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2022-02-13gnu: Add python-mne. wip-python-mneVivien Kraus
* gnu/packages/python-science.scm (python-mne): New variable.
2022-02-13gnu: Add python-mffpy.Vivien Kraus
* gnu/packages/python-science.scm: New variable.
2022-02-13gnu: Add python-pyvistaqt.Vivien Kraus
* gnu/packages/python-science.scm (python-pyvistaqt): New variable.
2022-02-13gnu: Add python-pytest-memprof.Vivien Kraus
* gnu/packages/python-check.scm (python-pytest-memprof): New variable.
2022-02-13gnu: Add python-pyvista.Vivien Kraus
* gnu/packages/python-science.scm (python-pyvista): New variable.
2022-02-13gnu: vtk: Also install a .egg-info.Vivien Kraus
* gnu/packages/image-processing.scm (vtk) [phase install-egg-info]: New phase.
2022-02-13gnu: Add python-nilearn.Vivien Kraus
* gnu/packages/python-science.scm (python-nilearn): New variable.
2022-02-13gnu: Add python-scooby.Vivien Kraus
* gnu/packages/python-science.scm (python-scooby): New variable.
2022-02-13gnu: Add python-pyvips.Vivien Kraus
* gnu/packages/python-science.scm (python-pyvips): New variable.
2022-02-13gnu: Add python-pyperf.Vivien Kraus
* gnu/packages/python-xyz.scm (python-pyperf): New variable.
2022-02-13gnu: Add python-no-version.Vivien Kraus
* gnu/packages/python-xyz.scm (python-no-version): New variable.
2022-02-13gnu: Add python-dipy.Vivien Kraus
* gnu/packages/python-science.scm (python-dipy): New variable.
2022-02-13gnu: Add python-picard.Vivien Kraus
* gnu/packages/python-science.scm: New variable.
2022-02-13gnu: Add python-pymatreader.Vivien Kraus
* gnu/packages/python-xyz.scm (python-pymatreader): New variable.
2022-02-13gnu: Add python-h5io.Vivien Kraus
* gnu/packages/python-xyz.scm (python-h5io): New variable.
2022-02-13gnu: python-pooch: Update to 1.6.0.Vivien Kraus
* gnu/packages/python-xyz.scm (python-pooch): Update to 1.6.0. [native-inputs]: Add python-setuptools-scm.
2022-02-13gnu: Add python-pytest-steps.Vivien Kraus
* gnu/packages/python-xyz.scm (python-pytest-steps): New variable.
2022-02-13gnu: Add python-pytest-harvest.Vivien Kraus
* gnu/packages/python-xyz.scm (python-pytest-harvest): New variable.
2022-02-13gnu: Add python-pytest-cases.Vivien Kraus
* gnu/packages/python-xyz.scm (python-pytest-cases): New variable.
2022-02-13gnu: Add python-decopatch.Vivien Kraus
* gnu/packages/python-xyz.scm (python-decopatch): New variable.
2022-02-13gnu: Add a test-less python-pytest-cases.Vivien Kraus
* gnu/packages/python-xyz.scm (python-pytest-cases-minimal): New variable.
2022-02-13gnu: Add a test-less python-pytest-steps.Vivien Kraus
* gnu/packages/python-xyz.scm (python-pytest-steps-minimal): New variable.
2022-02-13gnu: Add a test-less python-pytest-harvest.Vivien Kraus
* gnu/packages/python-xyz.scm (python-pytest-harvest-minimal): New variable.
2022-02-13gnu: Add a test-less python-decopatch.Vivien Kraus
* gnu/packages/python-xyz.scm (python-decopatch-minimal): New variable.
2022-02-13gnu: Add python-pytest-logging.Vivien Kraus
* gnu/packages/python-check.scm (python-pytest-logging): New variable.
2022-02-13gnu: Add python-makefun.Vivien Kraus
* gnu/packages/python-xyz.scm (python-makefun): New variable.
2022-02-13gnu: Add python-flake8-array-spacing.Vivien Kraus
* gnu/packages/python-science.scm (python-flake8-array-spacing): New variable.
2022-02-13gnu: Add python-nitime.Vivien Kraus
* gnu/packages/python-science.scm (python-nitime): New variable.
2022-02-13gnu: Add python-nibabel.Vivien Kraus
* gnu/packages/python-science.scm (python-nibabel): New variable.
2022-02-13gnu: Add python-eeglabio.Vivien Kraus
* gnu/packages/python-science.scm (python-eeglabio): New variable.
2022-02-13gnu: Add python-edflib.Vivien Kraus
* gnu/packages/python-science.scm (python-edflib): New variable.
2022-02-13gnu: Add python-imageio-ffmpeg.Vivien Kraus
* gnu/packages/python-xyz.scm (python-imageio-ffmpeg): New variable.
2022-02-13gnu: lsh: Fix build with GCC 10.Tobias Geerinckx-Rice
* gnu/packages/ssh.scm (lsh)[arguments]: Add "CFLAGS=-fcommon" to #:configure-flags. Don't explicitly return #t from phases. [source]: Don't explicitly return #t from snippet.
2022-02-13gnu: dovecot-pigeonhole: Update to 0.5.18.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (dovecot-pigeonhole): Update to 0.5.18.
2022-02-13gnu: dovecot: Update to 2.3.18.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (dovecot): Update to 2.3.18.
2022-02-13gnu: tor: Update to 0.4.6.10.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (tor): Update to 0.4.6.10.
2022-02-15gnu: fnott: Update to 1.2.1.Jai Vetrivelan
* gnu/packages/wm.scm (fnott): Update to 1.2.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-02-15guix system: Fix 'describe' when booting the latest generation.Ludovic Courtès
Fixes a regression introduced in 9679123ce083c69cdfd1505d95a4066d41280394, whereby 'guix system describe' would error out when /run/current-system points to /gnu/store/…-system, which is the case when booting the latest generation or after reconfigure. * guix/scripts/system.scm (process-command): For 'describe'. Try 'generation-number' with and without the optional argument.
2022-02-15gnu: mumps: Remove input labels.Ludovic Courtès
* gnu/packages/maths.scm (mumps)[inputs]: Remove labels. [arguments]: Adjust 'configure' phase to not rely on the "mpi" and "blas" labels. (mumps-metis, mumps-openmpi, mumps-metis-openmpi): Use 'modify-inputs'.
2022-02-15gnu: scotch: Update to 7.0.1.Ludovic Courtès
* gnu/packages/maths.scm (scotch): Update to 7.0.1. [source]: Switch to 'git-fetch'. [build-system]: Switch to CMAKE-BUILD-SYSTEM. [arguments]: Add #:configure-flags. Remove #:make-flags. Remove 'chdir-to-src', 'configure', and 'build-esmumps' phases. [properties]: Update 'release-monitoring-url' property. (scotch32, pt-scotch, pt-scotch32): Update accordingly, replacing now useless build phases with #:configure-flags. (scotch-shared, pt-scotch-shared): Mark as deprecated. (mumps)[arguments]: In 'configure' phase, use '-lesmumps' unconditionally, since that's now how pt-scotch calls it.
2022-02-15gnu: texlive-amsfonts/fixed: Do not generate tfm from afm and pl files.Ricardo Wurmus
The TFM files are included in the amsfonts bundle and are meant to installed as is. They were not meant to be the result of converting afm or pl files. We ended up with subtly broken fonts due to this attempted conversion. * gnu/packages/tex.scm (texlive-amsfonts/fixed)[source]: Fetch tfm directory. [arguments]: Remove custom #:modules; remove build phases 'build-fonts and 'install-generated-fonts; adjust 'remove-extra-files; add build phase 'chdir and 'unchdir. [native-inputs]: Remove texlive-fontinst.
2022-02-15gnu: filezilla: Update to 3.58.0.Jai Vetrivelan
* gnu/packages/ftp.scm (filezilla): Update to 3.58.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-02-15gnu: libfilezilla: Update to 0.36.0.Jai Vetrivelan
* gnu/packages/ftp.scm (libfilezilla): Update to 0.36.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-02-15gnu: fish: Update to 3.3.1.Steve George
* gnu/packages/shells/scm (fish): Update to 3.3.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-02-15gnu: foot: Update to 1.11.0Felipe Balbi
* gnu/packages/terminals.scm (foot): Update to 1.11.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-02-15gnu: fcft: Update to 3.0.1Felipe Balbi
* gnu/packages/fontutils.scm (fcft): Update to 3.0.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-02-15gnu: picom: Update to 9.1.Jai Vetrivelan
* gnu/packages/compton.scm (picom): Update to 9.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-02-15gnu: plocate: Update to 1.1.15.Jai Vetrivelan
* gnu/packages/search.scm (plocate): Update to 1.1.15. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-02-15gnu: asymptote: Use G-expressions.Nicolas Goaziou
* gnu/packages/plotutils.scm (asymptote)[arguments]<#:phases>: Use G-expressions.
2022-02-15gnu: asymptote: Update to 2.78.Nicolas Goaziou
* gnu/packages/plotutils.scm (asymptote): Update to 2.78. [source]<snippet>: Delete bundled RapidJSON. [arguments]<#:phases>: Add a phase to use system RapidJSON. Update location for modified ".cpp" file. [native-inputs]: Add CMAKE.
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