel
* gnu/packages/python.scm (python-h5py) [python2-variant]: Remove property. (python2-h5py): Don't strip property "strip-python2-variant".
2016-11-15gnu: python-ccm: Update synopsis and description.Hartmut Goebel
* gnu/packages/python.scm (python-ccm): Update synopsis and description.
2016-11-15gnu: python-ccm: Add missing input python-psutil.Hartmut Goebel
* gnu/packages/python.scm (python-ccm) [propagated-inouts]: Add python-psutil.
2016-11-15gnu: python-sphinx-rtd-theme: Remove inputs.Hartmut Goebel
This package is a plugin for python-sphinx, it does not require python-sphinx nor docutils, but is an add-on for python-sphinx and should not be installed by it's own. * gnu/packages/python/.scm (python-sphinx-rtd-theme)[inputs]: Remove.
2016-11-15gnu: python-pytest-cov: Use upstream options for testing.Hartmut Goebel
* gnu/packages/python.scm (python-pytest-cov): Replace phase "check" by one passing the options found in upstream's tox.ini-file to "python setup.py check".
2016-11-15gnu: scons: Do not use setuptools for building.Hartmut Goebel
* gnu/packages/python.scm (scons): Set "#:use-setuptools" to #f.
2016-11-15gnu: Fix python inputs, part 7: Ensure python-cython is a native-input.Hartmut Goebel
* gnu/packages/audio.scm (python-pyliblo): [inputs] Move python-cyton to [native-inputs]. * gnu/packages/bioinformatics.scm (python2-pybedtools): dito. * gnu/packages/music.scm (beast, python-pyportmidi): dito. * gnu/packages/python.scm (python2-fastlmm, python-kivy): dito.
2016-11-15gnu: Fix python inputs, part 6: some inputs become native-inputs.Hartmut Goebel
This patch handles the inputs which are native-inputs almost always like nose, sphinx, and pytest. * gnu/packages/python.scm (python-jsonschema, python-numpydoc, python-mccabe, python-mistune, python-ptyprocess, python-webob, python-apipkg, python-flake8-2.2.4)[inputs] change to [native-inputs]. (python-flake8, tox) Likewise, add a comment. (python-scikit-learn, python-numpy)[native-inputs] New element, move python-nose here. (python2-kombu)[inputs] change to [native-inputs], use python-kombu's package-native-inputs.
2016-11-15gnu: Fix python inputs, part 5: some inputs become propagated-inputsHartmut Goebel
* gnu/packages/openstack.scm (python-os-client-config)[inputs] change to [native-inputs]. [propagated-inputs]: New element, move python-appdirs, python-pyyaml here. (python-git-review)[propagated-inputs]: New element, move python-requests here. * gnu/packages/python.scm (python-rpy2)[propagated-inputs]: New element, move python-six here. (python-xcffib)[inputs] move python-six to [propagated-inputs]. (python-flake8)[propagated-inputs]: New element, move python-pep8, python-pyflakes, python-mccabe here. (python-flake8-2.2.4)[propagated-inputs]: New element, move python-pep8, python-pyflakes, python-mccabe here. (python-pytest)[propagated-inputs]: New element, move python-py here. (python-tox)[propagated-inputs]: New element, move all inputs except of python-pytest here. (python-botocore)[propagated-inputs]: New element, move python-dateutil, python-docutils, python-jmespath here. (awscli)[propagated-inputs]: New element, move python-colorama, python-botocore, python-s3transfer, python-docutils, python-rsa here. (python-mako)[propagated-inputs]: New element, move python-markupsafe here. * gnu/packages/qemu.scm(python-libvirt)[propagated-inputs]: New element, move python-lxml here.
2016-11-15gnu: Fix python inputs, part 3: all native-inputs become propagated-inputs.Hartmut Goebel
This patch contains the changes in python.scm where all [native-inputs] are changed to [propagated-inputs]. * gnu/packages/python.scm.scm (python-feedgenerator): All [native-inputs] are changed to [propagated-inputs].
2016-11-15gnu: Fix python inputs, part 2: all inputs become native-inputs.Hartmut Goebel
This patch contains the changes where all [inputs] are changed to [native-inputs]. * gnu/packages/python.scm (python-pytest, python-fixtures, python-testrepository, python-virtualenv): All [inputs] are changed to [native-inputs]. * gnu/packages/openstack.scm (python-bandit, python-debtcollector, python-hacking, python-tempest-lib, python-oslo.config, python-oslo.context, python-oslo.i18n, python-oslo.log, python-oslo.serialization, python-oslosphinx, python-oslotest, python-oslo.utils): Likewise.
2016-11-15gnu: Fix python inputs, part 1: all inputs become propagated-inputs.Hartmut Goebel
This patch contains the changes where all [inputs] are changed to [propagated-inputs] * gnu/packages/python.scm (python-passlib, python-paramiko, python-ccm, python-babel, python-keyring python-pandas, python-tzlocal, python-parse-type, python-nose2, python-pytest, python-pytest-mock, python-pytest-xdist, python-scripttest, python-testtools, python-pytest-cov, python-testscenarios, python-pbr-0.11, python-oauthlib, python-jinja2, python-sphinx, python-tzlocal, python-bugz, python2-pytest-mock, behave, pelican, sqlalchemy-utils, python-pygridtools, python-urwidtrees, python-tornado, python2-tornado, python-debian, python-execnet, python-pytest-cache, pytest-localserver, python-clint, python-rply, python-hy, python-rauth, python-rsa, python-celery, python-vobject, s3cmd, python-prompt-toolkit, ptpython, python-requests-oauthlib, python-stem, python-binaryornot, python2-binaryornot, python-nltk, python-pymongo, python-schematics, python-url, python2-url, python-freezegun, python-glances, python-graphql-core, python-graphql-relay, python-graphene, python-nautilus, python-s3transfer): All [inputs] become [propagated-inputs]. * gnu/packages/bioinformatics.scm (python-biopython): Likewise. * gnu/packages/django.scm (pytest-django): Likewise. * gnu/packages/mail.scm (python-mailmanclient): Likewise. * gnu/packages/password-utils.scm (python-bcrypt): Likewise. * gnu/packages/propbuf.scm (python-protobuf): Likewise. * gnu/packages/rdf.scm (python-rdflib): Likewise. SQACH all become propagated
2016-11-15gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).Hartmut Goebel
Bug 20765 is solved since we build all Python packages using option "--single-version-externally-managed". * gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove configure-flags. (pepr): remove phase "disable-egg-generation". * gnu/packages/pdf.scm (reportlab): Remove configure-flags. * gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl, python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove configure-flags. (python-pillow) remove phase "disable-egg-generation". (python-libarchive-c) Remove patching setup.cfg. * gnu/packages/statistics.scm (python-patsy): remove phase "prevent-generation-of-egg-archive". * gnu/packages/tls.scm (python-acme): remove phase "disable-egg-compression". * gnu/packages/tor.scm (onionshare): Remove configure-flags.
2016-11-15gnu: Remove needless inputs python-pip and python2-pip.Hartmut Goebel
This is installed together with Python 3 anyway and for our build of Python 2. * gnu/packages/python.scm (python2-fixtures): [inputs] remove "python-pip". * gnu/packages/pdf.scm (python2-reportlab): [native-inputs] remove "python2-pip". (python-reportlab)[properties]: remove "python2-variant".
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 4b)Hartmut Goebel
This patch contains the changes in python.scm where setuptools are used in an inherited package and removing this input also removes the need for inheriting the package. This is the case if adding setuptools in the inherited packge was the only change. Change this to not inherit and remove the new needless call to "strip-python2-variant (where applicable). * gnu/packages/python.scm.scm: Remove inheriting Python 2 packages inheriting from a Python 3 package if adding python-setuptools respective python2-setuptools to [inputs], [native-inputs] and [propagated-inputs] have been the sole reason for inheriting. Remove now needless [properties] "python2-variant" where applicable. (python2-lockfile, python2-keyring, python2-dateutil-2, python2-parsedatetime, python2-pandas, python2-pyicu, python2-pytest-cov, python2-pytest-runner, python2-pytest-xdist, python2-cov-core, python2-itsdangerous, python2-numexpr, python2-q, python2-sqlalchemy-utils, python2-alembic, python2-beautifulsoup4, python2-msgpack, python2-ipaddress, python2-atomicwrites, python2-apipkg, python2-execnet, python2-pytest-cache, python2-wtforms, python2-mako, python2-waitress, python2-wsgiproxy2, python2-pyquery, python2-webtest, python2-translitcodec, python2-editor, python2-sphinxcontrib-programoutput, python2-psycopg2, python2-vobject, python2-flask, python2-cookies, python2-responses, python2-future, python2-ply, python2-wcwidth, python2-prompt-toolkit, python2-jedi, python2-requests-oauthlib, python2-pyserial, python2-nltk, python2-pymongo, python2-sh, python2-schematics, python2-publicsuffix, python2-publicsuffix2, python2-url, python2-freezegun, python2-cachecontrol, python2-lit, python2-pytest-pep8, python2-pytest-flakes, python2-glances, python2-betamax, python2-file, python2-flask-babel, python2-furl, python2-imagesize python2-orderedmultidict, python2-pycodestyle, python2-vcversioner, python2-graphql-core, python2-graphql-relay, python2-validictory): Remove neesless input "python2-setuptools", don't inherit, don't call strip-python2-variant. (python-lockfile, python-keyring, python-dateutil-2, python-parsedatetime, python-pandas, python-pyicu, python-pytest-cov, python-pytest-runner, python-pytest-xdist, python-cov-core, python-itsdangerous, python-numexpr, python-q, python-sqlalchemy-utils, python-alembic, python-beautifulsoup4, python-msgpack, python-ipaddress, python-atomicwrites, python-apipkg, python-execnet, python-pytest-cache, python-wtforms, python-mako, python-waitress, python-wsgiproxy2, python-pyquery, python-webtest, python-translitcodec, python-editor, python-sphinxcontrib-programoutput, python-psycopg2, python-vobject, python-flask, python-cookies, python-responses, python-future, python-ply, python-wcwidth, python-prompt-toolkit, python-jedi, python-requests-oauthlib, python-pyserial, python-nltk, python-pymongo, python-sh, python-schematics, python-nltk, python-publicsuffix2, python-cachecontrol, python-lit, python-pytest-pep8, python-pytest-flakes, python-glances, python-betamax, python-file, python-flask-babel, python-furl, python-imagesize, python-orderedmultidict, python-pycodestyle, python-vcversioner, python-graphql-core, python-graphql-relay, python-validictory): Remove "python2-variant" property.
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)Hartmut Goebel
This patch contains the changes for all modules beside python.scm where setuptools are used in an inherited package and removing this input also removes the need for inheriting the package. This is the case if adding setuptools in the inherited package was the only change. Change this to not inherit and remove the new needless call to "strip-python2-variant (if applicable). * gnu/packages/bioinformatics.scm (python-biopython, python2-biopython, python-twobitreader, python2-twobitreader, python-plastid, python2-plastid, python2-pybigwig, python2-screed, sra-tools): No longer "inherit" Python 2 packages inheriting from a Python 3 package if the sole reason for inheriting was adding python-setuptools respective python2-setuptools to [inputs], [native-inputs] or [propagated-inputs]. Remove now needless [properties] "python2-variant" where applicable. * gnu/packages/django.scm (python-pytest-django, python2-pytest-django, python-django-filter, python2-django-filter): Likewise. * gnu/packages/gnupg.scm (python2-pygpgme): Likewise. * gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient): Likewise. * gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise. * gnu/packages/music.scm (python-pylast, python2-pylast): Likewise. * gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock, python2-git-review): Likewise. * gnu/packages/password-utils.scm (python2-bcrypt): Likewise. * gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise. * gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise. * gnu/packages/web.scm (python2-feedparser): Likewise.
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)Hartmut Goebel
This patch contains the changes where setuptools are used in an inherited package and removing this input keeps the need for inheriting the package. * gnu/packages/bioinformatics.scm (python2-biom-format): Remove python-setuptools respective python2-setuptools from [inputs], [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from a Python 3 package. * gnu/packages/python.scm (python2-pytest-mock, python2-oauthlib, python2-seaborn, python2-tornado, python2-terminado, python2-rauth, python2-anyjson, python2-amqp, python2-kombu, python2-billiard, python2-celery, python2-jellyfish, python2-binaryornot, python2-natsort, python2-graphene): Likewise. * gnu/packages/statistics.scm (python2-statsmodels): Likewise.
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 2)Hartmut Goebel
This patch contains the changes where removing setuptools from the inputs affected some code-lines beside. * gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and [propagated-inputs] where python-setuptools or python2-setuptools are the sole entries. Remove python-setuptools and python2-setuptools listed on a line by its own from [inputs], [native-inputs] and [propagated-inputs]. * gnu/packages/backup.scm (duplicity): Likewise. * gnu/packages/bioinformatics.scm (bamm, python2-pybedtools, python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper, crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm, pbtranscript-tofu, seqmagick): Likewise. * gnu/packages/docbook.scm (dblatex): Likewise. * gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise. * gnu/packages/lirc.scm (python2-lirc): Likewise. * gnu/packages/mp3.scm (eyed3): Likewise. * gnu/packages/nutrition.scm (gourmet): Likewise. * gnu/packages/openstack.scm (python-hacking, python2-hacking, python-os-testr, python2-os-testr, python-stevedore, python2-stevedore, python-tempest-lib, python2-tempest-lib, python-oslo.log, python2-oslo.log, python-keystoneclient, python2-keystoneclient): Likewise. * gnu/packages/password-utils.scm (assword): Likewise. * gnu/packages/python.scm (python-passlib, python2-passlib, python-babel, python2-babel, python-parse-type, python-pytest, python2-pytest, python-scripttest, python2-scripttest, python-testtools, python2-testtools, python-testscenarios, python2-testscenarios, python-subunit, python2-subunit, python-pbr-0.11, python-pbr, python2-pbr, python-testrepository, python2-testrepository, behave, python-wheel, python2-wheel, python-requests, python2-requests, python-jsonschema, python2-jsonschema, python-pyjwt, python2-pyjwt, python-virtualenv, python2-virtualenv, python-jinja2, python2-jinja2, python-joblib, python2-joblib, python-sphinx, python2-sphinx, python-feedgenerator, python2-feedgenerator, python-scikit-image, python2-scikit-image, python-redis, python2-redis, python2-fastlmm, python-numpydoc, python2-numpydoc, python-matplotlib, python2-matplotlib, python2-pysnptools, python-rpy2, python2-rpy2, python-pillow, python2-pillow, python-pycparser, python2-pycparser, python-cffi, python2-cffi, python-cairocffi, python2-cairocffi, python-drmaa, python2-drmaa, python-pathpy, python2-pathpy, python-simplegeneric, python2-simplegeneric, python-ipython, python2-ipython, python-apsw, python2-apsw, python-lxml, python2-lxml, python-networkx, python2-networkx, python-pyzmq, python2-pyzmq, python-mccabe, python2-mccabe, python-mccabe-0.2.1, python-flake8, python2-flake8, python-flake8-2.2.4, python-mistune, python2-mistune, python-ptyprocess, python2-ptyprocess, python-llfuse, python2-llfuse, python-webob, python2-webob, python-xlrd, python2-xlrd, python-tables, python2-tables, python-pip, python2-pip, python-libarchive-c, python2-libarchive-c, python-docopt, python2-docopt, python-pyrfc3339, python2-pyrfc3339, python-configobj, python2-configobj, python-clint, python2-clint, python-rply, python2-rply, python2-rpython, python-widgetsnbextension, python2-widgetsnbextension jupyter, python-jupyter-console, python2-jupyter-console, python-hy, python2-hy, python-urllib3, python2-urllib3, python-rsa, python2-rsa, python-tox, python2-tox, python2-hypothesis, python-paste, python2-paste, python-pastescript, python2-pastescript, python2-unicodecsv, python-pkgconfig, python2-pkgconfig, python2-rope, python-sqlparse, python2-sqlparse, python-gevent, python2-gevent, python-tabulate, python2-tabulate, python-arrow, python2-arrow, python-cleo, python2-cleo, python-fake-factory, python2-fake-factory, ptpython): Likewise. * gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise. * gnu/packages/terminals.scm (asciinema): Likewise. * gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise. * gnu/packages/xdisorg.scm (arandr): Likewise.
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 1b)Hartmut Goebel
This patch contains the changes in all modules beside python.scm where removing setuptools from the inputs could be achieved by removing complete lines. * gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs], [native-inputs] and [propagated-inputs] where python-setuptools or python2-setuptools are the sole entries. Remove python-setuptools and python2-setuptools listed on a line by its own from [inputs], [native-inputs] and [propagated-inputs]. * gnu/packages/backup.scm (rdiff-backup): Likewise. * gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc, multiqc): Likewise. * gnu/packages/django.scm (python-django, python2-django, python-django-simple-math-captcha, python2-django-simple-math-captcha): Likewise. * gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise. * gnu/packages/game-development.scm (python-pygame): Likewise. * gnu/packages/key-mon.scm (key-mon): Likewise. * gnu/packages/mail.scm (khard): Likewise. * gnu/packages/music.scm (beets, python2-pyechonest): Likewise. * gnu/packages/openstack.scm (python-bandit, python2-bandit, python-debtcollector, python2-debtcollector, python-mox3, python2-mox3, python-os-client-config, python2-os-client-config, python-oslo.config, python2-oslo.config, python-oslo.context, python2-oslo.context, python-oslo.i18n, python2-oslo.i18n, python-oslo.serialization, python2-oslo.serialization, python-oslosphinx, python2-oslosphinx, python-oslotest, python2-oslotest, python-oslo.utils, python2-oslo.utils, python-swiftclient, python2-swiftclient): Likewise. * gnu/packages/pdf.scm (pdfposter): Likewise. * gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
2016-11-15gnu: Remove python-setuptools and python2-setuptools from inputs (part 1a)Hartmut Goebel
This patch contains the changes in python.scm where removing setuptools from the inputs could be achieved by removing complete lines. * gnu/packages/python.scm (python-psutil, python2-psutil, python-py-bcrypt, python2-py-bcrypt, python-paramiko, python2-paramiko, python-httplib2, python2-httplib2, python-ecdsa, python2-ecdsa, python-ccm, python2-ccm, python2-backport-ssl-match-hostname, python-pycrypto, python2-pycrypto, python-six, python2-six, python-dateutil, python2-dateutil, python2-mechanize, python-extras, python2-extras, python-mimeparse, python2-mimeparse, python-nose, python2-nose, python-nose2, python2-nose2, python-unittest2, python2-unittest2, python-py, python2-py, python-testresources, python2-testresources, python-fixtures-0.3.16, python-fixtures, python2-fixtures, python-coverage, python2-coverage, python-discover, python2-discover, python-exif-read, python2-exif-read, python-pyld, python2-pyld, python-certifi, python2-certifi, python-click, python2-click, python-vcversioner, python2-vcversioner, python-unidecode, python2-unidecode, python-pyyaml, python2-pyyaml, python-markupsafe, python2-markupsafe, python-pystache, python2-pystache, python-docutils, python2-docutils, python-pygments, python2-pygments, python-sphinx-rtd-theme, python2-sphinx-rtd-theme, python-blinker, python2-blinker, python-rq, python2-rq, python-numpy, python2-numpy, python-distutils-extra, python2-distutils-extra, python2-elib.intl, python-pillow, python2-pillow, python-xcffib, python2-xcffib, python-decorator, python2-decorator, python-gridmap, python2-gridmap, python-pickleshare, python2-pickleshare, python-isodate, python2-isodate, python-html5lib, python2-html5lib, python2-cssutils, python-cssselect, python2-cssselect, python-netifaces, python2-netifaces, python-sympy, python2-sympy, python-testlib, python2-testlib, python2-xlib, python-singledispatch, python2-singledispatch, python-backports-abc, python2-backports-abc, python-pep8, python2-pep8, python-pyflakes, python2-pyflakes, python-fonttools, python2-fonttools, python-ly, python-appdirs, python2-appdirs, python-netaddr, python2-netaddr, python-wrapt, python2-wrapt, python-iso8601, python2-iso8601, python-monotonic, python2-monotonic, python-prettytable, python2-prettytable, python-pyasn1-modules, python2-pyasn1-modules, python-idna, python2-idna, python-pretend, python2-pretend, python-cryptography-vectors, python2-cryptography-vectors, python-cryptography, python2-cryptography, python-pyopenssl, python2-pyopenssl, python-debian, python2-debian, python-chardet, python2-chardet, python-zope-event, python2-zope-event, python-zope-i18nmessageid, python2-zope-i18nmessageid, python-websocket-client, python2-websocket-client, python-args, python2-args, python-astor, python2-astor, python2-functools32, python2-futures, python2-promise, python-colorama, python2-colorama, python-pluggy, python2-pluggy, python-jmespath, python2-jmespath, python-botocore, python2-botocore, awscli, python-pytest-subtesthack, python2-pytest-subtesthack, python-pastedeploy, python2-pastedeploy, python-magic, python2-magic, python2-s3cmd, python2-bz2file, python-cysignals, python2-cysignals, python-py3status, python-tblib, python2-tblib, python-greenlet, python2-greenlet, python-twisted, python2-twisted, python-kazoo, python2-kazoo, python-pykafka, python2-pykafka, python2-jsonrpclib, python-chai, python2-chai, python-inflection, python2-inflection, python-pylev, python2-pylev, python-lazy-object-proxy, python2-lazy-object-proxy, python-dnspython, python2-dnspython, python-email-validator, python2-email-validator, python-ukpostcodeparser, python2-ukpostcodeparser, python-pyaml, python2-pyaml, python-flexmock, python2-flexmock, python-orator, python2-orator, python-bleach, python2-bleach, python-ipywidgets, python2-ipywidgets, python-nbconvert, python2-nbconvert, python-nbformat, python2-nbformat, python-axolotl-curve25519, python-axolotl2-curve25519, python-axolotl, python2-axolotl, python-nautilus, python-s3transfer): Remove python-setuptools and python2-setuptools from [inputs], [native-inputs] or [propagated-inputs]. Remove [inputs], [native-inputs] and [propagated-inputs] where python-setuptools or python2-setuptools were the sole entry.
2016-11-15lint: more packages to probably be a native input.Hartmut Goebel
* guix/scripts/lint.scm (check-inputs-should-be-native package): Add python packages which are typically used for testing or for building the documentation.
2016-11-15guix: Add lint-checker for packages which should be no inputs at all.Hartmut Goebel
Also refactor some common code into a new function. Examples for these pacakges are python(2)-setuptools and python(2)-pip, which are installed together with python itself. * guix/scripts/lint.scm (warn-if-package-has-input): New procedure. (check-inputs-should-be-native package): Use it; rename and clean-up variables. (check-inputs-should-not-be-an-input-at-all): New procedure. (%checkers) Add it. * doc/guix.texi (Python Modules): Document it. * tests/lint.scm: ("inputs: python-setuptools should not be an input at all (input)", "inputs: python-setuptools should not be an input at all (native-input)" "inputs: python-setuptools should not be an input at all (propagated-input)"): Add tests.
2016-11-15gnu: python-2.7: Add all guix prefixes in PYTHONPATH to site-prefixes.Hartmut Goebel
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file. * gnu/packages/python.scm (python-2)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add patch.
2016-11-15guix: python-build-system: Add background about Python installation methods.Hartmut Goebel
2016-11-15guix: python-build-system: Delete .egg-info file created in phase check.Hartmut Goebel
* guix/build/python-build-system.scm (check): Delete .egg-info dirs which did not exist prior to calling setup.py but afterwards.
2016-11-15guix: python-build-system: Add helpers for getting and setting PYTHONPATH.Hartmut Goebel
* guix/build/python-build-system.scm (add-installed-pythonpath, site-packages): New exported procedures.
2016-11-15guix: python-build-system: Add option "#:use-setuptools?" (default true).Hartmut Goebel
* guix/build-system/python.scm (python-build): New keyword argument "#:use-setuptools?", defaulting to #t. * guix/build/python-build-system.scm (call-setup-py): New positional parameter "use-setuptools?". If false, do not use the shim-wrapper for addin setuptools. (build, check): accept keyword- parameter, and pass to call-setuppy. (install): same; if "use-setuptools?" is false, do not use options "--root" and "--single-version-externally-managed" for setup.py. * doc/guix.texi (Build Systems): Document it.
2016-11-15guix: python-build-system: Import setuptools before calling `setup.py'.Marius Bakke
This is needed for packages using "distutils" instead of "setuptools" since the former does not understand the "--single-version-externally-managed" flag. Also export __file__ since it will be unset when setup.py is called from python "exec". * guix/build/python-build-system.scm (call-setuppy): extend "python setup.py" call to import setuptools, export __file__, and call setup.py from setuptools python environment. Co-Authored-By: Hartmut Goebel <h.goebel@crazy-compilers.com>
2016-11-15guix: build all Python packages with --single-version-externally-managed.Hartmut Goebel
This requires setuptools to be installed together with python, which is the case for Python 3 anyway and which we do for our build of Python 2 (see last commit). * guix/build/python-build-system.scm (install): Add "--single-version-externally-managed" and "--root=/" to params to be passed to call-setuppy. Remove thus needless manipulation of PYTHONPATH. Remove now unused argument "inputs".
2016-11-15gnu: ensure pip and setuptools are installed even for Python 2.Hartmut Goebel
* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to configure-flags. * doc/guix.texi (Python Modules): Document it.
2016-11-15guix: python-build-system: Fix an outdated comment.Hartmut Goebel
2016-11-15gnu: libmicrohttpd: Update to 0.9.52.Efraim Flashner
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52. [home-page]: Use https.
2016-11-15gnu: octave: Update to 4.2.0.Efraim Flashner
* gnu/packages/maths.scm (octave): Update to 4.2.0. [native-inputs]: Add lzip. [home-page]: Use https.