Age | Commit message (Collapse) | Author |
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1.
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* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1.
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* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1.
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* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1.
[propagated-inputs]: Add r-rcurl.
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* gnu/packages/mail.scm (khard): Update to 0.11.3.
[arguments]: Build with python instead of python-2. Remove
'disable-egg-compression' phase.
[propagated-inputs]: Don't use python-2 variants of propagated-inputs.
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* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
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* gnu/packages/statistics.scm (r-plogr): New variable.
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* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
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* gnu/packages/statistics.scm (r-base64): New variable.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
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* gnu/packages/statistics.scm (r-rprojroot): New variable.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
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* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
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* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
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* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
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* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
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* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
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* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
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* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
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* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
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* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
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* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
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* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
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* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
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* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
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* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
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* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
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* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.40-8.
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* gnu/packages/statistics.scm (r-hms): Update to 0.3.
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* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
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* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
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* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
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* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
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* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
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* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
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* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
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* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
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* gnu/packages/web.scm (r-htmlwidgets): Update to 0.8.
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* gnu/packages/web.scm (r-curl): Update to 2.3.
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* gnu/packages/web.scm (r-servr): Update to 0.5.
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* emacs/guix-about.el: Remove file.
* emacs/guix-backend.el: Likewise.
* emacs/guix-base.el: Likewise.
* emacs/guix-buffer.el: Likewise.
* emacs/guix-build-log.el: Likewise.
* emacs/guix-command.el: Likewise.
* emacs/guix-config.el.in: Likewise.
* emacs/guix-devel.el: Likewise.
* emacs/guix-entry.el: Likewise.
* emacs/guix-external.el: Likewise.
* emacs/guix-geiser.el: Likewise.
* emacs/guix-guile.el: Likewise.
* emacs/guix-help-vars.el: Likewise.
* emacs/guix-helper.scm.in: Likewise.
* emacs/guix-history.el: Likewise.
* emacs/guix-hydra-build.el: Likewise.
* emacs/guix-hydra-jobset.el: Likewise.
* emacs/guix-hydra.el: Likewise.
* emacs/guix-info.el: Likewise.
* emacs/guix-init.el: Likewise.
* emacs/guix-license.el: Likewise.
* emacs/guix-list.el: Likewise.
* emacs/guix-location.el: Likewise.
* emacs/guix-main.scm: Likewise.
* emacs/guix-messages.el: Likewise.
* emacs/guix-pcomplete.el: Likewise.
* emacs/guix-popup.el: Likewise.
* emacs/guix-prettify.el: Likewise.
* emacs/guix-profiles.el: Likewise.
* emacs/guix-read.el: Likewise.
* emacs/guix-ui-generation.el: Likewise.
* emacs/guix-ui-license.el: Likewise.
* emacs/guix-ui-location.el: Likewise.
* emacs/guix-ui-package.el: Likewise.
* emacs/guix-ui-system-generation.el: Likewise.
* emacs/guix-ui.el: Likewise.
* emacs/guix-utils.el: Likewise.
* emacs/local.mk: Likewise.
* doc/emacs.texi: Likewise.
* doc/guix.texi: Remove cross-references to Emacs nodes.
(Package Management): Mention 'emacs-guix' package.
* doc/contributing.texi (The Perfect Setup): Remove the reference.
* doc/htmlxref.cnf: Add 'emacs-guix' URL.
* Makefile.am: Remove Emacs stuff.
* configure.ac: Likewise.
* gnu/packages/package-management.scm (guix-0.12.0)[native-inputs]:
Remove "emacs".
[propagated-inputs]: Remove "geiser" and "emacs-magit-popup".
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
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* gnu/packages/statistics.scm (r-statmod): New variable.
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* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
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* gnu/packages/statistics.scm (r-sourcetools): New variable.
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* gnu/packages/statistics.scm (r-beeswarm): New variable.
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* gnu/packages/statistics.scm (r-vipor): New variable.
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* gnu/packages/image.scm (libpng-1.2): Update to 1.2.57.
[replacement]: New field.
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* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng/fixed): New variable.
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Fixes <http://bugs.gnu.org/25242>.
Reported by Leo Famulari <leo@famulari.name>.
The regression was introduced in 94d92c7796a3dd50c27d532315f7d497ac99f08e.
* nix/libstore/build.cc (DerivationGoal::startBuilder): Set 'useChroot'
as a function 'of isBuiltin(drv)'.
(DerivationGoal::runChild): Use 'useChroot' instead of
'useChroot && !isBuiltin(drv)'.
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