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2019-03-27gnu: r-geometry: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-geometry): Update to 0.4.1. [propagated-inputs]: Fix typo.
2019-03-27gnu: r-feather: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-feather): Update to 0.3.3.
2019-03-27gnu: Add emacs-relint.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-relint): New variable.
2019-03-27gnu: Add emacs-zones.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-zones): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2019-03-27gnu: Add r-clusterprofiler.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): New variable.
2019-03-27gnu: Add r-enrichplot.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enrichplot): New variable.
2019-03-27gnu: Add r-dose.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): New variable.
2019-03-27gnu: Add r-ggraph.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggraph): New variable.
2019-03-27gnu: Add r-europepmc.Ricardo Wurmus
* gnu/packages/cran.scm (r-europepmc): New variable.
2019-03-27gnu: Add r-ggforce.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggforce): New variable.
2019-03-27gnu: Add r-urltools.Ricardo Wurmus
* gnu/packages/cran.scm (r-urltools): New variable.
2019-03-27gnu: Add r-polyclip.Ricardo Wurmus
* gnu/packages/cran.scm (r-polyclip): New variable.
2019-03-27gnu: Add r-tweenr.Ricardo Wurmus
* gnu/packages/cran.scm (r-tweenr): New variable.
2019-03-27gnu: Add r-triebeard.Ricardo Wurmus
* gnu/packages/cran.scm (r-triebeard): New variable.
2019-03-27gnu: Add r-ggplotify.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggplotify): New variable.
2019-03-27gnu: Add r-farver.Ricardo Wurmus
* gnu/packages/cran.scm (r-farver): New variable.
2019-03-27gnu: Add r-gridgraphics.Ricardo Wurmus
* gnu/packages/cran.scm (r-gridgraphics): New variable.
2019-03-27gnu: Add r-do-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-do-db): New variable.
2019-03-27gnu: Add r-fgsea.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
2019-03-27gnu: Add r-msigdbr.Ricardo Wurmus
* gnu/packages/cran.scm (r-msigdbr): New variable.
2019-03-27gnu: Add r-xkcd.Ricardo Wurmus
* gnu/packages/cran.scm (r-xkcd): New variable.
2019-03-27gnu: Add r-extrafont.Ricardo Wurmus
* gnu/packages/cran.scm (r-extrafont): New variable.
2019-03-27gnu: Add r-extrafontdb.Ricardo Wurmus
* gnu/packages/cran.scm (r-extrafontdb): New variable.
2019-03-27gnu: Add r-rttf2pt1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rttf2pt1): New variable.
2019-03-27gnu: emacs-debbugs: Update to 0.17.Ludovic Courtès
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.17.
2019-03-27refresh: Update the source code URL.Ludovic Courtès
Reported by Tobias Geerinckx-Rice <me@tobias.gr> in <https://bugs.gnu.org/35010>. * guix/upstream.scm (update-package-source): Take 'source' instead of 'version' as the second argument. [update-expression]: Change to take 'replacements', a list of replacement pairs. Compute OLD-URL and NEW-URL and replace the dirname of the OLD-URL with that of NEW-URL. * guix/scripts/refresh.scm (update-package): Adjust call to 'update-package-source' accordingly.
2019-03-27upstream: 'package-update' returns the <upstream-source> object.Ludovic Courtès
Fixes a regression introduced in abd4d6b33dba4de228e90ad15a8efb456fcf7b6e, where CHANGES would no longer be a thunk. Reported by Ricardo Wurmus. * guix/upstream.scm (package-update/url-fetch): Return SOURCE as the third value instead of CHANGES. * guix/scripts/refresh.scm (update-package): Adjust accordingly.
2019-03-27gnu: Add r-xyz.Ricardo Wurmus
* gnu/packages/cran.scm (r-xyz): New variable.
2019-03-27scripts: Skip 'guix pull' suggestion when running code from a checkout.Ludovic Courtès
* guix/scripts.scm (warn-about-old-distro): Do not warn when GUIX_UNINSTALLED is set.
2019-03-27vm: Ask QEMU for more RAM in the VM that makes ISO9660 images.Ludovic Courtès
* gnu/system/vm.scm (iso9660-image): Pass #:memory-size to 'expression->derivation-in-linux-vm'.
2019-03-27services: Deprecate 'xfce-desktop-service'.Ludovic Courtès
* gnu/services/desktop.scm (xfce-desktop-service-type)[default-value] [description]: New fields. (xfce-desktop-service): Deprecate. * gnu/system/examples/desktop.tmpl: Use the (service …) form. * gnu/installer/services.scm (%desktop-environments): Add TODO comment. * doc/guix.texi (Desktop Services): Adjust accordingly, and fix spelling of "Xfce" throughout.
2019-03-27services: Deprecate 'gnome-desktop-service'.Ludovic Courtès
* gnu/services/desktop.scm (gnome-desktop-service-type)[default-value]: New field. (gnome-desktop-service): Deprecate. * gnu/installer/services.scm (%desktop-environments): Use the (service …) form for GNOME. * gnu/system/examples/desktop.tmpl: Likewise. * doc/guix.texi (Desktop Services): Adjust accordingly.
2019-03-27installer: Use the (service …) form for MATE.Ludovic Courtès
* gnu/installer/services.scm (%desktop-environments): Use 'mate-desktop-service-type' for MATE.
2019-03-27installer: Ask for confirmation before formatting partitions.Ludovic Courtès
* gnu/installer/newt/page.scm (run-confirmation-page): New procedure. * gnu/installer/newt/partition.scm (draw-formatting-page): Call it.
2019-03-27installer: Produce an 'initrd-modules' field if needed.Ludovic Courtès
* gnu/installer/parted.scm (root-user-partition?): New procedure. (bootloader-configuration): Use it. (user-partition-missing-modules, initrd-configuration): New procedures. (user-partitions->configuration): Call 'initrd-configuration'.o * gnu/installer.scm (not-config?): Rename to... (module-to-import?): ... this. Add cases to exclude non-installer and non-build (gnu …) modules. (installer-program)[installer-builder]: Add GUIX to the extension list.
2019-03-27installer: Emit 'bootloader' field before 'swap-devices'.Ludovic Courtès
* gnu/installer/parted.scm (user-partitions->configuration): Move 'bootloader' section above 'swap-devices'.
2019-03-27gnu: Add emacs-webfeeder.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-webfeeder): New variable.
2019-03-27gnu: trim-galore: Add pigz.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (trim-galore)[inputs]: Add pigz. [arguments]: Embed reference to pigz.
2019-03-27gnu: trim-galore: Fix test for Python.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (trim-galore)[arguments]: Replace "configure" phase to skip ill-advised test for Python.
2019-03-27gnu: hdf-java: Adjust indentation.Ricardo Wurmus
* gnu/packages/maths.scm (hdf-java): Adjust indentation.
2019-03-27gnu: hdf-java: Fix build.Ricardo Wurmus
* gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake; substitute embedded hdf5 version number.
2019-03-27gnu: hdf-java: Use INVOKE.Ricardo Wurmus
* gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from build phases.
2019-03-27gnu: r-rhdf5lib: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.3.
2019-03-27gnu: r-genomicfeatures: Update to 1.34.7.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.7.
2019-03-27gnu: r-hdf5r: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-hdf5r): Update to 1.1.1.
2019-03-27gnu: r-caret: Update to 6.0-82.Ricardo Wurmus
* gnu/packages/statistics.scm (r-caret): Update to 6.0-82.
2019-03-27gnu: r-gtable: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.0.
2019-03-27gnu: grantlee: Delete broken tests.Ricardo Wurmus
* gnu/packages/qt.scm (grantlee)[arguments]: Add phase "delete-broken-tests".
2019-03-26gnu: Add adanaxis-mush and adanaxisgpl.Kei Kebreau
* gnu/packages/games.scm (adanaxis-mush, adanaxisgpl): New variables.
2019-03-27gnu: qjackctl: Re-enable xunique.Pierre Langlois
Version 0.5.6 of qjackctl appears to have fixed the xunique bug that was causing X hanging when using tiling window managers. See https://github.com/rncbc/qjackctl/blob/d54a1da43fa197da04d676a110f36a1d4c062252/ChangeLog#L9 * gnu/packages/audio.scm (qjackctl)[arguments]: Remove "--disable-xunique" from configure-flags. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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