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2021-02-01gnu: python-fenics-dijitso: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/simulation.scm (python-fenics-dijitso) [phases]{check}: Do not alter PYTHONPATH.
2021-02-01gnu: gdk-pixbuf: Update to 2.42.2.Maxim Cournoyer
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.42.2. [phases]{disable-failing-tests}: Remove phase, to tentatively re-enable the tests disabled since 2015-08-22.
2021-02-01gnu: meson-0.55: Update to 0.55.3.Maxim Cournoyer
* gnu/packages/build-tools.scm (meson-0.55): Update to 0.55.3.
2021-02-01gnu: meson: Update to 0.56.2.Maxim Cournoyer
* gnu/packages/build-tools.scm (meson): Update to 0.56.2. acc# modified: gnu/packages/build-tools.scm
2021-02-01gnu: fifengine: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/games.scm (fifengine): Import the (guix build python-build-system) module. [phases]{check}: Simplify by using the 'add-installed-pythonpath' procedure. Remove trailing #t.
2021-02-01gnu: intel-xed: Update to 12.0.1.Maxim Cournoyer
This fixes the build on Python 3.9. * gnu/packages/assembly.scm (intel-xed): Update to 12.0.1.
2021-02-01gnu: python-hyperkitty: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/mail.scm (python-hyperkitty) [phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: graphite2: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/fontutils.scm (graphite2)[arguments]: Remove field.
2021-02-01gnu: python-django-url-filter: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-url-filter) [phases]: Delete trailing #t. {check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-django-statici18n: Do not read PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-statici18n) [phases]{check}: Do not read PYTHONPATH from environment. Do not set build/lib explicitly (the install site path is already in the Guix PYTHONPATH).
2021-02-01gnu: python-django-appconf: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-appconf) [phases]{check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-django-sortedm2m: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-sortedm2m) [phases]{check}: Do not alter PYTHONPATH. Remove trailing #t.
2021-02-01gnu: python-django-pipeline: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-pipeline): Remove trailing #t. [phases]{check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-django-contact-form: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-contact-form): [phases]{check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-pytest-django: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django): Remove trailing #t. [phases]{check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-django: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django): Remove trailing #t. [phases]{pre-check,check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-rpy2: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/statistics.scm (python-rpy2)[arguments]: Remove the '#:modules' argument. [phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: ghmm: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/machine-learning.scm (ghmm): Remove trailing #t. [phases]: Do not reorder the check phase after the install phase. {fix-PYTHONPATH}: Remove phase.
2021-02-01gnu: tensorflow: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/machine-learning.scm (tensorflow)[phases]: Delete trailing #t. {fix-python-build}: Do not alter PYTHONPATH.
2021-02-01gnu: python-libtmux: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/tmux.scm (python-libtmux)[phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: python-pyhamcrest: Update to 2.0.2.Maxim Cournoyer
* gnu/packages/check.scm (python-pyhamcrest): Update to 2.0.2. [propagated-inputs]: Remove python-six. [phases]{check}: Do not set PYTHONPATH. (python2-pyhamcrest): Remove variable.
2021-02-01gnu: behave: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/check.scm (behave)[arguments]: Remove the '#:phases' argument. [propagated-inputs]: Remove python-importlib-metadata and python-six.
2021-02-01gnu: ganeti: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/virtualization.scm (ganeti): Remove trailing #t. [phases]{build-bash-completions}: Do not set PYTHONPATH. {pre-check}: Do patch PYTHONPATH from script. {wrap}: Use the new GUIX_PYTHONPATH environment variable.
2021-02-01gnu: linkchecker: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/web.scm (linkchecker): Remove trailing #t. [phases]: Do not reorder the check phase after the install phase. {check}: Do not set PYTHONPATH.
2021-02-01gnu: python-cffi: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/libffi.scm (python-cffi): Remove trailing #t. [phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: python-xmlschema: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/xml.scm (python-xmlschema): Remove trailing #t. [phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: python-loompy: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python-loompy) [phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: python-scanpy: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python-scanpy)[phases] {check}: Do not set PYTHONPATH.
2021-02-01gnu: python-screed: Adjust following Python build system changes.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python-screed)[arguments]: Remove field, no longer necessary.
2021-02-01gnu: bamm: Update following changes to the Python build system.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (bamm): Delete trailing #t. [phases]{check}: Override rather than delete phase. Remove trailing #t. {post-install-check}: Delete phase. {wrap-executable}: Also wrap with the new GUIX_PYTHONPATH.
2021-02-01gnu: python-pysam: Adjust following Python build system changes.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Remove the '#:modules' argument. [phases]: Remove trailing #t. {check}: Do not manually set PYTHONPATH.
2021-02-01gnu: python-pybedtools: Streamline following Python build system changes.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python-pybedtools): Remove trailing #t. [phases]{check}: Do not manually set PYTHONPATH. [arguments]: Remove the '#:modules' argument.
2021-02-01gnu: intel-xed: Adjust build phase.Maxim Cournoyer
* gnu/packages/assembly.scm (intel-xed) [phases]: Delete trailing #t. {build}: Do not read PYTHONPATH from environment.
2021-02-01gnu: solaar: Do not read PYTHONPATH from environment.Maxim Cournoyer
* gnu/packages/admin.scm (solaar) [phases]{setenv-PATH}: Do not read PYTHONPATH from environment.
2021-02-01gnu: python2-virtualenv: Fix build.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-virtualenv)[arguments]{phases}: Remove argument.
2021-02-01gnu: python2-packaging-bootstrap: Add missing dependencyLars-Dominik Braun
* gnu/packages/python-xyz.scm (python2-packaging-bootstrap) [propagated-inputs]: Add python2-six-bootstrap.
2021-02-01gnu: python-traceback2: Add missing dependency.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-traceback2)[propagated-inputs]: Add python-six.
2021-02-01gnu: python-packaging-bootstrap: Remove dependency.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-packaging-bootstrap) [arguments]: Remove dependency from setup.py, which we do not provide for this variant.
2021-02-01gnu: python-automat: Remove broken console script.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-automat) [arguments]: Patch setup.py.
2021-02-01gnu: python-twisted: Remove broken console scripts.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-twisted) [arguments]: Patch setup.py.
2021-02-01gnu: python-idna-ssl: Add missing input.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-idna-ssl)[propagated-inputs]: Add python-idna.
2021-02-01gnu: python-traitlets: Add missing input.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-traitlets)[propagated-inputs]: Add python-six.
2021-02-01gnu: python-black: Remove blackd.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-black) [arguments]: Add new phase to prevent installation of blackd.
2021-02-01gnu: python-websockets: Fix Python package name.Lars-Dominik Braun
* gnu/packages/python-web.scm (python-websockets) [arguments]: Add new phase to fix package name.
2021-02-01gnu: python-slugify: Add missing input.Lars-Dominik Braun
* gnu/packages/python-web.scm (python-slugify) [propagated-inputs]: Add python-text-unidecode.
2021-02-01gnu: python-pyfakefs: Disable unreliable testLars-Dominik Braun
* gnu/packages/check.scm (python-pyfakefs) [arguments]: Add new phase to skip single test.
2021-02-01gnu: python-pytest-pep8: Fix package.Lars-Dominik Braun
* gnu/packages/check.scm (python-pytest-pep8)[arguments]: Remove dependency on pytest-cache and add proper 'check phase.
2021-02-01gnu: python-fixtures-bootstrap: Do not sanity check.Lars-Dominik Braun
* gnu/packages/check.scm (python-fixtures-bootstrap) [phases]{sanity-check}: Delete.
2021-02-01gnu: python-pytest-xdist: Add missing input, relax pytest requirement.Lars-Dominik Braun
* gnu/packages/check.scm: (python-pytest-xdist) [arguments]: Relax pytest version requirements. [propagated-inputs]: Add python-pytest-forked.
2021-02-01build/python: Add a sanity check phase.Lars-Dominik Braun
Add a new phase validating the usability of installed Python packages. * gnu/packages/aux-files/python/sanity-check.py: New file. * Makefile.am (AUX_FILES): Register it. * guix/build-system/python.scm (sanity-check.py): New variable. (lower): Add the script as an implicit input. * guix/build/python-build-system.scm: Remove trailing #t. (sanity-check): New phase. (%standard-phases): Use it. * tests/builders.scm: (make-python-dummy) (dummy-ok, dummy-dummy-nosetuptools, dummy-fail-requirements) (dummy-fail-import, dummy-fail-console-script): New variables. ("python-build-system: dummy-ok") ("python-build-system: dummy-dummy-nosetuptools") ("python-build-system: dummy-fail-requirements") ("python-build-system: dummy-fail-import") ("python-build-system: dummy-fail-console-script"): Add tests.
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