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2018-08-25gnu: Add avogadro.Kei Kebreau
* gnu/packages/chemistry.scm (avogadro): New variable. * gnu/packages/patches/avogadro-boost148.patch, gnu/packages/patches/avogadro-eigen3-update.patch, gnu/packages/patches/avogadro-python-eigen-lib.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
2018-08-25gnu: libx11: Replace with 1.6.6 [security fixes].Marius Bakke
This fixes CVE-2018-14599, CVE-2018-14600, and CVE-2018-14598. * gnu/packages/xorg.scm (libx11)[replacement]: New field. (libx11-1.6.6): New public variable.
2018-08-25gnu: dante: Disable preloading to make 'sockd' work.宋文武
* gnu/packages/networking.scm (dante)[arguments]: Pass '--disable-preload' to #:configure-flags.
2018-08-24gnu: OpenSSH: Update to 7.8p1.Leo Famulari
* gnu/packages/ssh.scm (openssh): Update to 7.8p1. [source]: Remove 'openssh-CVE-2018-15473.patch'. * gnu/packages/patches/openssh-CVE-2018-15473.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-24nls: Update 'de' translation.Leo Famulari
2018-08-24import: cpan: Adjust test to new URL.Ludovic Courtès
This is a followup to 9aba9b127840a116c806a2cbac901cf8077abcd0. * tests/cpan.scm ("cpan->guix-package"): Adjust 'home-page' URL.
2018-08-24grafts: Add (guix build debug-link) and use it.Ludovic Courtès
Fixes <https://bugs.gnu.org/19973>. Reported by Mark H Weaver <mhw@netris.org>. * guix/build/debug-link.scm: New file. * guix/build/graft.scm (%graft-hooks): New variable. (graft): Add #:hooks and honor it. * guix/grafts.scm (graft-derivation/shallow): Add (guix build debug-link) and (guix elf) to #:modules. * tests/debug-link.scm: New file. * Makefile.am (MODULES): Add guix/build/debug-link.scm. (SCM_TESTS): Add tests/debug-link.scm.
2018-08-24grafts: Add high-level 'graft' procedure on the build side.Ludovic Courtès
* guix/build/graft.scm (graft): New procedure. * guix/grafts.scm (graft-derivation/shallow)[build]: Use it instead of inline code.
2018-08-24gnu: font-gnu-unifont: Update to 11.0.02.Ludovic Courtès
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 11.0.02. [arguments]: Adjust code to install 'unifont.info.gz' in 'install' phase.
2018-08-24gnu: gdb: Update to 8.1.1.Ludovic Courtès
* gnu/packages/gdb.scm (gdb): Update to 8.1.1.
2018-08-24gnu: Add find-circ.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (find-circ): New variable.
2018-08-24gnu: r-catools: Update to 1.17.1.1.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.1.
2018-08-24gnu: keepassxc: Update to 2.3.4.Tobias Geerinckx-Rice
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.4. [arguments]: Remove obsolete ‘patch-sources’ phase.
2018-08-24gnu: capstone: Update to 3.0.5.Tobias Geerinckx-Rice
* gnu/packages/engineering.scm (capstone): Update to 3.0.5. [arguments]: Set cstool's LDFLAGS in the environment instead of SUBSTITUTE*ing the Makefile.
2018-08-24gnu: r-trimcluster: Update to 0.1-2.1.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-trimcluster): Update to 0.1-2.1.
2018-08-24gnu: r-synchronicity: Update to 1.3.5.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.5.
2018-08-24gnu: guile-lib: Update to 0.2.6.1.Tobias Geerinckx-Rice
* gnu/packages/guile.scm (guile-lib): Update to 0.2.6.1. [source]: Remove obsolete snippet.
2018-08-24gnu: tuxguitar: Update to 1.5.2.Tobias Geerinckx-Rice
* gnu/packages/music.scm (tuxguitar): Update to 1.5.2. [source]: Remove obsolete snippet.
2018-08-24gnu: libgig: Update to 4.1.0.Tobias Geerinckx-Rice
* gnu/packages/music.scm (libgig): Update to 4.1.0.
2018-08-24gnu: denemo: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/music.scm (denemo)[arguments]: Substitute INVOKE for SYSTEM*.
2018-08-24gnu: ncmpc: Update to 0.29.Tobias Geerinckx-Rice
* gnu/packages/mpd.scm (ncmpc): Update to 0.29. [build-system]: Switch to Meson. [arguments]: Find ncurses.h. [native-inputs]: Add gettext.
2018-08-24gnu: parallel: Update to 20180822.Ludovic Courtès
* gnu/packages/parallel.scm (parallel): Update to 20180822.
2018-08-24gnu: boost: Move 1.59.0 definition to boost.scm.Ludovic Courtès
Fixes a regression introduced in commit 7cbf06d8c2935abfc6c688cf3f9b99e0e5393960 where the top-level code of these two modules would depend on each other, leading to "boost: unbound variable" kind of errors in some circumstances. * gnu/packages/databases.scm (boost-for-mysql): Move to... * gnu/packages/boost.scm (boost-for-mysql): ... here. Make public and add 'properties' field.
2018-08-23gnu: r-devtools: Update to 1.13.6.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.6.
2018-08-23gnu: drumkv1: Update to 0.9.2.Tobias Geerinckx-Rice
* gnu/packages/music.scm (drumkv1): Update to 0.9.2.
2018-08-23gnu: synthv1: Update to 0.9.2.Tobias Geerinckx-Rice
* gnu/packages/music.scm (synthv1): Update to 0.9.2.
2018-08-23gnu: samplv1: Update to 0.9.2.Tobias Geerinckx-Rice
* gnu/packages/music.scm (samplv1): Update to 0.9.2.
2018-08-23gnu: padthv1: Update to 0.9.2.Tobias Geerinckx-Rice
* gnu/packages/music.scm (padthv1): Update to 0.9.2.
2018-08-23gnu: Update home pages for the V1 synth family.Tobias Geerinckx-Rice
* gnu/packages/music.scm (synthv1, drumkv1, samplv1, padthv1) [home-page]: Update & use HTTPS.
2018-08-23gnu: Add r-a3.pimi
gnu/packages/cran.scm (r-a3): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23gnu: Add r-manipulatewidget.pimi
gnu/packages/cran.scm (r-manipulatewidget): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23gnu: Add r-slam.pimi
gnu/packages/cran.scm (r-slam): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23gnu: Add r-abcanalysis.pimi
gnu/packages/cran.scm (r-abcanalysis): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23gnu: Add r-miniui.pimi
gnu/packages/web.scm (r-miniui): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23gnu: qjackctl: Update to 0.5.3.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (qjackctl): Update to 0.5.3.
2018-08-23gnu: byobu: Update home page.Tobias Geerinckx-Rice
* gnu/packages/screen.scm (byobu)[home-page]: Update & use HTTPS.
2018-08-23gnu: byobu: Update to 5.127.Tobias Geerinckx-Rice
* gnu/packages/screen.scm (byobu): Update to 5.127. * gnu/packages/patches/byobu-writable-status.patch: Adjust context accordingly.
2018-08-23gnu: wine-staging-patchset-data: Don't use unstable archive.Tobias Geerinckx-Rice
* gnu/packages/wine.scm (wine-staging-patchset-data)[source]: Use GIT-FETCH and GIT-FILE-NAME. [native-inputs]: Remove unzip. [arguments]: Adjust and refactor accordingly.
2018-08-23gnu: yubico-piv-tool: Update to 1.6.1.Tobias Geerinckx-Rice
* gnu/packages/security-token.scm (yubico-piv-tool): Update to 1.6.1.
2018-08-23gnu: r-car: Update to 3.0-1.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-car): Update to 3.0-1.
2018-08-23gnu: r-digest: Update to 0.6.16.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-digest): Update to 0.6.16.
2018-08-23gnu: r-dplyr: Update to 0.7.6.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.6.
2018-08-23gnu: r-rcpp: Update to 0.12.18.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.18.
2018-08-23gnu: duplicity: Update to 0.7.18.Tobias Geerinckx-Rice
* gnu/packages/backup.scm (duplicity): Update to 0.7.18.
2018-08-23gnu: darcs: Update to 2.14.1.Arun Isaac
* gnu/packages/version-control.scm (darcs): Update to 2.14.1. [arguments]: Add patch-sh phase. Enable tests.
2018-08-23gnu: ghc-zlib: Update to 0.6.2.Arun Isaac
* gnu/packages/haskell.scm (ghc-zlib): Update to 0.6.2.
2018-08-23gnu: ghc-quickcheck-instances: Update to 0.3.18.Arun Isaac
* gnu/packages/haskell-check.scm (ghc-quickcheck-instances): Update to 0.3.18. [arguments]: Allow building with newer base-compat.
2018-08-23gnu: ghc-graphviz: Update to 2999.20.0.2.Arun Isaac
* gnu/packages/haskell.scm (ghc-graphviz): Update to 2999.20.0.2. [native-inputs]: Add ghc-hspec, graphviz and hspec-discover.
2018-08-23gnu: ghc-wl-pprint-text: Update to 1.2.0.0.Arun Isaac
* gnu/packages/haskell.scm (ghc-wl-pprint-text): Update to 1.2.0.0. [inputs]: Add ghc-base-compat.
2018-08-23gnu: ghc-base-compat: Update to 0.10.4.Arun Isaac
* gnu/packages/haskell.scm (ghc-base-compat): Update to 0.10.4.
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