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2016-04-06gnu: Add r-variantannotation.Roel Janssen
* gnu/packages/bioinformatics.scm (r-variantannotation): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-06gnu: pcre: Fix CVE-2016-3191.Ludovic Courtès
* gnu/packages/pcre.scm (pcre)[replacement]: New field. (pcre-fixed): New variable. * gnu/packages/patches/pcre-CVE-2016-3191.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
2016-04-06doc: Update reproducible-builds.org URL.Ludovic Courtès
* doc/guix.texi (Invoking guix challenge): Update reproducible-builds URL.
2016-04-06doc: Use more https URLs.Ludovic Courtès
* doc/guix.texi (Invoking guix challenge): Use https instead of http.
2016-04-06challenge: Really exit with non-zero upon hash mismatch.Ludovic Courtès
Reported by John Darrington. * guix/scripts/challenge.scm (guix-challenge): Add an explicit 'exit' call when ISSUES is empty. * scripts/guix.in: Add comment about 'exit'. * doc/guix.texi (Invoking guix challenge): Mention the behavior and exit code.
2016-04-06doc: Update use of old "PACKAGE-VERSION" syntax.Ludovic Courtès
* doc/guix.texi (Invoking guix edit): Use the @ syntax for versions.
2016-04-06gnu: abiword: Update to 3.0.1.Efraim Flashner
* gnu/packages/abiword.scm (abiword): Update to 3.0.1. [source]: Remove 4 patches. [arguments]: Disable tests. [inputs]: Add libxslt, replace gtk+-2 with gtk+. [native-inputs]: Add libtool. * gnu/packages/patches/abiword-link-plugins-against-backend.patch, gnu/packages/patches/abiword-no-include-glib-internal-headers.patch, gnu/packages/patches/abiword-pass-no-undefined-to-linker.patch, gnu/packages/patches/abiword-use-proper-png-api.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove them.
2016-04-06gnu: hexchat: Update to 2.12.0.Leo Famulari
* gnu/packages/messaging.scm (hexchat): Update to 2.12.0.
2016-04-06gnu: Add wmcpuload.Kei Yamashita
* gnu/packages/gnustep.scm (wmcpuload): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-06gnu: Add python-pkgconfig.Andreas Enge
* gnu/packages/python.scm (python-pkgconfig, python2-pkgconfig): New variables.
2016-04-06gnu: Add progress.Roel Janssen
* gnu/packages/admin.scm (progress): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-04-06gnu: Add wmnd.Kei Yamashita
* gnu/packages/gnustep.scm (wmnd): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-04-06gnu: Add singular.Andreas Enge
* gnu/packages/algebra.scm (singular): New variable.
2016-04-05gnu: Add iodine.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (iodine): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-04-05gnu: Add cddlib.Andreas Enge
* gnu/packages/maths.scm (cddlib): New variable.
2016-04-05gnu: Add 4ti2.Andreas Enge
* gnu/packages/maths.scm (4ti2): New variable.
2016-04-05gnu: Add NTL.Andreas Enge
* gnu/packages/algebra.scm (ntl): New variable.
2016-04-05gnu: mercurial: Update to 3.7.3 [fixes CVE-2016-{3068,3069,3630}].Efraim Flashner
* gnu/packages/version-control.scm (mercurial): Update to 3.7.3.
2016-04-05gnu: python-futures: Remove variable.Efraim Flashner
* gnu/packages/python.scm (python-futures): Remove it.
2016-04-05gnu: git-annex-remote-hubic: Change to python2.Efraim Flashner
* gnu/packages/version-control.scm (git-annex-remote-hubic) [arguments]: Build with python2.
2016-04-05gnu: Add wmbattery.Kei Yamashita
* gnu/packages/gnustep.scm (wmbattery): New variable. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-04-05gnu: vcftools: Update to 0.1.14.Roel Janssen
* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.14. [arguments]: Do not modify phases as it is not needed anymore. [native-inputs]: Add 'pkg-config'. [home-page]: Update to new location. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-04-05gnu: mutt: Update to 1.6.0.Efraim Flashner
* gnu/packages/mail.scm (mutt): Update to 1.6.0.
2016-04-05gnu: vim: Use 'modify-phases'.Efraim Flashner
* gnu/packages/vim.scm (vim)[arguments]: Use 'modify-phases' syntax.
2016-04-05gnu: mpd: Update to 0.19.14.Leo Famulari
* gnu/packages/mpd.scm (mpd): Update to 0.19.14.
2016-04-04gnu: libextractor: Improve ffmpeg-3 patch.Mark H Weaver
* gnu/packages/patches/libextractor-ffmpeg-3.patch: Add additional fixes and harmonize with patches in upstream repository.
2016-04-04gnu: libextractor: Add patch to fix build with ffmpeg-3.Mark H Weaver
* gnu/packages/patches/libextractor-ffmpeg-3.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnunet.scm (libextractor)[source]: Add patch.
2016-04-04system: Define 'GTK_DATA_PREFIX' globally.Ludovic Courtès
Fixes <http://bugs.gnu.org/23200>. Reported by Chris Marusich <cmmarusich@gmail.com>. * gnu/system.scm (operating-system-environment-variables): Add 'GTK_DATA_PREFIX'.
2016-04-04CoC: Clarify which project we're talking about.Ludovic Courtès
* CODE-OF-CONDUCT: Define "project" and "project maintainer" as suggested by rms.
2016-04-04gnu: mplayer: Update to 1.3.0.Raymond Nicholson
* gnu/packages/video.scm (mplayer): Update to 1.3.0.
2016-04-04gnu: gst-libav: Update to 1.8.0.Raymond Nicholson
* gnu/packages/ffmpeg.scm (gst-libav): Update to 1.8.0.
2016-04-04gnu: global: Update to 6.5.4.Efraim Flashner
* gnu/packages/code.scm (global): Update to 6.5.4.
2016-04-04gnu: network-manager: Update to 1.0.12.Mark H Weaver
* gnu/packages/gnome.scm (network-manager): Update to 1.0.12.
2016-04-04gnu: scheme48: Update to 1.9.2.Efraim Flashner
* gnu/packages/scheme.scm (scheme48): Update to 1.9.2.
2016-04-04emacs: Speed up starting the REPL.Alex Kost
Delay initializing variables. * emacs/guix-main.scm: (%packages): Rename to... (%package-vhash): ... this. Delay setting the value. (package-vhash): New procedure (wrapper for '%package-vhash'). (%package-table): Delay setting the value. (package-table): New procedure (wrapper for '%package-table'). (package-by-address, packages-by-name+version): Use wrappers.
2016-04-04emacs: Use (guix scripts lint) only when needed.Alex Kost
* emacs/guix-main.scm: Do not use (guix scripts pull) module. (lint-checker-names): Adjust to use it.
2016-04-04emacs: Remove unused module.Alex Kost
This is a followup to commit c67e344f21fda2bf5a2a377a34d4749a1c7e7c9c. * emacs/guix-main.scm: Do not use (guix scripts pull).
2016-04-04emacs: Stylistic improvements in guile code.Alex Kost
* emacs/guix-main.scm (package-unique?): Use 'match' instead of 'cdr'. (package-by-address): Likewise.
2016-04-04emacs: Use 'build-and-use-profile' from (guix scripts package).Alex Kost
* guix/scripts/package.scm: Export 'build-and-use-profile'. * emacs/guix-main.scm (process-package-actions): Use it.
2016-04-04gnu: python-pyopenssl: Update to 16.0.0.Leo Famulari
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 16.0.0. [arguments]: Remove field.
2016-04-04gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.1.Leo Famulari
These packages should be udpated together. * gnu/packages/python.scm (python-cryptography): Update to 1.3.1. (python-cryptogprahy-vectors): Update to 1.3.1.
2016-04-04gnu: python-pytest: Update to 2.7.3.Leo Famulari
* gnu/packages/python.scm (python-pytest, python2-pytest): Update to 2.7.3.
2016-04-04gnu: i3-wm: Update to 4.12.Efraim Flashner
* gnu/packages/wm.scm (13-wm): Update to 4.12.
2016-04-04gnu: Move pspp from maths.scm to statistics.scmJohn Darrington
* gnu/packages/maths.scm (pspp): Deleted. * gnu/packages/statistics.scm (pspp): New variable.
2016-04-04gnu: irssi: Update to 0.8.19.Efraim Flashner
* gnu/packages/irc.scm (irssi): Update to 0.8.19.
2016-04-03gnu: libpsl: Update to 0.13.0.Efraim Flashner
* gnu/packages/web.scm (libpsl): Update to 0.13.0. [arguments]: Remove bootstrap phase. [inputs]: Add python-2. [native-inputs]: Remove autoconf, automake, gettext, which, libtool, pkg-config.
2016-04-03gnu: libsrtp: Update to 1.5.4 [fixes CVE-2015-6360].Leo Famulari
* gnu/packages/telephony.scm (libsrtp): Update to 1.5.4.
2016-04-03gnu: check: Update home page URL.Jochem Raat
* gnu/packages/check.scm (check)[home-page]: Update to new location. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-04-03gnu: magit: Update to 2.6.0.Alex Kost
* gnu/packages/emacs.scm (magit): Update to 2.6.0.
2016-04-03gnu: ffmpeg: Update to 3.0.0.rain1
* gnu/packages/video.scm (ffmpeg): Update to 3.0.0. [inputs]: Remove libquvi. [arguments]: Remove '--enable-libquvi" configure flag, rename mipsdspri1 flag to mipsdsp. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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