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Fixes <https://bugs.gnu.org/49102>.
Reported by Mathieu Othacehe <othacehe@gnu.org>
and Tobias Geerinckx-Rice <me@tobias.gr>.
Fixes a regression introduced in
8cef92d0633850d97c1a1d4521812268f56672be, whereby in case of file
collisions, the "wrong" one would take precedence.
* guix/build/profiles.scm (manifest-sexp->inputs+search-paths): Perform
a breadth-first traversal. Reverse INPUTS and SEARCH-PATHS in the base
case.
* tests/profiles.scm ("profile-derivation, ordering & collisions"):
New test.
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OpenBLAS performs better than LAPACK, the reference implementation.
This is also consistent with the choice of BLAS/LAPACK implementations
made in most other packages.
* gnu/packages/maths.scm (petsc)[inputs]: Replace LAPACK by OPENBLAS.
[arguments]: Pass "--with-openblas=1".
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* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.13.0.
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* gnu/packages/python-xyz.scm (python-pika): Update to 1.2.0.
[source]: Change to GIT-FETCH.
[arguments]: New field. Override and disable tests.
[native-inputs]: Remove PYTHON-PYEV. Add PYTHON-MOCK, PYTHON-NOSE, and
PYTHON-GEVENT.
(python2-pika): Remove variable.
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* gnu/packages/engineering.scm (libngspice)[arguments]<#:phases>: Rename phase
'delete-script-files to 'delete-scripts-and-config and delete config.h.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
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* gnu/packages/engineering.scm (libngspice)[arguments]<#:configure-flags>:
Pass "--with-readline=no".
[inputs]: Remove readline.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
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* gnu/packages/java.scm (java-kafka-clients): Disable a test that fails
non-deterministically.
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* gnu/packages/java.scm (java-jmh): Switch to maven-build-system.
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* gnu/packages/java.scm (java-jmh): Update to 1.32.
[source]: Switch to the git repository.
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* gnu/packages/maven.scm (maven-enforcer-parent-pom): Fix dependency
versions in pom file.
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* gnu/packages/maven.scm (maven-core)[phases]: Replace default hardcoded
versions by versions of packages we have in Guix.
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* gnu/packages/java.scm (java-commons-math3)[phases]: Use
install-from-pom.
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* gnu/packges/java.scm (java-jopt-simple-4): New variable.
(java-jopt-simple): Install to maven repository structure.
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* guix/build/java-utils.scm (install-from-pom): Fix `find-files` to look
only for jar files.
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* guix/build/maven/pom.scm (fix-pom-dependencies): Actually use the
temporary file that was created.
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* guix/build/maven/pom.scm (fix-pom-dependencies): Also look at local
packages when looking for a package version.
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* guix/build/maven/pom.scm (fix-pom-dependencies): Support fixing
modules that do not exist.
* guix/build/maven-build-system.scm (fix-pom): Fix modules.
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* guix/build/maven/pom.scm (fix-pom-dependencies): Add support for fixing
extension versions.
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* guix/build/maven-build-system (fix-pom): Fix a single pom file without
recursing
(fix-pom-files): Find local packages and all submodules, and fix them
all at once.
(add-local-package): Move to...
* guix/build/maven/pom.scm (add-local-package): ...here.
(pom-and-submodules, pom-local-packages): New procedures.
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* guix/build/maven/pom.scm (pom-version, pom-groupid): Do not use inputs
and local packages information anymore. Adapt file to new arguments.
* guix/build/maven-build-system.scm: Adapt to new arguments.
* guix/build/java-utils.scm: Adapt to new arguments.
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* guix/build/java-utils.scm (generate-pom.xml): New procedure.
* gnu/packages/maven.scm (java-surefire-junit4): Use it.
* gnu/packages/java.scm (java-qdox, java-jsr250, java-jsr305)
(java-aopalliance, java-jboss-el-api-spec)
(java-jboss-interceptors-api-spec): Use it.
(java-qdox-M9): Ensure the generated pom file has the correct version.
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* gnu/packages/web-browsers.scm (nyxt): Update to 2.1.0.
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* gnu/packages/libreoffice.scm (libreoffice)[inputs]: Add box2d, dtoa.
[arguments]: Adjust custom 'prepare-src, 'bin-and-desktop-install phases.
Add custom 'insert-external-tarballs phase. Adjust configure-flags to
build without skia. Remove deprecated make-flag
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* gnu/packages/libreoffice.scm (orcus): Update to 0.16.1.
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* gnu/packages/libreoffice.scm (orcus)[arguments]: Add configure-flag to
skip static library.
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* gnu/packages/libreoffice.scm (ixion): Update to 0.16.1.
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* gnu/packages/ocaml.scm (ocaml-uri)[source]: Add a file-name field.
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* gnu/packages/emacs-xyz.scm (emacs-shell-command+)[source]: Add a
file-name field.
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* gnu/packages/bioinformatics.scm (ensembl-vep)[source]: Add a file-name
field.
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* gnu/packages/game-development.scm (box2d): New variable.
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Previously: This release was supplied by nixbld.
Now: This release was supplied by GNU Guix.
* gnu/packages/libreoffice.scm (libreoffice)[arguments]: Add
configure-flag to set vendor to 'GNU Guix'.
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* gnu/packages/crates-io.scm (rust-battery-0.7): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/crates-io.scm (rust-lazycell-1): Update to 1.3.0.
[arguments]: Remove #:skip-build.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/crates-io.scm (rust-mach-0.3): New variable.
(rust-mach-0.2): Inherit from above.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/crates-io.scm (rust-uom-0.30): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/crates-io.scm (rust-uom-0.31): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/lua.scm (emilua): Update to 0.3.2.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/golang.scm (go-gopkg-in-yml-v3): New variable
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/games.scm (widelands)[description]: Update to mirror changes in
the stable release.
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* gnu/packages/games.scm (widelands-21): New variable.
"21" was the last beta release. Upstream has now switched to a new versioning
scheme, with lesser numbers.
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* gnu/packages/games.scm (widelands): Update to 1.0.
[source]: Download from github as there is no tarball for v1.0 on their
website.
[inputs]: Add curl.
* gnu/packages/patches/widelands-system-wide_minizip.patch: Adjust for
1.0. CmakeLists.txt now already defines CMAKE_MODULE_PATH, so I've moved
FindMinizip.cmake to this path.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/bioinformatics.scm (perl-cworld-dekker): New variable.
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* gnu/packages/python-xyz.scm (python-ddt): Update to 1.4.2.
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* gnu/packages/emacs-xyz.scm (emacs-which-key): Update to 3.5.3.
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* gnu/packages/messaging.scm (dino): Add comments for v0.3.0 release.
[inputs]: Add gspell and icu4c.
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These new inputs are referenced by the package but was missing in
the package definition. Some of these inputs might have been used
by the package indirectly via propagation from other inputs.
* gnu/packages/messaging.scm (dino)[native-inputs]: Add gobject-introspection.
[inputs]: Add atk, cairo, gdk-pixbug+svg, libnice and pango.
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* gnu/packages/messaging.scm (dino)[inputs]: Remove duplicate gpgme,
gtk+, glib-networking and gsettings-desktop-schemas.
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* gnu/packages/browser-extensions.scm (uassets): Update to 20d21ad7e.
(ublock-origin): Update to 1.36.0.
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* gnu/packages/chromium.scm (%chromium-version): Set to 91.0.4472.114.
(%ungoogled-revision): Set to a9eb6fd.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
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* gnu/packages/mail.scm (dovecot-pigeonhole): Update to 0.5.15.
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