Age | Commit message (Collapse) | Author |
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* gnu/packages/bioinformatics.scm (edirect): Update to 3.50.
[native-inputs]: Remove "unzip".
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Fixes <http://bugs.gnu.org/16791>.
* gnu/packages/patches/w3m-force-ssl_verify_server-on.patch: New file.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch: New file.
* gnu/packages/patches/w3m-disable-weak-ciphers.patch: New file.
* gnu/packages/w3m.scm (w3m)[source]: Add patches.
* gnu-system.am (dist_patch_DATA): Add the new files.
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* gnu/packages/patches/w3m-fix-compile.patch: Rename this file...
* gnu/packages/patches/w3m-libgc.patch: ...to this, and adjust patch
prefix level to '-p1'.
* gnu-system.am (dist_patch_DATA): Update patch name.
* gnu/packages/w3m.scm (w3m)[source]: Update patch name.
[source]: Drop patch flag -p0.
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* guix/build-system/gnu.scm (package-with-explicit-inputs): Use
'ensure-keyword-arguments' instead of appending to ARGS.
* gnu/packages/commencement.scm (static-bash-for-glibc): Add missing
#:guile argument.
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* guix/utils.scm (delkw, ensure-keyword-arguments): New procedures.
* tests/utils.scm ("ensure-keyword-arguments"): New test.
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* guix/http-client.scm (read-header-line): New procedure. Use it.
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* gnu/packages/package-management.scm (guix-devel): Update to f888c0b.
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* guix/http-client.scm: Fix Guile version number in comment for Guile
commit 5a10e41.
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* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
[arguments]: Replace 'check phase.
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* guix/scripts/lint.scm (package-vulnerabilities): Catch
'getaddrinfo-error'.
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* gnu/packages/admin.scm (sudo)[arguments]: Pass
--with-rundir=/var/run/sudo since /var/run is cleaned up at boot time on
GuixSD whereas /run is not.
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This makes sure that critical errors such as unbound-variable do not go
undetected.
* gnu/services.scm (cleanup-gexp): Introduce local 'fail-safe' macro and
use it. Remove uses of 'false-if-exception'.
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* gnu/packages/ldc.scm (ldc)[license]: Replace invalid use of
'license:x11-style' by LICENSE:BOOST1.0.
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The .gem file stored in GEM_HOME after install is both redundant and an
archive that stores timestamped files which makes builds
non-deterministic, so delete it after 'gem install'.
* guix/build/ruby-build-system.scm (install): Remove cached gem after
install.
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* gnu/packages/java.scm (icedtea7): Rename variable to...
(icedtea-7): ...this.
(icedtea): Refer to "icedtea-7".
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* gnu/packages/java.scm (icedtea6): Rename variable to...
(icedtea-6): ...this.
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* gnu/packages/java.scm (icedtea6): Change package name to "icedtea".
(icedtea7): Inherit package name.
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* gnu/packages/java.scm (icedtea): New variable.
(swt)[native-inputs]: Replace "icedtea6" with "icedtea".
* gnu/packages/bioinformatics.scm (htsjdk)[native-inputs]: Likewise.
(ngs-java)[inputs]: Likewise.
* gnu/packages/kodi.scm (kodi)[native-inputs]: Replace "icedtea7" with
"icedtea".
* gnu/packages/ruby.scm (ruby-rjb)[native-inputs]: Replace "icedtea7"
with "icedtea".
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* gnu/packages/java.scm (icedtea6)[arguments]: Unpack OpenJDK sources to
"openjdk.src".
(icedtea7)[arguments]: Inherit "--with-openjdk-src-dir" flag; refer to
"openjdk.src" in build phases; simplify "unpack" phase.
[native-inputs]: Rename "openjdk-drop" to "openjdk-src".
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* gnu/packages/bioinformatics.scm (jellyfish): New variable.
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* configure.ac: Change version to 0.9.1.
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* doc/guix.texi: substitute 'the the' with 'the'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/build/pull.scm (call-with-process, report-build-progress)
(p-for-each): Remove.
(build-guix): Load and compile files in one process.
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* gnu/packages/ebook.scm (calibre): Update to 2.48.0.
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* gnu/packages/ldc.scm: New file.
* gnu/packages/patches/ldc-disable-tests.patch: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add ldc.scm.
(dist_patch_DATA): Add patch file.
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* gnu/packages/emacs.scm (emacs-undo-tree): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/emacs.scm (emacs)[arguments]: Use 'modify-phases'. Add
'remove-info.info' phase.
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* gnu/build/linux-boot.scm (boot-system): Leave
'current-module-debugging-port' unchanged.
* gnu/build/linux-modules.scm (load-linux-module*): Update comment about
'mmap'.
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* gnu/services.scm (compute-boot-script): Remove /tmp and /var/run
deletion code from here.
(cleanup-gexp): New procedure with /tmp and /var/run deletion code
formerly in 'compute-boot-script'.
(cleanup-service-type): New variable.
* gnu/system.scm (essential-services): Add an instance of
CLEANUP-SERVICE-TYPE.
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For some time /tmp and /var/run were not being deleted because
'delete-file-recursively' was unbound.
* gnu/services.scm (compute-boot-script)[%modules, modules, compiled]:
New variables. Use them to augment the module search path.
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* guix/scripts/package.scm (find-packages-by-description): Change 'rx'
parameter to 'regexps'.
[matches-all?, matches-one?]: New procedures.
Use them.
(process-query): Collect regexps from all 'search' queries, and pass
them to 'find-packages-by-description'.
* tests/guix-package.sh: Add tests.
* doc/guix.texi (Invoking guix package): Document it.
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* guix/ui.scm (show-version-and-exit): Increment copyright year.
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Previously, the 'git checkout' invocation would remove sub-modules that
had been initialized by 'git clone --recursive'.
* guix/build/git.scm (git-fetch): Never use "git clone --recursive".
Invoke "git submodule update --init --recursive" after "git checkout".
Remove '.git' directories as the last step.
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* gnu/packages/patches/gtk3-respect-GUIX_GTK3_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK3_PATH.
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* gnu/packages/patches/gtk2-respect-GUIX_GTK2_PATH: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2) [source]: Add patch.
[native-search-paths]: Add search path for GUIX_GTK2_PATH.
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* gnu/packages/patches/julia-0.3.10-fix-empty-array.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/julia.scm (julia): Update to 0.4.2.
[arguments]: Remove phase "fix-building-with-mcjit-llvm"; replace phase
"patch-include-path" with "fix-include-and-link-paths"; add phase
"hardcode-paths"; add missing make-flags.
[inputs]: Replace "pcre" with "pcre2"; replace "git" with "libgit2"; add
"coreutils"; add "libuv-julia"; add "wget"; add "which".
[native-inputs]: Remove "which".
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* gnu/packages/julia.scm (libuv-julia): New variable.
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* gnu/packages/textutils.scm (utf8proc): Update to 1.3.1.
[arguments]: Remove custom "install" phase.
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Fixes CVE-2015-{3223,5252,5299,5296,8467,5330}.
* gnu/packages/samba.scm (samba): Update to 4.3.3.
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Required for samba-4.3.3 in order to fix CVE-2015-5330 and
CVE-2015-3223.
* gnu/packages/samba.scm (ldb): Update to 1.2.24.
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* gnu/packages/bdw-gc.scm (libgc-for-c++): New variable.
* gnu/packages/plotutils.scm (asymptote): New variable.
* gnu/packages/patches/asymptote-gsl2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
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Before that it would include #f for most origins since that the default
value of 'origin-patch-guile'.
* guix/scripts/graph.scm (bag-node-edges): When 'origin-patch-guile'
returns #f, use (default-guile).
* tests/graph.scm ("bag DAG, including origins"): Check for an edge from
O to (default-guile).
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Fixes <http://bugs.gnu.org/22280>.
Reported by Leo Famulari <leo@famulari.name>.
* guix/scripts/graph.scm (%bag-emerged-node-type)[edges]: Mimic
%BAG-NODE-TYPE. This is a followup to 38b92da.
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* NEWS: Mention Emacs interface for Hydra and changes in variables.
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* emacs/guix-ui-package.el (guix-package-list-latest-builds): New
procedure.
(guix-package-list-mode-map): Bind "B" key to it.
(guix-output-list-mode-map): Likewise.
* doc/emacs.texi (Emacs List buffer): Document it.
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* emacs/guix-utils.el (guix-hexify, guix-number->bool): New procedures.
(guix-while-null): New macro.
* emacs/guix-hydra.el: New file.
* emacs/guix-hydra-build.el: New file.
* emacs/guix-hydra-jobset.el: New file.
* emacs.am (ELFILES): Add them.
* doc/emacs.texi (Emacs Hydra): New node.
(Emacs Interface): Add it.
* doc/guix.texi (Top): Add it.
(Substitutes): Mention Emacs interface.
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* emacs/guix-ui.el (guix-ui-read-profile): New procedure.
* emacs/guix-ui-package.el (guix-search-by-name)
(guix-search-by-regexp, guix-installed-packages)
(guix-obsolete-packages, guix-all-available-packages)
(guix-newest-available-packages): Use it.
* emacs/guix-ui-generation.el (guix-generations)
(guix-last-generations, guix-generations-by-time): Use it.
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* emacs/guix-buffer.el (guix-define-groups, guix-define-entry-type)
(guix-define-buffer-type): New macros.
(guix-buffer-define-interface): Add parent groups for the generated
custom groups.
* emacs/guix-info.el: Use 'guix-define-buffer-type' to generate custom
groups.
* emacs/guix-list.el: Likewise.
* emacs/guix-ui.el: Use 'guix-define-groups' to generate custom groups.
(guix-ui-define-entry-type): New macro.
* emacs/guix-ui-package.el: Use it.
* emacs/guix-ui-generation.el: Use it.
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* emacs/guix-utils.el (guix-completing-read): New procedure.
(guix-define-readers): Use it.
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* emacs/guix-list.el (guix-list-get-display-entries): New procedure.
* emacs/guix-ui-generation.el (guix-generation-get-display): Use it.
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