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2022-12-20WIP wip-rRicardo Wurmus
2022-12-20gnu: r-kegggraph: Update to 1.58.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.58.3.
2022-12-20gnu: r-scran: Update to 1.26.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.26.1.
2022-12-20gnu: r-scuttle: Update to 1.8.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.3.
2022-12-20gnu: r-chromvar: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.20.1.
2022-12-20gnu: r-s4vectors: Update to 0.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.36.1.
2022-12-20gnu: r-preprocesscore: Update to 1.60.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.60.1.
2022-12-20gnu: r-biocviews: Update to 1.66.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.1. [native-inputs]: Add r-knitr.
2022-12-20gnu: r-rcistarget: Update to 1.18.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.18.2.
2022-12-20gnu: r-opencyto: Update to 2.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.10.1. [propagated-inputs]: Remove r-clue, r-flowstats, r-gtools, r-ks, r-lattice, r-mass, r-plyr, r-r-utils, r-rcpp, and r-rrcov; add r-bh and r-cpp11.
2022-12-20gnu: r-ggcyto: Update to 1.26.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.26.4.
2022-12-20gnu: r-rsubread: Update to 2.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.2.
2022-12-20gnu: r-iclusterplus: Update to 1.34.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.2.
2022-12-20gnu: r-aucell: Update to 1.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.20.2. [propagated-inputs]: Add r-matrix.
2022-12-20gnu: r-clusterexperiment: Update to 2.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.1.
2022-12-20gnu: r-enrichplot: Update to 1.18.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.18.3.
2022-12-20gnu: r-sigpathway: Update to 1.66.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.1.
2022-12-20gnu: r-linnorm: Update to 2.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.1.
2022-12-20gnu: r-lpsymphony: Update to 1.26.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.26.2.
2022-12-20gnu: r-dnacopy: Update to 1.72.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.72.2.
2022-12-20gnu: r-glmgampoi: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.1.
2022-12-20gnu: r-diffbind: Update to 3.8.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.3.
2022-12-20gnu: r-oligo: Update to 1.62.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.62.1.
2022-12-20gnu: r-tximport: Update to 1.26.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.26.1.
2022-12-20gnu: r-scmap: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.1.
2022-12-20gnu: r-lfa: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.1.
2022-12-20gnu: r-impute: Update to 1.72.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-impute): Update to 1.72.2.
2022-12-20gnu: r-genomicranges: Update to 1.50.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.50.2.
2022-12-20gnu: r-genomicfeatures: Update to 1.50.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.50.3.
2022-12-20gnu: r-genomeinfodb: Update to 1.34.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.4.
2022-12-20gnu: r-genefilter: Update to 1.80.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.80.2.
2022-12-20gnu: r-edger: Update to 3.40.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 3.40.1.
2022-12-20gnu: r-deseq2: Update to 1.38.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.38.2. [propagated-inputs]: Remove r-genefilter; add r-matrixstats.
2022-12-20gnu: r-biocparallel: Update to 1.32.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.4.
2022-12-20gnu: r-deconvr: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.3. [propagated-inputs]: Add r-minfi.
2022-12-20gnu: r-damefinder: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.10.1.
2022-12-20gnu: r-bandits: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.1.
2022-12-20gnu: r-bambu: Update to 3.0.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.5.
2022-12-20gnu: r-ancombc: Update to 2.0.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.2.
2022-12-19gnu: linux-libre 5.4: Update to 5.4.228.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.228. (linux-libre-5.4-pristine-source): Update hash.
2022-12-19gnu: linux-libre 5.10: Update to 5.10.160.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.160. (linux-libre-5.10-pristine-source): Update hash.
2022-12-19gnu: linux-libre 5.15: Update to 5.15.84.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.84. (linux-libre-5.15-pristine-source): Update hash.
2022-12-19gnu: linux-libre: Update to 6.0.14.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.14. (linux-libre-6.0-pristine-source): Update hash.
2022-12-19gnu: QEMU: Unbundle SeaBIOS.Marius Bakke
* gnu/packages/virtualization.scm (qemu)[source](snippet): Delete SeaBIOS ROMs and source code. [arguments]: Add replace-firmwares and delete-firmwares phases. [inputs]: Add SEABIOS. [native-inputs]: Add ACPICA. While here, sort inputs.
2022-12-19gnu: SeaBIOS: Prettify version string.Marius Bakke
* gnu/packages/firmware.scm (seabios)[arguments]: Display version as "1.16.1/GNU Guix" instead of "1.16.1-guix".
2022-12-19gnu: SeaBIOS: Build in parallel.Marius Bakke
* gnu/packages/firmware.scm (seabios)[arguments]: Use N-PAR-FOR-EACH to build the various targets.
2022-12-19gnu: SeaBIOS: Build more BIOSen.Marius Bakke
* gnu/packages/firmware.scm (seabios)[arguments]: Build the "128k" and "microvm" BIOSen expected by QEMU. Fix installation of vgabios.
2022-12-19gnu: SeaBIOS: Remove pre-generated code.Marius Bakke
* gnu/packages/firmware.scm (seabios)[source](modules, snippet): New fields. [native-inputs]: Add ACPICA. [arguments]: Add build-iasl phase.
2022-12-19gnu: SeaBIOS: Use G-expression.Marius Bakke
* gnu/packages/firmware.scm (seabios)[arguments]: Rewrite as gexp.
2022-12-19gnu: cdo: Update to 2.1.0.Roman Scherer
* gnu/packages/geo.scm (cdo): Update to 2.1.0. [inputs]: Add curl, eccodes, fftw, hdf5, libxml2, proj and udunits. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
generated by cgit-pink 1.4.1 (git 2.36.1) at 2025-02-16 19:45:39 +0000