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2023-07-19gnu: Add r-ucell.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ucell): New variable.
2023-07-19gnu: Add r-tcgautils.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgautils): New variable.
2023-07-19gnu: Add r-globalancova.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-globalancova): New variable.
2023-07-19gnu: Add r-seqarray.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-seqarray): New variable.
2023-07-19gnu: Add r-nebulosa.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-nebulosa): New variable.
2023-07-19gnu: Add r-ggtreeextra.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggtreeextra): New variable.
2023-07-19gnu: Add r-survcomp.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-survcomp): New variable.
2023-07-19gnu: r-missmethyl: Move out of experiments section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-missmethyl): Move from experiments section to packages section.
2023-07-19gnu: r-cellid: Move out of experiments section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cellid): Move from experiments section to packages section.
2023-07-19gnu: Add r-mfuzz.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mfuzz): New variable.
2023-07-19gnu: Add r-raggedexperiment.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-raggedexperiment): New variable.
2023-07-19gnu: Add r-spatialexperiment.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-spatialexperiment): New variable.
2023-07-19gnu: Add r-singscore.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-singscore): New variable.
2023-07-19gnu: Add r-plyranges.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-plyranges): New variable.
2023-07-19gnu: Add r-tkwidgets.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tkwidgets): New variable.
2023-07-19gnu: Add r-dyndoc.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dyndoc): New variable.
2023-07-19gnu: Add r-genomicdatacommons.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicdatacommons): New variable.
2023-07-19gnu: Add r-snprelate.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-snprelate): New variable.
2023-07-19gnu: Add r-enhancedvolcano.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enhancedvolcano): New variable.
2023-07-19gnu: Add r-logistf.Ricardo Wurmus
* gnu/packages/cran.scm (r-logistf): New variable.
2023-07-19gnu: Add r-formula-tools.Ricardo Wurmus
* gnu/packages/cran.scm (r-formula-tools): New variable.
2023-07-19gnu: Add r-operator-tools.Ricardo Wurmus
* gnu/packages/cran.scm (r-operator-tools): New variable.
2023-07-19gnu: Add r-uchardet.Ricardo Wurmus
* gnu/packages/cran.scm (r-uchardet): New variable.
2023-07-19gnu: Add r-gwasexacthw.Ricardo Wurmus
* gnu/packages/cran.scm (r-gwasexacthw): New variable.
2023-07-19gnu: Add r-gsva.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gsva): New variable.
2023-07-19gnu: cl-usocket: Update to 0.8.6.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.6. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-19gnu: cl-ndebug: Update to 0.2.0.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-ndebug): Update to 0.2.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-19gnu: cl-lisp-unit2: Update to 0.9.4-0.b5aa17b.Andre A. Gomes
* gnu/packages/lisp-check.scm (sbcl-lisp-unit2): Update to 0.9.4-0.b5aa17b. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-19gnu: cl-array-utils: Update to 1.2.0-0.29da8fc.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-array-utils): Update to 1.2.0-0.29da8fc. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-07-19gnu: commencement: hurd-minimal-boot0: Update to 0.9.git20230216.Janneke Nieuwenhuizen
* gnu/packages/commencement.scm (hurd-minimal-boot0): Remove redundant let and package-with-bootstrap-guile. [name]: New field; give proper name. [version]: New field. [source]: Update to 0.9.git20230216, using hurd-headers-boot0' source. [inputs]: Add autoconf-boot0, automake-boot0, gnumach-headers-boot0. [native-inputs]: Add autoconf-boot0, automake-boot0, and gnumach-headers-boot0. * gnu/packages/commencement.scm (hurd-version-boot0, hurd-source-boot0): Remove.
2023-07-19gnu: commencement: hurd-headers-boot0: Update to 0.9.git20230216.Janneke Nieuwenhuizen
* gnu/packages/commencement.scm (hurd-headers-boot0): Remove redundant outer let and package-with-bootstrap-guile. [name]: New field; give proper name. [version]: New field. [source]: Update to 0.9.git20230216, using git-fetch-from-tarball. [inputs]: Add autoconf-boot0, automake-boot0, gnumach-headers-boot0.
2023-07-19gnu: mig: Use git-fetch.Josselin Poiret
Now that we have `git-fetch-from-tarball' to break the cycle in commencement for git-fetch sources, we can finally update mig to use git-fetch to allow `--with-commit' builds. * gnu/packages/hurd.scm (mig)[source]: Use git-fetch again. * gnu/packages/commencement.scm (mig-boot0)[source]: Use git-fetch-from-tarball accordingly.
2023-07-19gnu: commencement: mig-boot0: Update to 1.8+git20230520.Janneke Nieuwenhuizen
* gnu/packages/commencement.scm (mig-boot0): Remove redundant outer let. [name]: New field, give proper name. [version]: New field [source]: Update to 1.8+git20230520. [native-inputs]: Add autoconf-boot0, automake-boot0. [inputs]: Add gnumach-headers-boot0.
2023-07-19gnu: commencement: gnumach-headers-boot0: Update to 1.8+git20221224.Janneke Nieuwenhuizen
* gnu/packages/commencement.scm (gnumach-headers-boot0)[name]: New field; give proper name. [source]: Update to 1.8+git20221224, using git-fetch-from-tarball. [native-inputs]: Add autoconf-boot0, automake-boot0, texinfo-boot0. [arguments]: Add 'patch-compat' phase to allow building hurd-minimal etc, with our out-of-date bootstsrap binaries.
2023-07-19gnu: commencement: Add git-fetch-from-tarball utility.Ludovic Courtès
* gnu/packages/commencement.scm (git-fetch-from-tarball): New procedure.
2023-07-19gnu: commencement: Add automake-boot0.Janneke Nieuwenhuizen
* gnu/packages/commencement.scm (automake-boot0): New variable.
2023-07-19gnu: commencement: Add autoconf-boot0.Janneke Nieuwenhuizen
* gnu/packages/commencement.scm (autoconf-boot0): New variable.
2023-07-16gnu: python-wand: Fix build.Hilton Chain
Fixes <https://issues.guix.gnu.org/64350>. * gnu/packages/python-xyz.scm (python-wand)[arguments]<#:phases>: Pass tests? to 'check. Reported-by: Thorsten Wilms <t_w_@freenet.de> Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2023-07-16gnu: bcachefs-tools: Update to 0.1-17.c8bec83.Tobias Geerinckx-Rice
* gnu/packages/file-systems.scm (bcachefs-tools): Update to 0.1-17.c8bec83. [arguments]: Remove obsolete PYTEST_ variables from #:make-flags, and add NO_RUST. Delete the obsolete 'promote-mount.bcachefs.sh phase. Add a custom 'check phase. [native-inputs]: Consolidate separate lists.
2023-07-16gnu: bcachefs-tools: Respect input rewriting.Tobias Geerinckx-Rice
* gnu/packages/file-systems.scm (bcachefs-tools)[arguments]: Rewrite the 'promote-mount.bcachefs.sh phase to use SEARCH-INPUT-FILE.
2023-07-16gnu: libqb: Tweak description.Tobias Geerinckx-Rice
* gnu/packages/high-availability.scm (libqb)[synopsis]: Fix spelling. [description]: Use @acronym{}.
2023-07-16gnu: libqb: Update to 2.0.7.Tobias Geerinckx-Rice
* gnu/packages/high-availability.scm (libqb): Update to 2.0.7.
2023-07-16gnu: libqb: Fix cross-compilation.Tobias Geerinckx-Rice
* gnu/packages/high-availability.scm (libqb)[native-inputs]: Move libxml2 from here… [inputs]: …to here.
2023-07-16gnu: libqb: Remove obsolete bootstrapping inputs.Tobias Geerinckx-Rice
* gnu/packages/high-availability.scm (libqb)[native-inputs]: Remove autoconf, automake, and libtool.
2023-07-16gnu: gifsicle: Update to 1.94.Tobias Geerinckx-Rice
* gnu/packages/image.scm (gifsicle): Update to 1.94. [arguments]: Don't explicitly return #t from phases.
2023-07-16gnu: hwinfo: Make with flags.Tobias Geerinckx-Rice
* gnu/packages/hardware.scm (hwinfo)[arguments]: Move CC, LIBDIR, and VERSION from hacky substitutions to superior #:make-flags. Honour them in the 'build phase.
2023-07-16gnu: hwinfo: Factorise 'install-man-pages.Tobias Geerinckx-Rice
* gnu/packages/hardware.scm (hwinfo)[arguments]: Get section numbers from the man page file names rather than hard-coding 2.
2023-07-16gnu: hwinfo: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/hardware.scm (hwinfo)[source, arguments]: Rewrite as G-expressions.
2023-07-16gnu: hwinfo: Update to 23.1.Tobias Geerinckx-Rice
* gnu/packages/hardware.scm (hwinfo): Update to 23.1.
2023-07-16gnu: spread-sheet-widget: Omit static library.Tobias Geerinckx-Rice
* gnu/packages/gtk.scm (spread-sheet-widget)[arguments]: Add "--disable-static" to #:configure-flags.
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