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2018-04-26gnu: scotch: Update to 6.0.5a.Eric Bavier
* gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files. * gnu/packages/patches/scotch-build-parallelism.patch, gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/maths.scm (scotch): Update to 6.0.5a. [source](patches): Adjust accordingly.
2018-04-27gnu: darktable: Update to 2.4.3.Tobias Geerinckx-Rice
* gnu/packages/photo.scm (darktable): Update to 2.4.3.
2018-04-27gnu: quassel: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (quassel)[home-page]: Use HTTPS.
2018-04-27gnu: quassel: Update to 0.12.5.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (quassel): Update to 0.12.5. [source]: Remove patch. * gnu/packages/patches/quassel-fix-tls-check.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-04-27gnu: libetonyek: Update to 0.1.8.Tobias Geerinckx-Rice
gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.8.
2018-04-27gnu: cpuid: Update to 20180419.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (cpuid): Update to 20180419.
2018-04-27gnu: pcmanfm: Update to 1.3.0.Tobias Geerinckx-Rice
* gnu/packages/lxde.scm (pcmanfm): Update to 1.3.0. [source]: Remove patch. * gnu/packages/patches/pcmanfm-CVE-2017-8934.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-04-27gnu: libfm: Update to 1.3.0.Tobias Geerinckx-Rice
* gnu/packages/lxde.scm (libfm): Update to 1.3.0.
2018-04-27gnu: perl-log-any-adapter-log4perl: Update to 0.09.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-log-any-adapter-log4perl): Update to 0.09. [source]: Update maintainer URI.
2018-04-27gnu: perl-safe-isa: Update to 1.000010.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-safe-isa): Update to 1.000010.
2018-04-27gnu: perl-sub-quote: Update to 2.005001.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-sub-quote): Update to 2.005001.
2018-04-27gnu: perl-capture-tiny: Update to 0.48.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-capture-tiny): Update to 0.48.
2018-04-27gnu: perl-b-hooks-endofscope: Update to 0.24.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-b-hooks-endofscope): Update to 0.24.
2018-04-27gnu: perl-file-sharedir-install: Update to 0.13.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.13.
2018-04-27gnu: perl-test-notabs: Update to 2.02.Tobias Geerinckx-Rice
* gnu/packages/perl-check.scm (perl-test-notabs): Update to 2.02.
2018-04-27gnu: python-simplejson: Update to 3.14.0.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-simplejson): Update to 3.14.0.
2018-04-27gnu: python2-ndg-httpsclient: Fix build.Tobias Geerinckx-Rice
This might be a follow-up to a39cc016329f1f490ac7629fa81c9b686e7b0f4e from 2016, which would be neat. * gnu/packages/python-web.scm (python2-ndg-httpsclient)[arguments]: Use SUBSTITUTE-KEYWORD-ARGUMENTS to still skip tests.
2018-04-26gnu: paperkey: Update to 1.5.Christopher Lemmer Webber
* gnu/packages/gnupg.scm (paperkey): Update to 1.5.
2018-04-27gnu: bedops: Update to 2.4.33.Roel Janssen
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.33.
2018-04-27gnu: samtools: Update to 1.8.Roel Janssen
* gnu/packages/bioinformatics.scm (samtools): Update to 1.8.
2018-04-27gnu: bcftools: Update to 1.8.Roel Janssen
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.8. * gnu/local.mk: Remove patch. * gnu/packages/patches/bcftools-regidx-unsigned-char.patch: Remove file.
2018-04-27gnu: htslib: Update to 1.8.Roel Janssen
* gnu/packages/bioinformatics.scm (htslib): Update to 1.8.
2018-04-26gnu: PackageKit: Update to 1.1.10 [fixes CVE-2018-1106].Leo Famulari
* gnu/packages/freedesktop.scm (packagekit): Update to 1.1.10.
2018-04-26gnu: emacs-magit-popup: Update to 2.12.3.Alex Kost
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.3.
2018-04-26gnu: emacs-with-editor: Update to 2.7.2.Alex Kost
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.7.2.
2018-04-26gnu: geiser: Update to 0.10.Alex Kost
* gnu/packages/emacs.scm (geiser): Update to 0.10.
2018-04-26gnu: python-josepy: Update to 1.1.0.Leo Famulari
* gnu/packages/python-crypto.scm (python-josepy, python2-josepy): Update to 1.1.0.
2018-04-26gnu: python-qrcode: Update to 6.0.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-qrcode): Update to 6.0.
2018-04-26gnu: python2-pathlib2: Update to 2.3.2.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python2-pathlib2): Update to 2.3.2.
2018-04-26gnu: python-rst.linker: Update to 1.9.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-rst.linker): Update to 1.9.
2018-04-26gnu: python-sphinx@1.6: Update to 1.6.4.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-sphinx-1.6): Update to 1.6.4.
2018-04-26gnu: python-ndg-httpsclient: Update to 0.5.0.Tobias Geerinckx-Rice
* gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.5.0.
2018-04-26gnu: r-ztable: Update to 0.1.8.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-ztable): Update to 0.1.8.
2018-04-26gnu: r-sn: Update to 1.5-2.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-sn): Update to 1.5-2.
2018-04-26gnu: r-sourcetools: Update to 0.1.7.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.7.
2018-04-26gnu: python-html5-parser: Update to 0.4.5.Tobias Geerinckx-Rice
* gnu/packages/python-web.scm (python-html5-parser): Update to 0.4.5.
2018-04-26gnu: mg: Update to 20180408.Tobias Geerinckx-Rice
* gnu/packages/text-editors.scm (mg): Update to 20180408. [source]: Switch from discontinued proper releases to a git tag.
2018-04-26gnu: mg: Find ncurses through pkg-config.Tobias Geerinckx-Rice
* gnu/packages/text-editors.scm (mg)[arguments]: Remove explicit ‘CURSES_LIBS=-lncurses’ setting from #:make-flags.
2018-04-26gnu: fio: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/benchmark.scm (fio)[arguments]: Substitute INVOKE for SYSTEM* and end phase with explicit #t.
2018-04-26gnu: ghostwriter: Update to 1.6.2.Tobias Geerinckx-Rice
* gnu/packages/text-editors.scm (ghostwriter): Update to 1.6.2.
2018-04-26gnu: youtube-viewer: Update to 3.3.4.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-viewer): Update to 3.3.4.
2018-04-26gnu: openvpn: Update to 2.4.6.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (openvpn): Update to 2.4.6.
2018-04-26gnu: perl-text-glob: Update to 0.11.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-text-glob): Update to 0.11.
2018-04-26gnu: perl-task-weaken: Update to 1.06.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-task-weaken): Update to 1.06.
2018-04-26gnu: perl-module-find: Update to 0.13.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-module-find): Update to 0.13.
2018-04-26gnu: perl-mime-types: Update to 2.17.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-mime-types): Update to 2.17.
2018-04-26gnu: perl-file-sharedir-install: Update to 0.12.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.12.
2018-04-26gnu: perl-devel-overloadinfo: Update to 0.005.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-devel-overloadinfo): Update to 0.005.
2018-04-26gnu: perl-class-inspector: Update to 1.32.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-class-inspector): Update to 1.32.
2018-04-26gnu: perl-file-find-rule: Update to 0.34.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-file-find-rule): Update to 0.34.
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