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2016-12-29gnu: r-yaml: Update to 2.1.14.Ricardo Wurmus
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
2016-12-29gnu: r-htmlwidgets: Update to 0.8.Ricardo Wurmus
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.8.
2016-12-29gnu: r-curl: Update to 2.3.Ricardo Wurmus
* gnu/packages/web.scm (r-curl): Update to 2.3.
2016-12-29gnu: r-servr: Update to 0.5.Ricardo Wurmus
* gnu/packages/web.scm (r-servr): Update to 0.5.
2016-12-29Remove Emacs interface.Alex Kost
* emacs/guix-about.el: Remove file. * emacs/guix-backend.el: Likewise. * emacs/guix-base.el: Likewise. * emacs/guix-buffer.el: Likewise. * emacs/guix-build-log.el: Likewise. * emacs/guix-command.el: Likewise. * emacs/guix-config.el.in: Likewise. * emacs/guix-devel.el: Likewise. * emacs/guix-entry.el: Likewise. * emacs/guix-external.el: Likewise. * emacs/guix-geiser.el: Likewise. * emacs/guix-guile.el: Likewise. * emacs/guix-help-vars.el: Likewise. * emacs/guix-helper.scm.in: Likewise. * emacs/guix-history.el: Likewise. * emacs/guix-hydra-build.el: Likewise. * emacs/guix-hydra-jobset.el: Likewise. * emacs/guix-hydra.el: Likewise. * emacs/guix-info.el: Likewise. * emacs/guix-init.el: Likewise. * emacs/guix-license.el: Likewise. * emacs/guix-list.el: Likewise. * emacs/guix-location.el: Likewise. * emacs/guix-main.scm: Likewise. * emacs/guix-messages.el: Likewise. * emacs/guix-pcomplete.el: Likewise. * emacs/guix-popup.el: Likewise. * emacs/guix-prettify.el: Likewise. * emacs/guix-profiles.el: Likewise. * emacs/guix-read.el: Likewise. * emacs/guix-ui-generation.el: Likewise. * emacs/guix-ui-license.el: Likewise. * emacs/guix-ui-location.el: Likewise. * emacs/guix-ui-package.el: Likewise. * emacs/guix-ui-system-generation.el: Likewise. * emacs/guix-ui.el: Likewise. * emacs/guix-utils.el: Likewise. * emacs/local.mk: Likewise. * doc/emacs.texi: Likewise. * doc/guix.texi: Remove cross-references to Emacs nodes. (Package Management): Mention 'emacs-guix' package. * doc/contributing.texi (The Perfect Setup): Remove the reference. * doc/htmlxref.cnf: Add 'emacs-guix' URL. * Makefile.am: Remove Emacs stuff. * configure.ac: Likewise. * gnu/packages/package-management.scm (guix-0.12.0)[native-inputs]: Remove "emacs". [propagated-inputs]: Remove "geiser" and "emacs-magit-popup". Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29gnu: r-colorspace: Update to 1.3-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
2016-12-29gnu: Add r-statmod.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-statmod): New variable.
2016-12-29gnu: Add r-ggbeeswarm.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
2016-12-29gnu: Add r-sourcetools.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-sourcetools): New variable.
2016-12-29gnu: Add r-beeswarm.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-beeswarm): New variable.
2016-12-29gnu: Add r-vipor.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-vipor): New variable.
2016-12-29gnu: libpng-1.2: Update to 1.2.57 [security update].Leo Famulari
* gnu/packages/image.scm (libpng-1.2): Update to 1.2.57. [replacement]: New field.
2016-12-29gnu: libpng: Fix a null pointer dereference [fixes security issue].Leo Famulari
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image.scm (libpng)[replacement]: New field. (libpng/fixed): New variable.
2016-12-29daemon: Allow fixed-output derivation builds with TMPDIR set.Ludovic Courtès
Fixes <http://bugs.gnu.org/25242>. Reported by Leo Famulari <leo@famulari.name>. The regression was introduced in 94d92c7796a3dd50c27d532315f7d497ac99f08e. * nix/libstore/build.cc (DerivationGoal::startBuilder): Set 'useChroot' as a function 'of isBuiltin(drv)'. (DerivationGoal::runChild): Use 'useChroot' instead of 'useChroot && !isBuiltin(drv)'.
2016-12-29import: elpa: Import dependencies as propagated-inputsCarlo Zancanaro
* guix/import/elpa.scm (elpa-package->sexp): Import dependencies as propagated-inputs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29import: elpa: Fix call-with-downloaded-fileCarlo Zancanaro
* guix/import/elpa.scm (call-with-downloaded-file): Make function behaviour match documentation string. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29gnu: mpd: Update to 0.19.21.Leo Famulari
* gnu/packages/mpd.scm (mpd): Update to 0.19.21.
2016-12-29gnu: rustc: Update to 1.14.0.ng0
* gnu/packages/rust.scm (rustc): Update to 1.14.0. %rust-bootstrap-binaries: Update to 1.13.0. Signed-off-by: David Craven <david@craven.ch>
2016-12-29gnu: mu: Avoid bootstrapping.Ricardo Wurmus
* gnu/packages/mail.scm (mu)[arguments]: Rename "patch-configure.ac" to "patch-configure" and only patch "configure" script; remove "autoreconf" phase. [native-inputs]: Remove "autoconf", "automake", "libtool", and "texinfo".
2016-12-29gnu: mu: Update to 0.9.18.Ricardo Wurmus
* gnu/packages/mail.scm (mu): Update to 0.9.18.
2016-12-29gnu: perl-zip: Update to 1.59.Tobias Geerinckx-Rice
* gnu/packages/zip.scm (perl-zip): Update to 1.59.
2016-12-28gnu: Add python-trollius-redis.ng0
* gnu/packages/python.scm (python-trollius-redis, python2-trollius-redis): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28gnu: Add python-straight-plugin.ng0
* gnu/packages/python.scm (python-straight-plugin, python2-straight-plugins): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28gnu: Add python-openid-teams.ng0
* gnu/packages/python.scm (python-openid-teams, python2-openid-teams): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28gnu: Add python-openid-cla.ng0
* gnu/packages/python.scm (python-openid-cla, python2-openid-cla): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28gnu: Add python2-openid.ng0
* gnu/packages/python.scm (python2-openid): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28gnu: Add python-pygit2.ng0
* gnu/packages/python.scm (python-pygit2, python2-pygit2): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28gnu: Add python-munch.ng0
* gnu/packages/python.scm (python-munch, python2-munch): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28gnu: Add python-kitchen.ng0
* gnu/packages/python.scm (python-kitchen, python2-kitchen): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28gnu: Add python-flask-multistatic.ng0
* gnu/packages/python.scm (python-flask-multistatic, python2-flask-multistatic): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-28gnu: Add python-flask-wtf.ng0
* gnu/packages/python.scm (python-flask-wtf, python2-flask-wtf): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-29gnu: xonsh: Update to 0.5.1.Tobias Geerinckx-Rice
* gnu/packages/shells.scm (xonsh): Update to 0.5.1.
2016-12-29gnu: python-prompt-toolkit: Update to 1.0.9.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.9.
2016-12-29gnu: python-markdown: Update to 2.6.7.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-markdown): Update to 2.6.7.
2016-12-29gnu: python-numexpr: Update to 2.6.1.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-numexpr): Update to 2.6.1.
2016-12-29gnu: python-babel: Update to 2.3.4.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-babel): Update to 2.3.4.
2016-12-28gnu: glibc-hurd: Update to 2.23.Manolis Ragkousis
* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 2.23.
2016-12-28gnu: rofi: Update to 1.3.0.Marius Bakke
* gnu/packages/xdisorg.scm (rofi): Update to 1.3.0.
2016-12-28gnu: znc: Update to 1.6.4.Tobias Geerinckx-Rice
* gnu/packages/messaging.scm (znc): Update to 1.6.4.
2016-12-27gnu: wireshark: Update to 2.2.3.Nicolas Goaziou
* gnu/packages/networking.scm (wireshark): Update to 2.2.3. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-27gnu: emacs-org: Update to 20161224.Nicolas Goaziou
* gnu/packages/emacs.scm (emacs-org): Update to 20161224. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-27gnu: Add httpstat.Stefan Reichoer
* gnu/packages/networking.scm (httpstat): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-27gnu: Add python-netcdf4.Thomas Danckaert
* gnu/packages/python.scm (python-netcdf4, python2-netcdf4): New variables. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-27gnu: r-rcas: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.1.1. [propagated-inputs]: Add plotrix.
2016-12-26gnu: python-pycrypto: Add TODO "removal" comment.Leo Famulari
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto): Add comment.
2016-12-26gnu: python-stem: Don't use python-pycrypto.Leo Famulari
Python-pycrypto is an optional dependency of python-stem. Python-pycrypto is unmaintained [0] and contains an exploitable buffer overflow bug [1]. [0] https://github.com/dlitz/pycrypto/issues/173 [1] https://github.com/dlitz/pycrypto/issues/176 * gnu/packages/python.scm (python-stem, python2-stem)[propagated-inputs]: Remove python-pycrypto.
2016-12-26gnu: awesome: Update to 4.0.ng0
* gnu/packages/wm.scm (awesome): Update to 4.0. [source]: Adjust URL. [inputs]: Add xcb-util-xrm and libxkbcommon. * gnu/packages/patches/awesome-reproducible-png.patch: Adjust patch. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-12-27gnu: diamond: Update to 0.8.30.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.30.
2016-12-26gnu: python-stem: Update to 1.5.3.Leo Famulari
* gnu/packages/python.scm (python-stem, python2-stem): Update to 1.5.3. [source]: Update URL.
2016-12-26gnu: ruby-minitest: Update to 5.10.1.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.1.
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