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2015-05-05gnu: vcftools: Remove "-m64" from CFLAGS.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (vcftools): Explicitly set CFLAGS to remove "-m64" flag.
2015-05-05gnu: fltk: Fix undefined symbol errors for shared libraries.Eric Bavier
* gnu/packages/patches/fltk-shared-lib-defines.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/fltk.scm (source)[patches]: New field.
2015-05-05gnu: ardour: Add library dirs to RUNPATH.Ricardo Wurmus
* gnu/packages/audio.scm (ardour)[arguments]: Add a build phase to add all library output directories to the rpath using linker flags.
2015-05-04gnu: Add bluez.David Thompson
* gnu/packages/linux.scm (bluez): New variable.
2015-05-04gnu: Add libical.David Thompson
* gnu/packages/calendar.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-05-04gnu: Add soil.David Thompson
* gnu/packages/gl.scm (soil): New variable.
2015-05-04records: Make 'make-syntactic-constructor' available at load/eval/expand.Ludovic Courtès
* guix/records.scm (make-syntactic-constructor): Wrap in 'eval-when'.
2015-05-04profiles: Use a &message error condition instead of 'error'.Ludovic Courtès
* guix/profiles.scm (sexp->manifest): Use 'raise' instead of 'error'.
2015-05-04search-paths: 'evaluate-search-paths' now returns spec/value pairs.Ludovic Courtès
* guix/search-paths.scm (evaluate-search-paths): Return specification/value pairs instead of variable/value pairs. * guix/scripts/package.scm (search-path-environment-variables): Adjust accordingly. Pass #:separator to 'environment-variable-definition'.
2015-05-04search-paths: Add 'environment-variable-definition'.Ludovic Courtès
* guix/search-paths.scm (environment-variable-definition): New variable. * guix/scripts/package.scm (search-path-environment-variables): Use it.
2015-05-04search-paths: Add 'evaluate-search-paths', from (guix scripts package).Ludovic Courtès
* guix/scripts/package.scm (with-null-error-port, evaluate-search-paths): Move to... * guix/search-paths.scm: ... here. * guix/utils.scm (string-tokenize*): Move to... * guix/search-paths.scm: ... here. * tests/utils.scm ("string-tokenize*"): Adjust accordingly.
2015-05-04Move search path specifications to (guix search-paths).Ludovic Courtès
* guix/packages.scm (<search-path-specification>, search-path-specification->sexp, sexp->search-path-specification): Move to... * guix/search-paths.scm: ... here. New file. * Makefile.am (MODULES): Add it. * guix/build-system/cmake.scm, guix/build-system/glib-or-gtk.scm, guix/build-system/gnu.scm, guix/build-system/haskell.scm, guix/build-system/perl.scm, guix/build-system/python.scm, guix/build-system/ruby.scm, guix/build-system/waf.scm, guix/profiles.scm, guix/scripts/package.scm: Use it.
2015-05-04gnu: Add markdown.Mathieu Lirzin
* gnu/packages/textutils.scm (markdown): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-05-04substitute: Increase TTL from 24h to 36h.Ludovic Courtès
* guix/scripts/substitute.scm (%narinfo-ttl): Increase to 36h.
2015-05-04gnu: Add libwpg.Andreas Enge
* gnu/packages/libreoffice.scm (libwpg): New variable.
2015-05-04guix: build: Fix indentation for --sources in help output.Eric Bavier
* guix/scripts/build.scm (show-help)[--sources]: Make indentation consistent with other long options.
2015-05-04gnu: curl: Update to 7.42.1.Mark H Weaver
* gnu/packages/patches/curl-support-capath-on-gnutls-conf.patch, gnu/packages/patches/curl-support-capath-on-gnutls.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/curl.scm (curl): Update to 7.42.1. Remove patches.
2015-05-04gnu: Add python-sympy.Ricardo Wurmus
* gnu/packages/python.scm (python-sympy, python2-sympy): New variables.
2015-05-04doc: Fix dangling references in the 'sh-symlink' monad example.Ludovic Courtès
Reported by Christopher A. Webber <cwebber@dustycloud.org>. * doc/guix.texi (The Store Monad): Reintroduce 'mlet' in 'sh-symlink' example. Move the simplified version below. Explain that the 'store' parameter is threaded.
2015-05-04doc: Suggest 'groupadd --system'.Ludovic Courtès
* doc/guix.texi (Build Environment Setup): Use 'groupadd --system'.
2015-05-04doc: Clarify installation from the binary tarball.Ludovic Courtès
* doc/guix.texi (Binary Installation): Specifically refer to group/account creation, and add an item for substitutes. Mention verifiability.
2015-05-04gnu: bamtools: Set rpath via LDFLAGS.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bamtools): Add a pre-configure phase setting $LDFLAGS to set the rpath to $out/lib/bamtools.
2015-05-04gnu: Add taskwarrior.Tomáš Čech
* gnu/packages/task-management.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-05-04gnu: Add samtools-0.1.19.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools-0.1): New variable.
2015-05-04gnu: samtools: Install libbam.a library.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase "install-library" to install the libbam.a library.
2015-05-04gnu: samtools: Remove patch-makefile-curses phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Remove patch-makefile-curses phase, use make-flags instead.
2015-05-04gnu: gcc-5.1: Add specific libvtv patch.Ludovic Courtès
* gnu/packages/patches/gcc-5.0-libvtv-runpath.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gcc.scm (gcc-5.1)[source]: Use it.
2015-05-04guix package: Introduce 'evaluate-search-paths'.Ludovic Courtès
* guix/scripts/package.scm (evaluate-search-paths): New procedure, with most of the code formerly in 'search-path-environment-variables'. (search-path-environment-variables): Use it.
2015-05-04guix package: Move profile cleaning out of 'search-path-environment-variables'.Ludovic Courtès
* guix/scripts/package.scm (user-friendly-profile): New procedure. (search-path-environment-variables): Remove 'profile' local variable. (display-search-paths): Explicitly call 'user-friendly-profile' for the argument to 'search-path-environment-variables'. (guix-package)[process-query]: Likewise.
2015-05-04gnu: Add totem-pl-parser.David Hashe
* gnu/packages/gnome.scm (totem-pl-parser): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-05-04doc: Replace reference to profile.sh with sh-symlinkChristopher Allan Webber
* doc/guix.texi (The Store Monad): Replace reference to "profile.sh", which is not defined until the next node, with "sh-symlink", which is defined immediately above Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-05-03gnu: Add libe-book.Andreas Enge
* gnu/packages/libreoffice.scm (libe-book): New variable. Co-authored-by: John Darrington <jmd@gnu.org>
2015-05-03gnu: Add zeromq.Ricardo Wurmus
* gnu/packages/networking.scm (zeromq): New variable.
2015-05-03gnu: rename (gnu packages socat) to (gnu packages networking).Ricardo Wurmus
* gnu/packages/socat.scm: Rename this ... * gnu/packages/networking.scm: ... to this. * gnu-system.am (GNU_SYSTEM_MODULES): Change socat.scm to networking.scm.
2015-05-03gnu: subversion: Update to 1.8.13.Mark H Weaver
* gnu/packages/version-control.scm (subversion): Update to 1.8.13.
2015-05-03gnu: gnupg: Update to 2.1.3.Mark H Weaver
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.3.
2015-05-03gnu: Add dovecot.Mark H Weaver
* gnu/packages/mail.scm (dovecot): New variable.
2015-05-03gnu: acpica: Update to 20150410.Mark H Weaver
* gnu/packages/admin.scm (acpica): Update to 20150410.
2015-05-03gnu: wpa-supplicant: Update to 2.4.Mark H Weaver
* gnu/packages/admin.scm (wpa-supplicant): Update to 2.4.
2015-05-03gnu: parallel: Update to 20150422.Ludovic Courtès
* gnu/packages/parallel.scm (parallel): Update to 20150422.
2015-05-03gnu: help2man: Update to 1.46.6.Ludovic Courtès
* gnu/packages/man.scm (help2man): Update to 1.46.6.
2015-05-03gnu: dejagnu: Update to 1.5.3.Ludovic Courtès
* gnu/packages/dejagnu.scm (dejagnu): Update to 1.5.3.
2015-05-03gnu: Add libwpd.Andreas Enge
* gnu/packages/libreoffice.scm (libwpd): New variable.
2015-05-03gnu: Add librevenge.Andreas Enge
* gnu/packages/libreoffice.scm (librevenge): New variable. Co-authored-by: John Darrington <jmd@gnu.org>
2015-05-03gnu: cppunit: Explicitly link with libdl.Andreas Enge
* gnu/packages/check.scm (cppunit)[arguments]: Add #:make-flags.
2015-05-02guix: build: Add transitive source building.Eric Bavier
* guix/scripts/build.scm (%options, options->derivations): Add --sources option. * doc/guix.texi (Invoking guix build): Document --sources option. * tests/guix-build.sh: Add tests.
2015-05-02guix: packages: Add package-direct-sources and package-transitive-sources.Eric Bavier
* guix/tests.scm (dummy-origin): New syntax. * guix/packages.scm (package-direct-sources) (package-transitive-sources): New procedures. * tests/packages.scm ("package-direct-sources, no source") ("package-direct-sources, #f source") ("package-direct-sources, not input source", "package-direct-sources") ("package-transitive-sources"): Test them.
2015-05-03install: Add bash-completion to the packages.Ludovic Courtès
* gnu/system/install.scm (installation-os)[packages]: Add BASH-COMPLETION.
2015-05-02profiles: Store search paths in manifests.Ludovic Courtès
Discussed in <http://bugs.gnu.org/20255>. * guix/packages.scm (sexp->search-path-specification): New variable. * guix/profiles.scm (<manifest-entry>)[search-paths]: New field. (package->manifest-entry): Initialize it. (manifest->gexp): Match it. Wrap #$deps in (propagated-inputs ...). Emit (search-paths ...). Increment version. (find-package): New procedure. (sexp->manifest)[infer-search-paths]: New procedure. Use it to initialize the 'search-paths' field for versions 0 and 1. Add case for version 2. * guix/scripts/package.scm (search-path-environment-variables)[manifest-entry->package]: Remove. Use 'manifest-entry-search-paths' instead of 'manifest-entry->package' plus 'package-native-search-paths'. * tests/profiles.scm ("profile-manifest, search-paths"): New test.
2015-05-02Merge branch 'core-updates'Ludovic Courtès
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