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2020-05-12gnu: r-bigrquery: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bigrquery): Update to 1.3.0.
2020-05-12gnu: r-gargle: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gargle): Update to 0.5.0. [native-inputs]: Add r-knitr.
2020-05-12gnu: r-rcppparallel: Update to 5.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.1.
2020-05-12gnu: r-npsurv: Update to 0.4-0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-npsurv): Update to 0.4-0.1.
2020-05-12gnu: r-lsei: Update to 1.2-0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-lsei): Update to 1.2-0.1.
2020-05-12gnu: r-performance: Update to 0.4.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-performance): Update to 0.4.6.
2020-05-12gnu: r-sjstats: Update to 0.18.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjstats): Update to 0.18.0.
2020-05-12gnu: r-writexl: Update to 1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-writexl): Update to 1.3.
2020-05-12gnu: r-sjlabelled: Update to 1.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.4. [propagated-inputs]: Remove r-haven. [native-inputs]: Add r-knitr.
2020-05-12gnu: r-officer: Update to 0.3.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): Update to 0.3.9.
2020-05-12gnu: r-ggpubr: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpubr): Update to 0.3.0. [propagated-inputs]: Add r-rstatix and r-tibble.
2020-05-12gnu: Add r-rstatix.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstatix): New variable.
2020-05-12gnu: r-renv: Update to 0.10.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-renv): Update to 0.10.0. [native-inputs]: Add r-knitr.
2020-05-12gnu: r-openxlsx: Update to 4.1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.5. [native-inputs]: Add r-knitr.
2020-05-12gnu: r-vim: Update to 6.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-vim): Update to 6.0.0. [native-inputs]: Add r-knitr.
2020-05-12gnu: r-pillar: Update to 1.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-pillar): Update to 1.4.4.
2020-05-12gnu: r-vctrs: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-vctrs): Update to 0.3.0.
2020-05-12gnu: r-recipes: Update to 0.1.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-recipes): Update to 0.1.12.
2020-05-12gnu: r-extremes: Update to 2.0-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-extremes): Update to 2.0-12.
2020-05-12gnu: r-circlize: Update to 0.4.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): Update to 0.4.9. [native-inputs]: Add r-knitr.
2020-05-12gnu: r-pkgbuild: Update to 1.0.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.8.
2020-05-12gnu: r-ps: Update to 1.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ps): Update to 1.3.3.
2020-05-12gnu: r-modelr: Update to 0.1.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-modelr): Update to 0.1.7.
2020-05-12gnu: r-scales: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-scales): Update to 1.1.1.
2020-05-12gnu: epiphany: Enable tests.Leo Prikler
* gnu/packages/gnome.scm (epiphany)[arguments]<#:tests?>: Drop it. <#:phases>: Add disable-failing-tests and pre-check. [inputs]: Add xorg-server-for-tests. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2020-05-12gnu: epiphany: Update to 3.34.4.Leo Prikler
* gnu/packages/gnome.scm (epiphany): Update to 3.34.4. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2020-05-12gnu: guile-dsv: Update to 0.3.0.Alex Sassmannshausen
* gnu/packages/guile-xyz.scm (guile-dsv): Update to 0.3.0.
2020-05-12gnu: Add julia-compat.nixo
* gnu/packages/julia-xyz.scm: New file. * gnu/local.mk: Add packages/julia-xyz.scm to it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-12gnu: julia: Update to 1.4.1.nixo
* gnu/packages/julia.scm (julia): Update to 1.4.1. * gnu/packages/julia.scm (julia-llvm): Update to 8. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-12gnu: Add libwhich.nixo
* gnu/packages/julia.scm (libwhich): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-12gnu: julia: Fix patch.nixo
* gnu/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch: replaced with actual patch. It was a patch creating the patch. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-05-12gnu: julia: Fix patch URL.nixo
* gnu/packages/julia.scm (julia-patch-url): Add ".patch". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-12gnu: cuirass: Update to 0.0.1-30.9559fd1.Ricardo Wurmus
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-30.9559fd1.
2020-05-12gnu: mumi: Update to 0.0.1-1.75d34d4.Ricardo Wurmus
* gnu/packages/mail.scm (mumi): Update to 0.0.1-1.75d34d4. [inputs]: Remove guile-debbugs and gnutls; replace guile-2.2 with guile-3.0.
2020-05-12gnu: guile-debbugs: Build with Guile 3.0.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-debbugs)[native-inputs]: Replace guile-2.2 with guile-3.0.
2020-05-12gnu: guile-pfds: Remove obsolete build phase.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-pfds)[arguments]: Remove phase "work-around-guile-bug".
2020-05-12gnu: terminology: Update to 1.7.0.Efraim Flashner
* gnu/packages/enlightenment.scm (terminology): Update to 1.7.0.
2020-05-12gnu: evisum: Update to 0.4.1.Efraim Flashner
* gnu/packages/enlightenment.scm (evisum): Update to 0.4.1.
2020-05-12gnu: guile-redis: Build with Guile 3.0.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-redis)[native-inputs]: Replace guile-2.2 with guile-3.0. (guile2.2-redis): New variable.
2020-05-12gnu: guile-lens: Build with Guile 3.0.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-lens)[native-inputs]: Replace guile-2.2 with guile-3.0. (guile2.2-lens): New variable.
2020-05-12gnu: guile-webutils: Build with Guile 3.0.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-webutils)[source]: Add snippet to patch configure.ac. [inputs]: Replace guile-2.2 with guile-3.0. (guile2.2-webutils): New variable.
2020-05-12gnu: guile-ncurses: Build with Guile 3.0.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-ncurses)[inputs]: Replace guile-2.2 with guile-3.0. (guile3.0-ncurses): Deprecate in favor of guile-ncurses. (guile2.2-ncurses): New variable.
2020-05-12gnu: guile-sjson: Build with Guile 3.0.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-sjson)[source]: Add snippet to patch configure file. [inputs]: Replace guile-2.2 with guile-3.0. (guile2.2-sjson): New variable.
2020-05-11gnu: Remove openimageio@1.7.Marius Bakke
* gnu/packages/graphics.scm (openimageio-1.7): Remove variable.
2020-05-11gnu: Remove boost@1.69.Marius Bakke
* gnu/packages/boost.scm (boost-1.69): Remove variable.
2020-05-11gnu: guix: Update to bdc801e1cf.Marius Bakke
* gnu/packages/package-management.scm (guix): Update to 1.1.0-4.bdc801e.
2020-05-11news: Add entry for 'guix graph --path'.Ludovic Courtès
* etc/news.scm: Add entry.
2020-05-11guix graph: Add '--path'.Ludovic Courtès
* guix/scripts/graph.scm (display-path): New procedure. (%options, show-help): Add '--path'. (guix-graph): Handle it. * tests/guix-graph.sh: Add tests. * doc/guix.texi (Invoking guix graph): Document it. (Invoking guix size): Mention it.
2020-05-11graph: Add 'shortest-path'.Ludovic Courtès
* guix/graph.scm (shortest-path): New procedure. * tests/graph.scm ("shortest-path, packages + derivations") ("shortest-path, reverse packages") ("shortest-path, references"): New tests.
2020-05-11graph: reference/referrer node types work with graph traversal.Ludovic Courtès
The graph traversal procedures in (guix graph) assume that nodes can be compared with 'eq?', which was not the case for nodes of %REFERENCE-NODE-TYPE and %REFERRER-NODE-TYPE (strings). * guix/scripts/graph.scm (intern): New procedure. (ensure-store-items, references*) (%reference-node-type, non-derivation-referrers) (%referrer-node-type): Use it on all store items. * tests/graph.scm ("node-transitive-edges, references"): New test.
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